Wall clock time and date at job start Tue Mar 31 2020 07:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 110.43954 * 2 1 4 4 C 1.54814 * 110.48336 * 237.31196 * 2 1 3 5 5 C 1.54995 * 102.09206 * 220.44432 * 4 2 1 6 6 O 1.44380 * 103.49088 * 37.02233 * 5 4 2 7 7 C 1.43744 * 106.97954 * 319.94075 * 6 5 4 8 8 H 1.08999 * 110.00430 * 267.01999 * 7 6 5 9 9 C 1.50694 * 109.88295 * 145.93409 * 7 6 5 10 10 O 1.21288 * 120.00069 * 357.17315 * 9 7 6 11 11 N 1.34780 * 120.00149 * 177.17223 * 9 7 6 12 12 C 1.46503 * 119.99828 * 180.02562 * 11 9 7 13 13 H 1.08998 * 110.55528 * 312.93065 * 12 11 9 14 14 C 1.54843 * 110.62660 * 75.83462 * 12 11 9 15 15 C 1.55846 * 103.44653 * 118.49086 * 14 12 11 16 16 H 1.09001 * 115.56170 * 159.56651 * 15 14 12 17 17 C 1.55851 * 105.05955 * 288.17121 * 15 14 12 18 18 C 1.54855 * 103.44518 * 71.82742 * 17 15 14 19 19 C 1.55843 * 110.62185 * 189.86005 * 12 11 9 20 20 H 1.09004 * 115.56652 * 81.94618 * 19 12 11 21 21 N 1.50239 * 101.05232 * 32.93281 * 15 14 12 22 22 C 1.36932 * 130.83580 * 126.05683 * 21 15 14 23 23 H 1.07997 * 120.00421 * 9.84838 * 22 21 15 24 24 C 1.38819 * 119.99937 * 189.85786 * 22 21 15 25 25 N 1.31618 * 119.99674 * 8.89126 * 24 22 21 26 26 Si 1.86797 * 120.00040 * 188.89553 * 24 22 21 27 27 H 1.48499 * 109.47139 * 84.98821 * 26 24 22 28 28 H 1.48496 * 109.46910 * 204.98653 * 26 24 22 29 29 H 1.48497 * 109.46959 * 324.98357 * 26 24 22 30 30 H 1.09007 * 109.46402 * 297.45579 * 1 2 3 31 31 H 1.08999 * 109.47399 * 177.45858 * 1 2 3 32 32 H 1.09002 * 109.47174 * 57.45302 * 1 2 3 33 33 H 1.08999 * 110.90714 * 338.64092 * 4 2 1 34 34 H 1.08998 * 110.90701 * 102.24366 * 4 2 1 35 35 H 1.09004 * 110.61924 * 278.52500 * 5 4 2 36 36 H 1.08996 * 110.75309 * 155.58875 * 5 4 2 37 37 H 0.96995 * 119.99837 * 359.97438 * 11 9 7 38 38 H 1.09007 * 110.62663 * 236.97568 * 14 12 11 39 39 H 1.08994 * 110.63291 * 359.83866 * 14 12 11 40 40 H 1.09006 * 110.62273 * 190.31516 * 17 15 14 41 41 H 1.08994 * 110.62996 * 313.33330 * 17 15 14 42 42 H 1.08997 * 110.62957 * 118.48858 * 18 17 15 43 43 H 1.08997 * 110.62504 * 241.35334 * 18 17 15 44 44 H 0.97006 * 120.00210 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0718 -0.7832 -1.2206 5 6 3.2659 -1.5570 -0.6059 6 8 2.7955 -1.9101 0.7126 7 6 2.0694 -0.7766 1.2169 8 1 2.7331 -0.1379 1.7997 9 6 0.9228 -1.2434 2.0761 10 8 0.7055 -2.4297 2.2052 11 7 0.1388 -0.3427 2.7011 12 6 -0.9755 -0.7966 3.5369 13 1 -1.5579 -1.5579 3.0179 14 6 -0.4563 -1.3366 4.8921 15 6 -1.1165 -0.3876 5.9372 16 1 -1.1754 -0.7760 6.9540 17 6 -0.3700 0.9713 5.7787 18 6 -0.8892 1.5114 4.4234 19 6 -1.8786 0.4052 3.9477 20 1 -2.6119 0.7183 3.2044 21 7 -2.4225 -0.0792 5.2617 22 6 -3.7117 -0.2015 5.7069 23 1 -3.9055 -0.4216 6.7462 24 6 -4.7695 -0.0427 4.8221 25 7 -4.5381 0.0507 3.5298 26 14 -6.5212 0.0386 5.4656 27 1 -6.8359 1.4325 5.8699 28 1 -7.4608 -0.3915 4.3992 29 1 -6.6596 -0.8605 6.6394 30 1 -0.3632 0.4739 0.9120 31 1 -0.3634 -1.0266 -0.0456 32 1 -0.3633 0.5529 -0.8663 33 1 1.3196 -1.4714 -1.6062 34 1 2.4102 -0.1017 -2.0010 35 1 4.1456 -0.9166 -0.5408 36 1 3.4864 -2.4522 -1.1873 37 1 0.3129 0.6059 2.5982 38 1 -0.7837 -2.3648 5.0465 39 1 0.6304 -1.2694 4.9413 40 1 -0.6334 1.6509 6.5892 41 1 0.7081 0.8152 5.7422 42 1 -1.4100 2.4588 4.5618 43 1 -0.0681 1.6257 3.7157 44 1 -5.2773 0.1620 2.9115 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096031821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:29 Heat of formation + Delta-G solvation = -22.210719 kcal Electronic energy + Delta-G solvation = -25429.723573 eV Core-core repulsion = 21962.867094 eV Total energy + Delta-G solvation = -3466.856479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62658 -39.32831 -37.61969 -34.34091 -33.17721 -32.37880 -30.30260 -29.43603 -28.54565 -27.85729 -26.67570 -24.19026 -23.02736 -21.70462 -21.13567 -20.05220 -19.58287 -18.30416 -17.25197 -16.90513 -16.73400 -15.93606 -15.30634 -14.96719 -14.73864 -14.24857 -14.12044 -13.96449 -13.80866 -13.36041 -12.60668 -12.49072 -12.16228 -12.11600 -11.87551 -11.65837 -11.55290 -11.25557 -11.12569 -11.05341 -10.95458 -10.90784 -10.87173 -10.75851 -10.26225 -10.14373 -10.03292 -9.96869 -9.47993 -9.14707 -9.09640 -8.88384 -8.32961 -6.95983 -5.80502 -3.15424 2.98601 3.25923 3.38036 3.43277 3.44728 4.03986 4.31553 4.42451 4.58980 4.71495 4.95457 5.01989 5.14134 5.25132 5.29293 5.33477 5.48380 5.50497 5.60413 5.63894 5.77606 5.81582 5.82092 5.88280 5.97142 5.99676 6.04576 6.13929 6.27379 6.29924 6.32684 6.45238 6.63366 6.68980 6.72752 6.83738 6.91825 6.99766 7.28972 7.50115 7.65913 7.98279 8.04635 8.68005 9.02998 9.67658 10.49607 11.32497 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.004437 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.760879 B = 6308.925783 C = 6782.942396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.150 4.150 5 C 0.043 3.957 6 O -0.347 6.347 7 C 0.059 3.941 8 H 0.089 0.911 9 C 0.513 3.487 10 O -0.525 6.525 11 N -0.713 5.713 12 C 0.131 3.869 13 H 0.082 0.918 14 C -0.135 4.135 15 C 0.129 3.871 16 H 0.086 0.914 17 C -0.128 4.128 18 C -0.143 4.143 19 C 0.163 3.837 20 H 0.143 0.857 21 N -0.585 5.585 22 C -0.216 4.216 23 H 0.080 0.920 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.915 3.085 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.395 0.605 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 4.140 -7.456 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.135 4.135 3 H 0.109 0.891 4 C -0.188 4.188 5 C -0.033 4.033 6 O -0.265 6.265 7 C -0.002 4.002 8 H 0.107 0.893 9 C 0.297 3.703 10 O -0.400 6.400 11 N -0.370 5.370 12 C 0.025 3.975 13 H 0.100 0.900 14 C -0.175 4.175 15 C 0.021 3.979 16 H 0.104 0.896 17 C -0.168 4.168 18 C -0.183 4.183 19 C 0.055 3.945 20 H 0.160 0.840 21 N -0.306 5.306 22 C -0.344 4.344 23 H 0.098 0.902 24 C -0.205 4.205 25 N -0.565 5.565 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.234 0.766 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.659 3.050 -7.265 15.769 hybrid contribution -0.690 0.642 0.102 0.948 sum 12.969 3.693 -7.163 15.269 Atomic orbital electron populations 1.22257 0.92837 1.03291 1.03647 1.22500 0.98087 0.99607 0.93261 0.89114 1.23242 0.98450 0.99459 0.97613 1.23604 0.95982 0.99885 0.83861 1.89012 1.70743 1.35895 1.30849 1.22803 0.93200 0.88549 0.95682 0.89341 1.20198 0.83171 0.86862 0.80037 1.90706 1.70741 1.16547 1.62008 1.46623 1.31791 1.09172 1.49409 1.22699 0.85604 0.99751 0.89430 0.90021 1.23246 0.98219 0.99486 0.96582 1.23042 0.86695 0.92868 0.95276 0.89615 1.22919 0.97741 0.98579 0.97521 1.23106 0.98514 1.00374 0.96313 1.23462 0.91508 0.88846 0.90717 0.83968 1.46397 0.99787 1.72896 1.11502 1.19022 0.80051 1.41822 0.93531 0.90241 1.24758 0.97895 1.02677 0.95174 1.69649 1.30328 1.55916 1.00629 0.86088 0.84069 0.77726 0.77595 1.21604 1.21696 1.20731 0.90163 0.91876 0.92064 0.90039 0.89994 0.92111 0.88767 0.76629 0.92306 0.92821 0.92787 0.93125 0.92307 0.93577 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 7.92 37.16 0.29 -1.71 16 2 C -0.12 -1.21 3.64 -89.08 -0.32 -1.53 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.15 -1.39 6.71 -24.72 -0.17 -1.56 16 5 C 0.04 0.44 7.72 38.21 0.29 0.73 16 6 O -0.35 -5.18 10.74 -54.80 -0.59 -5.77 16 7 C 0.06 0.79 3.84 -27.31 -0.10 0.68 16 8 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 9 C 0.51 8.82 5.42 -10.99 -0.06 8.77 16 10 O -0.52 -11.58 16.30 -14.02 -0.23 -11.81 16 11 N -0.71 -11.54 3.17 -51.40 -0.16 -11.71 16 12 C 0.13 2.66 3.01 -65.44 -0.20 2.46 16 13 H 0.08 1.98 8.00 -51.93 -0.42 1.57 16 14 C -0.13 -2.70 5.94 -24.24 -0.14 -2.85 16 15 C 0.13 2.60 5.48 -62.80 -0.34 2.26 16 16 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 17 C -0.13 -2.23 6.44 -24.23 -0.16 -2.39 16 18 C -0.14 -2.54 6.29 -24.23 -0.15 -2.69 16 19 C 0.16 3.53 4.46 -62.80 -0.28 3.25 16 20 H 0.14 3.52 5.93 -51.93 -0.31 3.21 16 21 N -0.59 -14.21 2.98 -145.81 -0.43 -14.65 16 22 C -0.22 -5.82 10.55 -15.06 -0.16 -5.98 16 23 H 0.08 2.09 7.84 -52.49 -0.41 1.67 16 24 C -0.01 -0.24 5.47 -17.43 -0.10 -0.33 16 25 N -0.92 -25.70 10.76 55.49 0.60 -25.10 16 26 Si 0.91 21.63 29.56 -169.99 -5.03 16.60 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.08 1.05 5.16 -51.92 -0.27 0.78 16 31 H 0.06 0.95 7.58 -51.93 -0.39 0.55 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.39 5.32 5.05 -40.82 -0.21 5.12 16 38 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 39 H 0.05 1.00 7.64 -51.93 -0.40 0.60 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.67 5.45 -51.93 -0.28 0.38 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -31.93 335.77 -9.23 -41.16 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.86 Total: 7.10 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.59 Total: -0.89 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.00 Total: -51.46 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.82 Total: -17.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.93 -9.23 -41.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096031821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.949 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds