Wall clock time and date at job start Tue Mar 31 2020 07:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 110.43954 * 2 1 4 4 C 1.54814 * 110.48336 * 237.31196 * 2 1 3 5 5 C 1.54995 * 102.09206 * 220.44432 * 4 2 1 6 6 O 1.44380 * 103.49088 * 37.02233 * 5 4 2 7 7 C 1.43744 * 106.97954 * 319.94075 * 6 5 4 8 8 H 1.08999 * 110.00430 * 267.01999 * 7 6 5 9 9 C 1.50694 * 109.88295 * 145.93409 * 7 6 5 10 10 O 1.21288 * 120.00069 * 357.17315 * 9 7 6 11 11 N 1.34780 * 120.00149 * 177.17223 * 9 7 6 12 12 C 1.46503 * 119.99828 * 180.02562 * 11 9 7 13 13 H 1.08998 * 110.55528 * 312.93065 * 12 11 9 14 14 C 1.54843 * 110.62660 * 75.83462 * 12 11 9 15 15 C 1.55846 * 103.44653 * 118.49086 * 14 12 11 16 16 H 1.09001 * 115.56170 * 159.56651 * 15 14 12 17 17 C 1.55851 * 105.05955 * 288.17121 * 15 14 12 18 18 C 1.54855 * 103.44518 * 71.82742 * 17 15 14 19 19 C 1.55843 * 110.62185 * 189.86005 * 12 11 9 20 20 H 1.09004 * 115.56652 * 81.94618 * 19 12 11 21 21 N 1.50239 * 101.05232 * 32.93281 * 15 14 12 22 22 C 1.36932 * 130.83580 * 126.05683 * 21 15 14 23 23 H 1.07997 * 120.00421 * 9.84838 * 22 21 15 24 24 C 1.38819 * 119.99937 * 189.85786 * 22 21 15 25 25 N 1.31618 * 119.99674 * 8.89126 * 24 22 21 26 26 Si 1.86797 * 120.00040 * 188.89553 * 24 22 21 27 27 H 1.48499 * 109.47139 * 84.98821 * 26 24 22 28 28 H 1.48496 * 109.46910 * 204.98653 * 26 24 22 29 29 H 1.48497 * 109.46959 * 324.98357 * 26 24 22 30 30 H 1.09007 * 109.46402 * 297.45579 * 1 2 3 31 31 H 1.08999 * 109.47399 * 177.45858 * 1 2 3 32 32 H 1.09002 * 109.47174 * 57.45302 * 1 2 3 33 33 H 1.08999 * 110.90714 * 338.64092 * 4 2 1 34 34 H 1.08998 * 110.90701 * 102.24366 * 4 2 1 35 35 H 1.09004 * 110.61924 * 278.52500 * 5 4 2 36 36 H 1.08996 * 110.75309 * 155.58875 * 5 4 2 37 37 H 0.96995 * 119.99837 * 359.97438 * 11 9 7 38 38 H 1.09007 * 110.62663 * 236.97568 * 14 12 11 39 39 H 1.08994 * 110.63291 * 359.83866 * 14 12 11 40 40 H 1.09006 * 110.62273 * 190.31516 * 17 15 14 41 41 H 1.08994 * 110.62996 * 313.33330 * 17 15 14 42 42 H 1.08997 * 110.62957 * 118.48858 * 18 17 15 43 43 H 1.08997 * 110.62504 * 241.35334 * 18 17 15 44 44 H 0.97006 * 120.00210 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0718 -0.7832 -1.2206 5 6 3.2659 -1.5570 -0.6059 6 8 2.7955 -1.9101 0.7126 7 6 2.0694 -0.7766 1.2169 8 1 2.7331 -0.1379 1.7997 9 6 0.9228 -1.2434 2.0761 10 8 0.7055 -2.4297 2.2052 11 7 0.1388 -0.3427 2.7011 12 6 -0.9755 -0.7966 3.5369 13 1 -1.5579 -1.5579 3.0179 14 6 -0.4563 -1.3366 4.8921 15 6 -1.1165 -0.3876 5.9372 16 1 -1.1754 -0.7760 6.9540 17 6 -0.3700 0.9713 5.7787 18 6 -0.8892 1.5114 4.4234 19 6 -1.8786 0.4052 3.9477 20 1 -2.6119 0.7183 3.2044 21 7 -2.4225 -0.0792 5.2617 22 6 -3.7117 -0.2015 5.7069 23 1 -3.9055 -0.4216 6.7462 24 6 -4.7695 -0.0427 4.8221 25 7 -4.5381 0.0507 3.5298 26 14 -6.5212 0.0386 5.4656 27 1 -6.8359 1.4325 5.8699 28 1 -7.4608 -0.3915 4.3992 29 1 -6.6596 -0.8605 6.6394 30 1 -0.3632 0.4739 0.9120 31 1 -0.3634 -1.0266 -0.0456 32 1 -0.3633 0.5529 -0.8663 33 1 1.3196 -1.4714 -1.6062 34 1 2.4102 -0.1017 -2.0010 35 1 4.1456 -0.9166 -0.5408 36 1 3.4864 -2.4522 -1.1873 37 1 0.3129 0.6059 2.5982 38 1 -0.7837 -2.3648 5.0465 39 1 0.6304 -1.2694 4.9413 40 1 -0.6334 1.6509 6.5892 41 1 0.7081 0.8152 5.7422 42 1 -1.4100 2.4588 4.5618 43 1 -0.0681 1.6257 3.7157 44 1 -5.2773 0.1620 2.9115 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096031821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:29 Heat of formation + Delta-G solvation = -42.320513 kcal Electronic energy + Delta-G solvation = -25430.595600 eV Core-core repulsion = 21962.867094 eV Total energy + Delta-G solvation = -3467.728505 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91402 -40.70207 -38.98122 -35.71726 -34.66585 -33.98157 -31.36543 -31.05713 -30.28016 -29.30773 -27.78503 -26.05719 -24.06343 -22.91060 -22.41173 -21.62858 -20.99542 -19.89268 -18.87886 -18.28611 -17.73717 -17.29360 -16.91300 -16.42462 -16.10726 -15.84972 -15.42288 -15.24010 -14.89336 -14.57642 -14.00951 -13.84739 -13.63917 -13.59087 -13.43050 -13.25960 -12.89962 -12.78276 -12.72982 -12.39501 -12.31165 -12.16589 -11.98015 -11.94602 -11.91592 -11.77128 -11.64795 -11.20956 -11.03277 -10.87882 -10.70388 -10.41106 -9.86210 -8.90432 -7.85256 -5.21131 1.47595 1.48645 1.56348 1.65530 2.01150 2.49559 3.06711 3.32042 3.41363 3.46920 3.68516 3.79089 3.98872 4.05990 4.10778 4.14375 4.30095 4.32390 4.41274 4.46332 4.49293 4.53941 4.66893 4.73063 4.74728 4.77110 4.85666 4.94964 4.98763 5.05296 5.07462 5.07793 5.17633 5.23856 5.32305 5.37336 5.44298 5.54113 5.73231 5.83929 5.85690 6.15315 6.65369 6.99851 7.34053 7.66689 8.54235 9.25997 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.004437 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.760879 B = 6308.925783 C = 6782.942396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.108 4.108 3 H 0.135 0.865 4 C -0.147 4.147 5 C 0.038 3.962 6 O -0.388 6.388 7 C 0.062 3.938 8 H 0.126 0.874 9 C 0.509 3.491 10 O -0.583 6.583 11 N -0.695 5.695 12 C 0.146 3.854 13 H 0.026 0.974 14 C -0.126 4.126 15 C 0.122 3.878 16 H 0.092 0.908 17 C -0.115 4.115 18 C -0.130 4.130 19 C 0.155 3.845 20 H 0.109 0.891 21 N -0.614 5.614 22 C -0.227 4.227 23 H 0.079 0.921 24 C -0.063 4.063 25 N -0.944 5.944 26 Si 0.975 3.025 27 H -0.283 1.283 28 H -0.298 1.298 29 H -0.275 1.275 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.412 0.588 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.860 6.636 -7.682 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.127 4.127 3 H 0.153 0.847 4 C -0.184 4.184 5 C -0.038 4.038 6 O -0.307 6.307 7 C 0.001 3.999 8 H 0.143 0.857 9 C 0.296 3.704 10 O -0.463 6.463 11 N -0.353 5.353 12 C 0.039 3.961 13 H 0.044 0.956 14 C -0.166 4.166 15 C 0.016 3.984 16 H 0.110 0.890 17 C -0.154 4.154 18 C -0.170 4.170 19 C 0.048 3.952 20 H 0.126 0.874 21 N -0.335 5.335 22 C -0.356 4.356 23 H 0.097 0.903 24 C -0.256 4.256 25 N -0.593 5.593 26 Si 0.804 3.196 27 H -0.210 1.210 28 H -0.225 1.225 29 H -0.200 1.200 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.420 5.590 -7.489 18.893 hybrid contribution -1.519 -0.223 0.131 1.540 sum 14.901 5.367 -7.359 17.464 Atomic orbital electron populations 1.22212 0.94917 1.00774 1.03982 1.22601 0.96103 1.01615 0.92361 0.84697 1.23257 0.97651 0.99544 0.97960 1.23894 0.97075 1.00952 0.81891 1.88977 1.71098 1.37401 1.33220 1.22960 0.91902 0.88635 0.96362 0.85686 1.21142 0.83765 0.85985 0.79525 1.90681 1.72465 1.19175 1.63937 1.46333 1.30333 1.10050 1.48585 1.22120 0.86375 0.97985 0.89589 0.95589 1.23151 0.99247 0.97934 0.96266 1.23290 0.85269 0.94669 0.95200 0.89015 1.22838 0.99136 0.96193 0.97237 1.22994 0.98379 0.98242 0.97365 1.23316 0.91852 0.90592 0.89467 0.87373 1.46698 1.00245 1.73558 1.13035 1.19336 0.81748 1.40835 0.93661 0.90276 1.25495 1.01263 1.03389 0.95455 1.69864 1.30643 1.57300 1.01449 0.85137 0.79827 0.77780 0.76839 1.21021 1.22471 1.20030 0.91241 0.95959 0.90143 0.92125 0.86435 0.89023 0.88336 0.74557 0.95146 0.90708 0.92160 0.89794 0.92679 0.89682 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 7.92 71.98 0.57 -3.25 16 2 C -0.11 -1.89 3.64 -9.80 -0.04 -1.92 16 3 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.15 -2.28 6.71 31.90 0.21 -2.07 16 5 C 0.04 0.64 7.72 72.66 0.56 1.20 16 6 O -0.39 -10.99 10.74 -130.27 -1.40 -12.38 16 7 C 0.06 1.49 3.84 30.22 0.12 1.61 16 8 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 9 C 0.51 17.40 5.42 87.65 0.48 17.87 16 10 O -0.58 -26.88 16.30 15.66 0.26 -26.63 16 11 N -0.70 -22.05 3.17 -434.92 -1.38 -23.43 16 12 C 0.15 6.16 3.01 46.60 0.14 6.30 16 13 H 0.03 1.37 8.00 -2.39 -0.02 1.35 16 14 C -0.13 -5.08 5.94 32.21 0.19 -4.89 16 15 C 0.12 4.85 5.48 46.23 0.25 5.10 16 16 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 17 C -0.12 -3.64 6.44 32.21 0.21 -3.43 16 18 C -0.13 -4.31 6.29 32.21 0.20 -4.11 16 19 C 0.16 6.86 4.46 46.23 0.21 7.07 16 20 H 0.11 5.59 5.93 -2.38 -0.01 5.58 16 21 N -0.61 -30.36 2.98 -615.22 -1.83 -32.19 16 22 C -0.23 -12.51 10.55 84.04 0.89 -11.62 16 23 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 24 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 25 N -0.94 -55.15 10.76 21.65 0.23 -54.92 16 26 Si 0.98 45.54 29.56 68.60 2.03 47.56 16 27 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 28 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 30 H 0.07 1.76 5.16 -2.38 -0.01 1.74 16 31 H 0.02 0.69 7.58 -2.39 -0.02 0.67 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.19 7.85 -2.39 -0.02 1.17 16 34 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.41 10.01 5.05 -92.71 -0.47 9.54 16 38 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 39 H 0.07 2.68 7.64 -2.39 -0.02 2.66 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.08 2.15 7.82 -2.39 -0.02 2.13 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 43 H 0.09 2.11 5.45 -2.39 -0.01 2.09 16 44 H 0.25 14.19 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -75.79 335.77 2.89 -72.89 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.53 Total: 24.26 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 4.45 Total: 4.83 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -2.97 Total: -110.53 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -1.14 Total: -39.01 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.79 2.89 -72.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096031821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.570 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds