Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.67378 * 2 1 4 4 C 1.55000 * 110.61511 * 237.04212 * 2 1 3 5 5 C 1.54810 * 102.09093 * 204.47580 * 4 2 1 6 6 C 1.54106 * 104.18892 * 20.87794 * 5 4 2 7 7 H 1.08998 * 109.87715 * 242.45809 * 6 5 4 8 8 C 1.50691 * 109.87885 * 121.45576 * 6 5 4 9 9 O 1.21283 * 119.99970 * 245.00179 * 8 6 5 10 10 N 1.34773 * 120.00087 * 65.00000 * 8 6 5 11 11 C 1.46503 * 120.00014 * 180.02562 * 10 8 6 12 12 H 1.09001 * 110.68913 * 37.05529 * 11 10 8 13 13 C 1.55483 * 110.60904 * 160.19752 * 11 10 8 14 14 C 1.55847 * 103.32795 * 118.41288 * 13 11 10 15 15 H 1.08995 * 116.12866 * 159.23158 * 14 13 11 16 16 C 1.55385 * 105.04654 * 288.04147 * 14 13 11 17 17 C 1.54850 * 103.48784 * 72.07298 * 16 14 13 18 18 C 1.55847 * 110.62731 * 274.06672 * 11 10 8 19 19 H 1.09002 * 116.12361 * 82.35843 * 18 11 10 20 20 N 1.50236 * 101.05331 * 208.57312 * 18 11 10 21 21 C 1.36932 * 130.84214 * 233.93365 * 20 18 11 22 22 H 1.08006 * 119.99770 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00393 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99984 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00199 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47265 * 270.00298 * 25 23 21 27 27 H 1.48496 * 109.47054 * 29.99966 * 25 23 21 28 28 H 1.48498 * 109.47183 * 150.00453 * 25 23 21 29 29 O 1.43743 * 107.29073 * 2.03166 * 6 5 4 30 30 H 1.08996 * 109.47292 * 182.96245 * 1 2 3 31 31 H 1.09000 * 109.47170 * 302.96196 * 1 2 3 32 32 H 1.08997 * 109.47131 * 62.95812 * 1 2 3 33 33 H 1.09000 * 110.91158 * 86.27492 * 4 2 1 34 34 H 1.08998 * 110.90722 * 322.67219 * 4 2 1 35 35 H 1.09004 * 110.48789 * 262.20613 * 5 4 2 36 36 H 1.08997 * 110.48882 * 139.55310 * 5 4 2 37 37 H 0.96997 * 120.00351 * 0.02562 * 10 8 6 38 38 H 1.09000 * 110.61193 * 0.02562 * 13 11 10 39 39 H 1.08999 * 110.89166 * 236.96590 * 13 11 10 40 40 H 1.09004 * 110.71577 * 313.52187 * 16 14 13 41 41 H 1.09003 * 110.63444 * 190.59019 * 16 14 13 42 42 H 1.08998 * 110.63134 * 241.38870 * 17 16 14 43 43 H 1.09004 * 110.76509 * 118.42603 * 17 16 14 44 44 H 0.96995 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7892 -1.2173 5 6 3.4794 -1.2167 -0.7237 6 6 3.3840 -1.1255 0.8117 7 1 4.0873 -0.3802 1.1831 8 6 3.6889 -2.4679 1.4246 9 8 2.8271 -3.0668 2.0325 10 7 4.9192 -3.0030 1.2973 11 6 5.2155 -4.3084 1.8928 12 1 4.3563 -4.9739 1.8089 13 6 6.4699 -4.9416 1.2272 14 6 7.4762 -5.0736 2.4100 15 1 8.2816 -5.7957 2.2766 16 6 7.9287 -3.6195 2.7188 17 6 6.6817 -2.9868 3.3841 18 6 5.6421 -4.1479 3.3831 19 1 4.8323 -4.0547 4.1068 20 7 6.5409 -5.3394 3.5554 21 6 6.5183 -6.3524 4.4764 22 1 5.7566 -6.3694 5.2419 23 6 7.4743 -7.3576 4.4262 24 7 8.4028 -7.3367 3.4936 25 14 7.4439 -8.7392 5.6830 26 1 8.2667 -8.3571 6.8587 27 1 6.0447 -8.9833 6.1165 28 1 7.9961 -9.9754 5.0731 29 8 2.0385 -0.7354 1.1336 30 1 -0.3634 -1.0262 0.0531 31 1 -0.3633 0.5591 0.8622 32 1 -0.3633 0.4672 -0.9153 33 1 2.1508 -0.1475 -2.0951 34 1 1.4549 -1.6604 -1.4261 35 1 4.2406 -0.5331 -1.0998 36 1 3.6974 -2.2391 -1.0323 37 1 5.6086 -2.5240 0.8115 38 1 6.8689 -4.2827 0.4560 39 1 6.2362 -5.9213 0.8107 40 1 8.1831 -3.0915 1.7998 41 1 8.7736 -3.6183 3.4075 42 1 6.3177 -2.1450 2.7950 43 1 6.9052 -2.6724 4.4036 44 1 9.0706 -8.0393 3.4582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096038503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -35.600072 kcal Electronic energy + Delta-G solvation = -24764.963824 eV Core-core repulsion = 21297.526739 eV Total energy + Delta-G solvation = -3467.437085 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45890 -39.36626 -37.78388 -33.96943 -32.52810 -32.39579 -31.74154 -29.30303 -29.02598 -27.90931 -26.38751 -24.15169 -22.71940 -21.46168 -21.34364 -20.41669 -19.47764 -18.57478 -17.47265 -16.88428 -16.57975 -16.14666 -15.36297 -14.82469 -14.68281 -14.40142 -14.16593 -14.01567 -13.68217 -13.43167 -12.72599 -12.57305 -12.29239 -12.25102 -11.93420 -11.75480 -11.65989 -11.46934 -11.16521 -11.09376 -11.02203 -10.90974 -10.87735 -10.81517 -10.20270 -10.14028 -10.07038 -9.81538 -9.41815 -9.34126 -9.15696 -8.92425 -8.48809 -6.90203 -5.71643 -3.09432 2.83056 3.10708 3.41110 3.46295 3.48224 3.86453 4.26658 4.45384 4.51149 4.59429 4.79432 4.89126 5.12746 5.15179 5.22221 5.26035 5.39745 5.43010 5.46686 5.55714 5.61519 5.70128 5.81949 5.82302 5.86540 5.93892 5.97250 6.07902 6.12179 6.31208 6.35603 6.54068 6.61752 6.65961 6.71158 6.82719 6.98579 7.02080 7.28402 7.54072 7.75369 7.86195 8.18025 8.53601 9.11921 9.74346 10.54739 11.38105 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.003557 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.737749 B = 7869.283140 C = 8198.079557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.149 4.149 5 C -0.148 4.148 6 C 0.061 3.939 7 H 0.092 0.908 8 C 0.507 3.493 9 O -0.522 6.522 10 N -0.711 5.711 11 C 0.130 3.870 12 H 0.082 0.918 13 C -0.139 4.139 14 C 0.153 3.847 15 H 0.155 0.845 16 C -0.137 4.137 17 C -0.131 4.131 18 C 0.128 3.872 19 H 0.085 0.915 20 N -0.590 5.590 21 C -0.209 4.209 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.917 3.083 26 H -0.290 1.290 27 H -0.281 1.281 28 H -0.291 1.291 29 O -0.344 6.344 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.394 0.606 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 15.630 -11.938 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.089 0.911 4 C -0.187 4.187 5 C -0.186 4.186 6 C -0.001 4.001 7 H 0.109 0.891 8 C 0.292 3.708 9 O -0.397 6.397 10 N -0.363 5.363 11 C 0.024 3.976 12 H 0.100 0.900 13 C -0.179 4.179 14 C 0.046 3.954 15 H 0.171 0.829 16 C -0.176 4.176 17 C -0.171 4.171 18 C 0.019 3.981 19 H 0.103 0.897 20 N -0.311 5.311 21 C -0.337 4.337 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.573 5.573 25 Si 0.747 3.253 26 H -0.217 1.217 27 H -0.207 1.207 28 H -0.217 1.217 29 O -0.262 6.262 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.228 0.772 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.966 14.822 -11.132 20.176 hybrid contribution 0.498 -0.285 0.235 0.620 sum -7.468 14.537 -10.897 19.643 Atomic orbital electron populations 1.21760 0.92945 1.03356 1.02270 1.23202 0.95561 0.95164 0.85025 0.91086 1.23193 0.95936 1.01038 0.98519 1.22942 0.98561 1.03761 0.93314 1.22620 0.87091 0.95204 0.95198 0.89054 1.20336 0.82806 0.86896 0.80803 1.90721 1.46255 1.61931 1.40776 1.46159 1.11812 1.22041 1.56325 1.22732 0.97981 0.82023 0.94871 0.90030 1.23379 0.96375 0.99378 0.98726 1.23670 0.93699 0.93608 0.84376 0.82864 1.22984 0.97096 0.99125 0.98419 1.22921 0.97217 0.97398 0.99515 1.23198 0.92978 0.88429 0.93501 0.89671 1.46483 1.28997 1.23522 1.32055 1.19077 1.10410 0.98996 1.05199 0.90298 1.24689 0.97854 0.99054 0.99186 1.69432 1.18175 1.34772 1.34912 0.86024 0.77520 0.81358 0.80351 1.21710 1.20706 1.21678 1.89037 1.26053 1.73007 1.38082 0.91475 0.91768 0.91144 0.89943 0.90141 0.89634 0.89740 0.77175 0.92778 0.91580 0.93655 0.92693 0.93142 0.93082 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.66 37.16 0.36 -0.87 16 2 C 0.07 0.65 3.98 -25.67 -0.10 0.55 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -1.22 6.59 -24.72 -0.16 -1.38 16 5 C -0.15 -1.29 6.61 -25.20 -0.17 -1.46 16 6 C 0.06 0.73 3.84 -27.31 -0.10 0.63 16 7 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 8 C 0.51 8.15 6.95 -10.99 -0.08 8.07 16 9 O -0.52 -11.02 16.26 -14.02 -0.23 -11.24 16 10 N -0.71 -10.50 3.61 -51.07 -0.18 -10.68 16 11 C 0.13 2.45 3.10 -65.09 -0.20 2.25 16 12 H 0.08 1.75 7.71 -51.93 -0.40 1.35 16 13 C -0.14 -2.61 6.23 -23.89 -0.15 -2.75 16 14 C 0.15 3.43 4.69 -63.05 -0.30 3.14 16 15 H 0.15 3.93 5.52 -51.93 -0.29 3.64 16 16 C -0.14 -2.62 6.42 -24.49 -0.16 -2.78 16 17 C -0.13 -2.44 6.33 -24.23 -0.15 -2.59 16 18 C 0.13 2.74 5.35 -62.80 -0.34 2.41 16 19 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 20 N -0.59 -14.85 2.99 -146.08 -0.44 -15.28 16 21 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 22 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.92 -26.25 10.47 55.49 0.58 -25.67 16 25 Si 0.92 22.19 29.55 -169.99 -5.02 17.17 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 O -0.34 -4.84 10.44 -54.81 -0.57 -5.42 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.72 8.06 -51.93 -0.42 0.31 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.80 7.69 -51.93 -0.40 0.40 16 37 H 0.39 4.59 8.02 -40.82 -0.33 4.26 16 38 H 0.05 0.83 7.33 -51.93 -0.38 0.45 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.04 0.72 7.80 -51.93 -0.41 0.32 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -32.72 344.77 -9.62 -42.34 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.15 Total: 4.83 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.80 Total: -1.24 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.04 Total: -51.63 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.80 Total: -16.66 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.72 -9.62 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096038503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.736 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds