Wall clock time and date at job start Tue Mar 31 2020 06:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.67378 * 2 1 4 4 C 1.55000 * 110.61511 * 237.04212 * 2 1 3 5 5 C 1.54810 * 102.09093 * 204.47580 * 4 2 1 6 6 C 1.54106 * 104.18892 * 20.87794 * 5 4 2 7 7 H 1.08998 * 109.87715 * 242.45809 * 6 5 4 8 8 C 1.50691 * 109.87885 * 121.45576 * 6 5 4 9 9 O 1.21283 * 119.99970 * 245.00179 * 8 6 5 10 10 N 1.34773 * 120.00087 * 65.00000 * 8 6 5 11 11 C 1.46503 * 120.00014 * 180.02562 * 10 8 6 12 12 H 1.09001 * 110.68913 * 37.05529 * 11 10 8 13 13 C 1.55483 * 110.60904 * 160.19752 * 11 10 8 14 14 C 1.55847 * 103.32795 * 118.41288 * 13 11 10 15 15 H 1.08995 * 116.12866 * 159.23158 * 14 13 11 16 16 C 1.55385 * 105.04654 * 288.04147 * 14 13 11 17 17 C 1.54850 * 103.48784 * 72.07298 * 16 14 13 18 18 C 1.55847 * 110.62731 * 274.06672 * 11 10 8 19 19 H 1.09002 * 116.12361 * 82.35843 * 18 11 10 20 20 N 1.50236 * 101.05331 * 208.57312 * 18 11 10 21 21 C 1.36932 * 130.84214 * 233.93365 * 20 18 11 22 22 H 1.08006 * 119.99770 * 359.97438 * 21 20 18 23 23 C 1.38807 * 120.00393 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99984 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00199 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47265 * 270.00298 * 25 23 21 27 27 H 1.48496 * 109.47054 * 29.99966 * 25 23 21 28 28 H 1.48498 * 109.47183 * 150.00453 * 25 23 21 29 29 O 1.43743 * 107.29073 * 2.03166 * 6 5 4 30 30 H 1.08996 * 109.47292 * 182.96245 * 1 2 3 31 31 H 1.09000 * 109.47170 * 302.96196 * 1 2 3 32 32 H 1.08997 * 109.47131 * 62.95812 * 1 2 3 33 33 H 1.09000 * 110.91158 * 86.27492 * 4 2 1 34 34 H 1.08998 * 110.90722 * 322.67219 * 4 2 1 35 35 H 1.09004 * 110.48789 * 262.20613 * 5 4 2 36 36 H 1.08997 * 110.48882 * 139.55310 * 5 4 2 37 37 H 0.96997 * 120.00351 * 0.02562 * 10 8 6 38 38 H 1.09000 * 110.61193 * 0.02562 * 13 11 10 39 39 H 1.08999 * 110.89166 * 236.96590 * 13 11 10 40 40 H 1.09004 * 110.71577 * 313.52187 * 16 14 13 41 41 H 1.09003 * 110.63444 * 190.59019 * 16 14 13 42 42 H 1.08998 * 110.63134 * 241.38870 * 17 16 14 43 43 H 1.09004 * 110.76509 * 118.42603 * 17 16 14 44 44 H 0.96995 * 119.99930 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7892 -1.2173 5 6 3.4794 -1.2167 -0.7237 6 6 3.3840 -1.1255 0.8117 7 1 4.0873 -0.3802 1.1831 8 6 3.6889 -2.4679 1.4246 9 8 2.8271 -3.0668 2.0325 10 7 4.9192 -3.0030 1.2973 11 6 5.2155 -4.3084 1.8928 12 1 4.3563 -4.9739 1.8089 13 6 6.4699 -4.9416 1.2272 14 6 7.4762 -5.0736 2.4100 15 1 8.2816 -5.7957 2.2766 16 6 7.9287 -3.6195 2.7188 17 6 6.6817 -2.9868 3.3841 18 6 5.6421 -4.1479 3.3831 19 1 4.8323 -4.0547 4.1068 20 7 6.5409 -5.3394 3.5554 21 6 6.5183 -6.3524 4.4764 22 1 5.7566 -6.3694 5.2419 23 6 7.4743 -7.3576 4.4262 24 7 8.4028 -7.3367 3.4936 25 14 7.4439 -8.7392 5.6830 26 1 8.2667 -8.3571 6.8587 27 1 6.0447 -8.9833 6.1165 28 1 7.9961 -9.9754 5.0731 29 8 2.0385 -0.7354 1.1336 30 1 -0.3634 -1.0262 0.0531 31 1 -0.3633 0.5591 0.8622 32 1 -0.3633 0.4672 -0.9153 33 1 2.1508 -0.1475 -2.0951 34 1 1.4549 -1.6604 -1.4261 35 1 4.2406 -0.5331 -1.0998 36 1 3.6974 -2.2391 -1.0323 37 1 5.6086 -2.5240 0.8115 38 1 6.8689 -4.2827 0.4560 39 1 6.2362 -5.9213 0.8107 40 1 8.1831 -3.0915 1.7998 41 1 8.7736 -3.6183 3.4075 42 1 6.3177 -2.1450 2.7950 43 1 6.9052 -2.6724 4.4036 44 1 9.0706 -8.0393 3.4582 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096038503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:17 Heat of formation + Delta-G solvation = -56.498830 kcal Electronic energy + Delta-G solvation = -24765.870063 eV Core-core repulsion = 21297.526739 eV Total energy + Delta-G solvation = -3468.343323 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69206 -40.64589 -39.09777 -35.51397 -34.29913 -33.24111 -32.64845 -31.02394 -30.69581 -29.38602 -27.47168 -26.03064 -23.61930 -22.81601 -22.15072 -21.80551 -21.12353 -20.18226 -19.03142 -18.22295 -17.54197 -17.29880 -16.85904 -16.57856 -16.09636 -15.82316 -15.51066 -15.10672 -14.75611 -14.49335 -14.09090 -13.96300 -13.48803 -13.37787 -13.31668 -13.17770 -12.87867 -12.82334 -12.63203 -12.62467 -12.42325 -12.35725 -12.00777 -11.91322 -11.81736 -11.77723 -11.55151 -11.18571 -11.07765 -11.01230 -10.79269 -10.41534 -10.00530 -8.86938 -7.81026 -5.20223 1.45093 1.45942 1.54680 1.61397 1.96759 2.48259 2.99704 3.32139 3.46526 3.54622 3.73172 3.89994 3.92451 3.98127 4.09825 4.14947 4.24303 4.37731 4.41681 4.45037 4.48861 4.60695 4.62712 4.72102 4.79943 4.80908 4.92605 4.96747 4.98975 5.04581 5.06674 5.14779 5.20667 5.22299 5.28473 5.32068 5.45926 5.54083 5.74957 5.88582 5.93221 6.27434 6.64931 7.04976 7.32653 7.67670 8.53890 9.25756 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032636 B = 0.003557 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.737749 B = 7869.283140 C = 8198.079557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 H 0.096 0.904 4 C -0.146 4.146 5 C -0.142 4.142 6 C 0.063 3.937 7 H 0.123 0.877 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.691 5.691 11 C 0.148 3.852 12 H 0.047 0.953 13 C -0.122 4.122 14 C 0.137 3.863 15 H 0.122 0.878 16 C -0.124 4.124 17 C -0.117 4.117 18 C 0.116 3.884 19 H 0.058 0.942 20 N -0.619 5.619 21 C -0.227 4.227 22 H 0.067 0.933 23 C -0.061 4.061 24 N -0.942 5.942 25 Si 0.975 3.025 26 H -0.287 1.287 27 H -0.279 1.279 28 H -0.289 1.289 29 O -0.387 6.387 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.075 0.925 37 H 0.417 0.583 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.035 0.965 42 H 0.089 0.911 43 H 0.039 0.961 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 18.515 -14.288 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.003 3.997 3 H 0.114 0.886 4 C -0.184 4.184 5 C -0.180 4.180 6 C 0.002 3.998 7 H 0.140 0.860 8 C 0.290 3.710 9 O -0.461 6.461 10 N -0.345 5.345 11 C 0.041 3.959 12 H 0.065 0.935 13 C -0.162 4.162 14 C 0.031 3.969 15 H 0.139 0.861 16 C -0.163 4.163 17 C -0.156 4.156 18 C 0.008 3.992 19 H 0.077 0.923 20 N -0.341 5.341 21 C -0.357 4.357 22 H 0.085 0.915 23 C -0.254 4.254 24 N -0.592 5.592 25 Si 0.804 3.196 26 H -0.214 1.214 27 H -0.205 1.205 28 H -0.215 1.215 29 O -0.306 6.306 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.094 0.906 37 H 0.255 0.745 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.054 0.946 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.293 17.766 -13.527 23.490 hybrid contribution 0.208 -1.154 0.974 1.524 sum -7.085 16.612 -12.554 21.994 Atomic orbital electron populations 1.21807 0.92870 1.02198 1.03538 1.23525 0.95851 0.96072 0.84296 0.88629 1.23214 0.95235 1.00833 0.99091 1.23019 0.99986 1.04462 0.90509 1.22782 0.87155 0.92629 0.97230 0.85965 1.21289 0.81995 0.88119 0.79584 1.90702 1.48083 1.63892 1.43471 1.45845 1.12428 1.20486 1.55785 1.22153 0.96684 0.83540 0.93565 0.93510 1.23205 0.95024 0.99594 0.98332 1.23621 0.93441 0.94903 0.84924 0.86086 1.22879 0.96249 0.97170 1.00040 1.22828 0.95877 0.97116 0.99771 1.23319 0.92792 0.88666 0.94460 0.92326 1.46745 1.30759 1.24038 1.32593 1.19281 1.10221 1.00337 1.05812 0.91468 1.25389 0.97867 1.01046 1.01095 1.69653 1.18457 1.35104 1.35949 0.85117 0.77390 0.78740 0.78311 1.21414 1.20451 1.21550 1.89010 1.27220 1.73841 1.40521 0.93644 0.92266 0.88304 0.86627 0.91843 0.85596 0.90574 0.74489 0.88006 0.93507 0.88929 0.94649 0.89317 0.94175 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.66 71.98 0.69 -1.58 16 2 C 0.06 0.97 3.98 31.28 0.12 1.10 16 3 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.15 -1.89 6.59 31.90 0.21 -1.68 16 5 C -0.14 -1.88 6.61 31.59 0.21 -1.67 16 6 C 0.06 1.33 3.84 30.22 0.12 1.45 16 7 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 8 C 0.50 15.51 6.95 87.65 0.61 16.12 16 9 O -0.58 -25.27 16.26 15.68 0.25 -25.01 16 10 N -0.69 -18.69 3.61 -433.88 -1.57 -20.26 16 11 C 0.15 5.54 3.10 46.83 0.15 5.68 16 12 H 0.05 2.09 7.71 -2.39 -0.02 2.07 16 13 C -0.12 -4.41 6.23 32.43 0.20 -4.21 16 14 C 0.14 6.11 4.69 46.06 0.22 6.33 16 15 H 0.12 6.32 5.52 -2.39 -0.01 6.30 16 16 C -0.12 -4.47 6.42 32.05 0.21 -4.27 16 17 C -0.12 -4.13 6.33 32.21 0.20 -3.93 16 18 C 0.12 5.04 5.35 46.23 0.25 5.29 16 19 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 20 N -0.62 -32.09 2.99 -616.07 -1.84 -33.93 16 21 C -0.23 -13.21 10.59 84.03 0.89 -12.32 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 24 N -0.94 -54.93 10.47 21.65 0.23 -54.70 16 25 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 28 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 29 O -0.39 -10.35 10.44 -130.26 -1.36 -11.71 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.03 8.06 -2.39 -0.02 1.01 16 35 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.16 7.69 -2.39 -0.02 1.14 16 37 H 0.42 7.60 8.02 -92.71 -0.74 6.85 16 38 H 0.10 2.68 7.33 -2.39 -0.02 2.67 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.09 2.47 7.80 -2.38 -0.02 2.45 16 41 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 2.44 6.48 -2.39 -0.02 2.43 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -77.60 344.77 2.53 -75.07 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.25 Total: 18.38 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 4.54 Total: 3.29 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.18 Total: -108.90 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.10 Total: -36.72 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.60 2.53 -75.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096038503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.567 kcal (2) G-P(sol) polarization free energy of solvation -77.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds