Wall clock time and date at job start Tue Mar 31 2020 07:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.43749 * 2 1 4 4 C 1.54806 * 110.49094 * 237.45316 * 2 1 3 5 5 C 1.54993 * 102.09709 * 220.44432 * 4 2 1 6 6 O 1.44387 * 103.48989 * 37.02213 * 5 4 2 7 7 C 1.43748 * 106.97468 * 319.94317 * 6 5 4 8 8 H 1.08997 * 110.00102 * 267.02033 * 7 6 5 9 9 C 1.50700 * 109.87784 * 145.93694 * 7 6 5 10 10 O 1.21274 * 120.00008 * 357.16837 * 9 7 6 11 11 N 1.34773 * 119.99470 * 177.16661 * 9 7 6 12 12 C 1.46500 * 119.99592 * 180.02562 * 11 9 7 13 13 H 1.08996 * 110.56027 * 36.44315 * 12 11 9 14 14 C 1.54855 * 110.62940 * 273.54552 * 12 11 9 15 15 C 1.55844 * 103.45011 * 241.51293 * 14 12 11 16 16 H 1.08997 * 115.56412 * 158.80628 * 15 14 12 17 17 C 1.55846 * 105.06161 * 288.17325 * 15 14 12 18 18 C 1.54851 * 103.44600 * 71.82024 * 17 15 14 19 19 C 1.55843 * 110.62958 * 159.52135 * 12 11 9 20 20 H 1.09004 * 115.55901 * 319.67530 * 19 12 11 21 21 N 1.50236 * 101.05080 * 85.54784 * 19 12 11 22 22 C 1.36936 * 130.84140 * 233.98761 * 21 19 12 23 23 H 1.07995 * 120.00090 * 5.37486 * 22 21 19 24 24 C 1.38816 * 120.00423 * 185.36918 * 22 21 19 25 25 N 1.31619 * 119.99339 * 9.29444 * 24 22 21 26 26 Si 1.86797 * 120.00219 * 189.29097 * 24 22 21 27 27 H 1.48501 * 109.47054 * 94.05344 * 26 24 22 28 28 H 1.48501 * 109.46735 * 214.04952 * 26 24 22 29 29 H 1.48502 * 109.47106 * 334.04822 * 26 24 22 30 30 H 1.09001 * 109.46893 * 181.09587 * 1 2 3 31 31 H 1.09003 * 109.47122 * 301.09024 * 1 2 3 32 32 H 1.08997 * 109.47150 * 61.09486 * 1 2 3 33 33 H 1.09004 * 110.90592 * 338.64622 * 4 2 1 34 34 H 1.09002 * 110.90686 * 102.24038 * 4 2 1 35 35 H 1.08999 * 110.62215 * 155.52142 * 5 4 2 36 36 H 1.08994 * 110.61719 * 278.52203 * 5 4 2 37 37 H 0.96996 * 120.00390 * 359.97438 * 11 9 7 38 38 H 1.09008 * 110.62390 * 0.02562 * 14 12 11 39 39 H 1.08996 * 110.62905 * 122.85578 * 14 12 11 40 40 H 1.08995 * 110.62648 * 190.30776 * 17 15 14 41 41 H 1.08998 * 110.62801 * 313.33578 * 17 15 14 42 42 H 1.08997 * 110.63147 * 241.50974 * 18 17 15 43 43 H 1.09003 * 110.76200 * 118.54964 * 18 17 15 44 44 H 0.97003 * 119.99967 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0719 -0.7801 -1.2224 5 6 3.2660 -1.5553 -0.6096 6 8 2.7955 -1.9119 0.7081 7 6 2.0693 -0.7796 1.2150 8 1 2.7329 -0.1423 1.7994 9 6 0.9227 -1.2487 2.0730 10 8 0.7055 -2.4351 2.1992 11 7 0.1387 -0.3495 2.7002 12 6 -0.9756 -0.8055 3.5348 13 1 -0.7084 -1.7204 4.0637 14 6 -2.2465 -1.0227 2.6770 15 6 -3.2673 -0.0105 3.2788 16 1 -4.0937 0.2688 2.6252 17 6 -3.6594 -0.6062 4.6645 18 6 -2.3886 -0.3891 5.5223 19 6 -1.4018 0.3083 4.5381 20 1 -0.5851 0.8683 4.9938 21 7 -2.3536 1.1074 3.6940 22 6 -2.3800 2.4434 3.3949 23 1 -1.5762 3.0861 3.7222 24 6 -3.4399 2.9718 2.6707 25 7 -4.5037 2.2354 2.4292 26 14 -3.3564 4.7278 2.0392 27 1 -2.8407 4.7290 0.6466 28 1 -4.7144 5.3281 2.0647 29 1 -2.4477 5.5223 2.9043 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5307 0.8801 32 1 -0.3633 0.4967 -0.8996 33 1 1.3197 -1.4673 -1.6099 34 1 2.4103 -0.0967 -2.0012 35 1 3.4840 -2.4492 -1.1941 36 1 4.1456 -0.9151 -0.5429 37 1 0.3127 0.5994 2.5997 38 1 -2.0474 -0.7916 1.6305 39 1 -2.6094 -2.0453 2.7804 40 1 -4.5059 -0.0665 5.0889 41 1 -3.8856 -1.6688 4.5756 42 1 -1.9846 -1.3439 5.8589 43 1 -2.6028 0.2573 6.3735 44 1 -5.2443 2.6044 1.9229 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097867899.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:31 Heat of formation + Delta-G solvation = -50.250599 kcal Electronic energy + Delta-G solvation = -25604.165776 eV Core-core repulsion = 22136.093396 eV Total energy + Delta-G solvation = -3468.072380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.81036 -40.62627 -39.02484 -35.65694 -34.61148 -34.04939 -31.30426 -30.95495 -30.36020 -29.15503 -27.73703 -26.06921 -24.25250 -22.87534 -22.01888 -21.54450 -20.88647 -20.19211 -18.80662 -18.19692 -17.81276 -17.35222 -16.76719 -16.31404 -15.96011 -15.81328 -15.49112 -15.17285 -14.91011 -14.72415 -14.20080 -13.79715 -13.73457 -13.59097 -13.43563 -12.89362 -12.84493 -12.76690 -12.70342 -12.33657 -12.19911 -12.10281 -11.95982 -11.91872 -11.88416 -11.77207 -11.65995 -11.25080 -11.04536 -10.84399 -10.77754 -10.37092 -9.85283 -8.83896 -7.75578 -5.11699 1.51169 1.51929 1.59949 1.64051 2.04830 2.52887 3.06501 3.39288 3.42201 3.46131 3.66918 3.75805 4.00156 4.05590 4.09597 4.27124 4.28400 4.29615 4.42548 4.46726 4.51490 4.63964 4.64443 4.68732 4.72465 4.83290 4.84495 4.91265 4.92959 5.01975 5.10044 5.15232 5.17913 5.20078 5.30641 5.39713 5.55068 5.61673 5.70504 5.83929 5.91270 6.25015 6.65800 7.06655 7.30679 7.75106 8.62108 9.34401 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015808 B = 0.005801 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.800684 B = 4825.538517 C = 6024.271656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 H 0.122 0.878 4 C -0.146 4.146 5 C 0.040 3.960 6 O -0.383 6.383 7 C 0.063 3.937 8 H 0.119 0.881 9 C 0.514 3.486 10 O -0.579 6.579 11 N -0.697 5.697 12 C 0.143 3.857 13 H 0.079 0.921 14 C -0.136 4.136 15 C 0.147 3.853 16 H 0.107 0.893 17 C -0.130 4.130 18 C -0.121 4.121 19 C 0.129 3.871 20 H 0.106 0.894 21 N -0.605 5.605 22 C -0.212 4.212 23 H 0.088 0.912 24 C -0.064 4.064 25 N -0.946 5.946 26 Si 0.969 3.031 27 H -0.291 1.291 28 H -0.306 1.306 29 H -0.268 1.268 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.409 0.591 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 -3.097 -3.642 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.128 4.128 3 H 0.140 0.860 4 C -0.184 4.184 5 C -0.036 4.036 6 O -0.302 6.302 7 C 0.002 3.998 8 H 0.136 0.864 9 C 0.301 3.699 10 O -0.459 6.459 11 N -0.349 5.349 12 C 0.036 3.964 13 H 0.097 0.903 14 C -0.176 4.176 15 C 0.040 3.960 16 H 0.125 0.875 17 C -0.169 4.169 18 C -0.160 4.160 19 C 0.022 3.978 20 H 0.124 0.876 21 N -0.327 5.327 22 C -0.341 4.341 23 H 0.105 0.895 24 C -0.257 4.257 25 N -0.596 5.596 26 Si 0.799 3.201 27 H -0.218 1.218 28 H -0.233 1.233 29 H -0.193 1.193 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.246 0.754 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.586 -3.856 -3.543 14.561 hybrid contribution -0.744 1.297 -0.502 1.577 sum 12.843 -2.559 -4.045 13.706 Atomic orbital electron populations 1.22144 0.94901 1.00706 1.03388 1.22548 0.96011 1.01255 0.93008 0.86003 1.23250 0.97885 0.99538 0.97716 1.23875 0.96766 1.00938 0.81995 1.88961 1.71029 1.37060 1.33117 1.22865 0.92208 0.88611 0.96142 0.86375 1.20858 0.83484 0.85960 0.79596 1.90647 1.73005 1.18435 1.63772 1.46011 1.30220 1.09941 1.48750 1.22394 0.84960 0.97484 0.91568 0.90295 1.23349 0.97073 0.98551 0.98674 1.23362 0.93446 0.84918 0.94259 0.87542 1.22922 0.97150 0.99062 0.97807 1.22825 0.95875 1.00046 0.97275 1.23343 0.93149 0.90462 0.90873 0.87578 1.46690 1.28921 1.02777 1.54281 1.19344 1.03898 0.83405 1.27418 0.89465 1.25391 0.95923 1.01228 1.03189 1.69848 1.06921 1.37038 1.45748 0.85187 0.76109 0.80524 0.78265 1.21830 1.23324 1.19276 0.95051 0.91541 0.91561 0.91756 0.86933 0.87831 0.89297 0.75421 0.93771 0.92290 0.94547 0.91530 0.90295 0.92302 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.39 7.28 71.98 0.52 -3.87 16 2 C -0.11 -2.35 3.64 -9.80 -0.04 -2.38 16 3 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 4 C -0.15 -2.64 6.71 31.89 0.21 -2.43 16 5 C 0.04 0.73 7.72 72.66 0.56 1.29 16 6 O -0.38 -10.94 10.74 -130.26 -1.40 -12.33 16 7 C 0.06 1.61 3.84 30.22 0.12 1.73 16 8 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 9 C 0.51 17.24 5.46 87.66 0.48 17.71 16 10 O -0.58 -24.56 16.24 15.71 0.26 -24.31 16 11 N -0.70 -22.26 3.45 -434.93 -1.50 -23.75 16 12 C 0.14 5.04 2.73 46.61 0.13 5.17 16 13 H 0.08 2.83 7.36 -2.39 -0.02 2.81 16 14 C -0.14 -5.45 6.22 32.21 0.20 -5.25 16 15 C 0.15 6.63 4.67 46.23 0.22 6.84 16 16 H 0.11 5.71 5.73 -2.39 -0.01 5.70 16 17 C -0.13 -5.11 6.44 32.21 0.21 -4.90 16 18 C -0.12 -4.12 6.44 32.21 0.21 -3.91 16 19 C 0.13 4.65 5.04 46.23 0.23 4.88 16 20 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 21 N -0.61 -27.37 2.98 -615.24 -1.84 -29.20 16 22 C -0.21 -10.57 10.56 84.03 0.89 -9.68 16 23 H 0.09 4.09 7.85 -2.91 -0.02 4.07 16 24 C -0.06 -3.39 5.47 84.86 0.46 -2.93 16 25 N -0.95 -53.62 10.64 21.65 0.23 -53.39 16 26 Si 0.97 43.03 29.56 68.60 2.03 45.06 16 27 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 28 H -0.31 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 30 H 0.03 1.05 7.27 -2.39 -0.02 1.03 16 31 H 0.07 2.15 5.08 -2.39 -0.01 2.14 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 1.37 7.87 -2.39 -0.02 1.35 16 34 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.41 12.02 7.61 -92.71 -0.71 11.31 16 38 H 0.04 1.90 6.84 -2.38 -0.02 1.88 16 39 H 0.06 2.26 7.82 -2.39 -0.02 2.24 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 2.32 7.82 -2.39 -0.02 2.30 16 42 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 43 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.24 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -67.05 337.82 2.48 -64.58 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.30 Total: 31.07 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.40 Total: 2.28 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -3.10 Total: -106.34 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.14 Total: -36.64 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -67.05 2.48 -64.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097867899.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.325 kcal (2) G-P(sol) polarization free energy of solvation -67.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds