Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.42454 * 2 1 4 4 C 1.54479 * 110.37551 * 237.69025 * 2 1 3 5 5 C 1.54684 * 104.08051 * 217.10469 * 4 2 1 6 6 C 1.54475 * 103.98021 * 0.13131 * 5 4 2 7 7 H 1.09005 * 110.37330 * 264.97126 * 6 5 4 8 8 C 1.50694 * 110.37275 * 142.74358 * 6 5 4 9 9 O 1.21285 * 120.00076 * 246.54885 * 8 6 5 10 10 N 1.34774 * 120.00303 * 66.54553 * 8 6 5 11 11 C 1.46499 * 120.00268 * 180.02562 * 10 8 6 12 12 H 1.09003 * 110.56266 * 32.10047 * 11 10 8 13 13 C 1.54859 * 110.62679 * 269.02776 * 11 10 8 14 14 C 1.55838 * 103.44583 * 241.50917 * 13 11 10 15 15 H 1.09008 * 116.12953 * 159.14863 * 14 13 11 16 16 C 1.55846 * 105.06656 * 288.17446 * 14 13 11 17 17 C 1.54853 * 103.58572 * 71.74551 * 16 14 13 18 18 C 1.55843 * 110.62921 * 155.00443 * 11 10 8 19 19 H 1.08999 * 115.55949 * 319.67742 * 18 11 10 20 20 N 1.50239 * 101.05221 * 32.94002 * 14 13 11 21 21 C 1.36936 * 130.84246 * 126.05361 * 20 14 13 22 22 H 1.07997 * 120.00155 * 179.97438 * 21 20 14 23 23 C 1.38808 * 119.99686 * 359.97318 * 21 20 14 24 24 N 1.31623 * 120.00134 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00196 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46777 * 59.99856 * 25 23 21 27 27 H 1.48493 * 109.47758 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46897 * 300.00328 * 25 23 21 29 29 O 1.44429 * 104.90367 * 23.85317 * 6 5 4 30 30 H 1.09005 * 109.46666 * 299.14516 * 1 2 3 31 31 H 1.09003 * 109.46801 * 59.14148 * 1 2 3 32 32 H 1.08997 * 109.47322 * 179.14703 * 1 2 3 33 33 H 1.09005 * 110.50704 * 335.83802 * 4 2 1 34 34 H 1.08995 * 110.51022 * 98.40391 * 4 2 1 35 35 H 1.09001 * 110.60740 * 241.48378 * 5 4 2 36 36 H 1.08999 * 110.49020 * 118.72242 * 5 4 2 37 37 H 0.97003 * 119.99701 * 0.02562 * 10 8 6 38 38 H 1.09005 * 110.62716 * 123.01732 * 13 11 10 39 39 H 1.08998 * 110.62668 * 0.02562 * 13 11 10 40 40 H 1.09002 * 110.62915 * 190.31567 * 16 14 13 41 41 H 1.08994 * 110.62469 * 313.17551 * 16 14 13 42 42 H 1.08998 * 110.62783 * 118.56957 * 17 16 14 43 43 H 1.08998 * 110.62556 * 241.59208 * 17 16 14 44 44 H 0.97003 * 120.00038 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 6 2.0679 -0.7740 -1.2239 5 6 3.3206 -1.5049 -0.6862 6 6 3.3873 -1.0872 0.7995 7 1 4.0528 -0.2329 0.9241 8 6 3.8530 -2.2418 1.6487 9 8 3.0976 -2.7474 2.4516 10 7 5.1088 -2.7127 1.5158 11 6 5.5613 -3.8355 2.3408 12 1 4.7329 -4.5104 2.5564 13 6 6.2075 -3.3235 3.6517 14 6 7.6723 -3.8482 3.5626 15 1 8.4057 -3.3318 4.1820 16 6 7.5659 -5.3866 3.7878 17 6 6.9179 -5.9019 2.4791 18 6 6.7236 -4.5997 1.6383 19 1 6.6147 -4.7350 0.5622 20 7 7.9094 -3.7898 2.0801 21 6 8.9012 -3.1851 1.3550 22 1 8.9020 -3.2560 0.2774 23 6 9.9053 -2.4810 2.0051 24 7 9.9045 -2.3950 3.3185 25 14 11.2579 -1.6554 1.0160 26 1 10.6583 -0.6570 0.0946 27 1 12.2003 -0.9733 1.9389 28 1 11.9900 -2.6792 0.2278 29 8 2.0328 -0.7237 1.1444 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5271 -0.8822 32 1 -0.3634 -1.0275 -0.0153 33 1 1.3276 -1.4919 -1.5772 34 1 2.3407 -0.0841 -2.0224 35 1 4.2142 -1.1751 -1.2162 36 1 3.1997 -2.5846 -0.7744 37 1 5.7130 -2.3081 0.8738 38 1 5.7008 -3.7451 4.5198 39 1 6.1910 -2.2343 3.6881 40 1 8.5549 -5.8240 3.9246 41 1 6.9285 -5.6061 4.6442 42 1 7.5855 -6.5947 1.9670 43 1 5.9578 -6.3744 2.6863 44 1 10.6065 -1.9033 3.7728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097886670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = -42.025610 kcal Electronic energy + Delta-G solvation = -24780.596682 eV Core-core repulsion = 21312.880965 eV Total energy + Delta-G solvation = -3467.715717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.25996 -39.24562 -37.82579 -33.81866 -32.58990 -32.37995 -31.71791 -29.13671 -28.89092 -28.01437 -26.29862 -24.21242 -22.85204 -21.33402 -21.18774 -19.84446 -19.74669 -18.67627 -17.06510 -17.02714 -16.58711 -16.15356 -15.40832 -14.89108 -14.64214 -14.20169 -13.96163 -13.83961 -13.64491 -13.36769 -12.93574 -12.51269 -12.49676 -12.06926 -11.92490 -11.81417 -11.59453 -11.25668 -11.13032 -11.04961 -10.96730 -10.91857 -10.88453 -10.51556 -10.35692 -10.14430 -9.99127 -9.91746 -9.54604 -9.22552 -9.10325 -8.97479 -8.44923 -6.97256 -5.76715 -3.16170 2.91781 3.21230 3.33868 3.38658 3.40571 4.03768 4.38207 4.40209 4.57092 4.74098 4.90916 5.00051 5.11719 5.17266 5.26788 5.33015 5.35803 5.49051 5.59548 5.63780 5.69813 5.70411 5.82890 5.86145 5.87785 5.96674 6.05422 6.11102 6.14678 6.30861 6.42134 6.49296 6.60665 6.70592 6.74632 6.82942 6.95772 7.12794 7.32875 7.44380 7.77581 7.99744 8.15373 8.63162 9.04660 9.68028 10.49487 11.32111 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004453 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.591702 B = 6286.359836 C = 7260.814646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.057 3.943 7 H 0.093 0.907 8 C 0.515 3.485 9 O -0.534 6.534 10 N -0.703 5.703 11 C 0.129 3.871 12 H 0.080 0.920 13 C -0.143 4.143 14 C 0.154 3.846 15 H 0.153 0.847 16 C -0.139 4.139 17 C -0.128 4.128 18 C 0.126 3.874 19 H 0.087 0.913 20 N -0.591 5.591 21 C -0.216 4.216 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.915 3.085 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 O -0.342 6.342 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.403 0.597 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.620 2.089 -7.709 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 H 0.088 0.912 4 C -0.186 4.186 5 C -0.182 4.182 6 C -0.004 4.004 7 H 0.111 0.889 8 C 0.299 3.701 9 O -0.410 6.410 10 N -0.354 5.354 11 C 0.023 3.977 12 H 0.098 0.902 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.179 4.179 17 C -0.168 4.168 18 C 0.017 3.983 19 H 0.105 0.895 20 N -0.312 5.312 21 C -0.344 4.344 22 H 0.095 0.905 23 C -0.205 4.205 24 N -0.567 5.567 25 Si 0.746 3.254 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.213 1.213 29 O -0.260 6.260 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.237 0.763 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.987 1.862 -6.956 14.850 hybrid contribution 1.145 0.689 -0.993 1.665 sum -11.842 2.551 -7.949 14.489 Atomic orbital electron populations 1.21783 0.93041 1.03041 1.02356 1.23056 0.95571 0.95486 0.85203 0.91203 1.23033 0.97497 0.99781 0.98319 1.22928 0.99244 1.02171 0.93873 1.22852 0.86752 0.96824 0.93972 0.88937 1.20076 0.82381 0.84085 0.83534 1.90683 1.54517 1.59161 1.36629 1.45918 1.12291 1.35391 1.41753 1.22651 0.96172 0.87088 0.91755 0.90222 1.23448 0.99062 1.00646 0.95166 1.23765 0.93135 0.91605 0.86780 0.82994 1.23068 0.99130 1.00284 0.95385 1.22936 0.98992 0.97243 0.97613 1.23229 0.87709 0.91222 0.96121 0.89454 1.46532 1.24515 1.58121 1.02016 1.18946 1.00635 1.24896 0.89928 0.90467 1.24701 0.99006 1.01114 0.95679 1.69454 1.34755 1.46168 1.06281 0.86148 0.81564 0.79091 0.78615 1.21308 1.21608 1.21289 1.89286 1.25216 1.74142 1.37375 0.91751 0.91200 0.91682 0.90366 0.90281 0.89439 0.90104 0.76284 0.92787 0.92205 0.92652 0.93323 0.92440 0.92954 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.52 37.16 0.35 -0.95 16 2 C 0.06 0.69 3.92 -25.95 -0.10 0.59 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.15 -1.36 6.64 -25.07 -0.17 -1.53 16 5 C -0.14 -1.56 6.63 -25.07 -0.17 -1.73 16 6 C 0.06 0.81 3.70 -27.11 -0.10 0.71 16 7 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 8 C 0.51 9.10 7.07 -10.99 -0.08 9.02 16 9 O -0.53 -11.53 16.20 -13.66 -0.22 -11.76 16 10 N -0.70 -12.10 5.07 -51.40 -0.26 -12.37 16 11 C 0.13 2.44 2.80 -65.43 -0.18 2.25 16 12 H 0.08 1.52 7.23 -51.93 -0.38 1.15 16 13 C -0.14 -2.95 6.23 -24.24 -0.15 -3.10 16 14 C 0.15 3.48 4.72 -62.80 -0.30 3.19 16 15 H 0.15 3.96 5.52 -51.92 -0.29 3.67 16 16 C -0.14 -2.75 6.43 -24.23 -0.16 -2.91 16 17 C -0.13 -2.31 6.47 -24.03 -0.16 -2.47 16 18 C 0.13 2.42 5.07 -62.59 -0.32 2.10 16 19 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 20 N -0.59 -13.78 2.99 -145.59 -0.43 -14.21 16 21 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 22 H 0.08 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 24 N -0.92 -25.46 10.46 55.49 0.58 -24.88 16 25 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 O -0.34 -5.26 10.61 -54.44 -0.58 -5.84 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 37 H 0.40 6.55 8.66 -40.82 -0.35 6.20 16 38 H 0.05 1.05 7.82 -51.93 -0.41 0.65 16 39 H 0.06 1.34 7.98 -51.93 -0.41 0.92 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -30.84 347.60 -9.71 -40.55 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.24 Total: 8.11 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.77 Total: -0.85 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.11 Total: -51.45 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.80 Total: -17.59 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.84 -9.71 -40.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097886670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.477 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds