Wall clock time and date at job start Tue Mar 31 2020 06:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.42454 * 2 1 4 4 C 1.54479 * 110.37551 * 237.69025 * 2 1 3 5 5 C 1.54684 * 104.08051 * 217.10469 * 4 2 1 6 6 C 1.54475 * 103.98021 * 0.13131 * 5 4 2 7 7 H 1.09005 * 110.37330 * 264.97126 * 6 5 4 8 8 C 1.50694 * 110.37275 * 142.74358 * 6 5 4 9 9 O 1.21285 * 120.00076 * 246.54885 * 8 6 5 10 10 N 1.34774 * 120.00303 * 66.54553 * 8 6 5 11 11 C 1.46499 * 120.00268 * 180.02562 * 10 8 6 12 12 H 1.09003 * 110.56266 * 32.10047 * 11 10 8 13 13 C 1.54859 * 110.62679 * 269.02776 * 11 10 8 14 14 C 1.55838 * 103.44583 * 241.50917 * 13 11 10 15 15 H 1.09008 * 116.12953 * 159.14863 * 14 13 11 16 16 C 1.55846 * 105.06656 * 288.17446 * 14 13 11 17 17 C 1.54853 * 103.58572 * 71.74551 * 16 14 13 18 18 C 1.55843 * 110.62921 * 155.00443 * 11 10 8 19 19 H 1.08999 * 115.55949 * 319.67742 * 18 11 10 20 20 N 1.50239 * 101.05221 * 32.94002 * 14 13 11 21 21 C 1.36936 * 130.84246 * 126.05361 * 20 14 13 22 22 H 1.07997 * 120.00155 * 179.97438 * 21 20 14 23 23 C 1.38808 * 119.99686 * 359.97318 * 21 20 14 24 24 N 1.31623 * 120.00134 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00196 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46777 * 59.99856 * 25 23 21 27 27 H 1.48493 * 109.47758 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46897 * 300.00328 * 25 23 21 29 29 O 1.44429 * 104.90367 * 23.85317 * 6 5 4 30 30 H 1.09005 * 109.46666 * 299.14516 * 1 2 3 31 31 H 1.09003 * 109.46801 * 59.14148 * 1 2 3 32 32 H 1.08997 * 109.47322 * 179.14703 * 1 2 3 33 33 H 1.09005 * 110.50704 * 335.83802 * 4 2 1 34 34 H 1.08995 * 110.51022 * 98.40391 * 4 2 1 35 35 H 1.09001 * 110.60740 * 241.48378 * 5 4 2 36 36 H 1.08999 * 110.49020 * 118.72242 * 5 4 2 37 37 H 0.97003 * 119.99701 * 0.02562 * 10 8 6 38 38 H 1.09005 * 110.62716 * 123.01732 * 13 11 10 39 39 H 1.08998 * 110.62668 * 0.02562 * 13 11 10 40 40 H 1.09002 * 110.62915 * 190.31567 * 16 14 13 41 41 H 1.08994 * 110.62469 * 313.17551 * 16 14 13 42 42 H 1.08998 * 110.62783 * 118.56957 * 17 16 14 43 43 H 1.08998 * 110.62556 * 241.59208 * 17 16 14 44 44 H 0.97003 * 120.00038 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 6 2.0679 -0.7740 -1.2239 5 6 3.3206 -1.5049 -0.6862 6 6 3.3873 -1.0872 0.7995 7 1 4.0528 -0.2329 0.9241 8 6 3.8530 -2.2418 1.6487 9 8 3.0976 -2.7474 2.4516 10 7 5.1088 -2.7127 1.5158 11 6 5.5613 -3.8355 2.3408 12 1 4.7329 -4.5104 2.5564 13 6 6.2075 -3.3235 3.6517 14 6 7.6723 -3.8482 3.5626 15 1 8.4057 -3.3318 4.1820 16 6 7.5659 -5.3866 3.7878 17 6 6.9179 -5.9019 2.4791 18 6 6.7236 -4.5997 1.6383 19 1 6.6147 -4.7350 0.5622 20 7 7.9094 -3.7898 2.0801 21 6 8.9012 -3.1851 1.3550 22 1 8.9020 -3.2560 0.2774 23 6 9.9053 -2.4810 2.0051 24 7 9.9045 -2.3950 3.3185 25 14 11.2579 -1.6554 1.0160 26 1 10.6583 -0.6570 0.0946 27 1 12.2003 -0.9733 1.9389 28 1 11.9900 -2.6792 0.2278 29 8 2.0328 -0.7237 1.1444 30 1 -0.3633 0.5005 0.8976 31 1 -0.3633 0.5271 -0.8822 32 1 -0.3634 -1.0275 -0.0153 33 1 1.3276 -1.4919 -1.5772 34 1 2.3407 -0.0841 -2.0224 35 1 4.2142 -1.1751 -1.2162 36 1 3.1997 -2.5846 -0.7744 37 1 5.7130 -2.3081 0.8738 38 1 5.7008 -3.7451 4.5198 39 1 6.1910 -2.2343 3.6881 40 1 8.5549 -5.8240 3.9246 41 1 6.9285 -5.6061 4.6442 42 1 7.5855 -6.5947 1.9670 43 1 5.9578 -6.3744 2.6863 44 1 10.6065 -1.9033 3.7728 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097886670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:19 Heat of formation + Delta-G solvation = -60.780801 kcal Electronic energy + Delta-G solvation = -24781.409968 eV Core-core repulsion = 21312.880965 eV Total energy + Delta-G solvation = -3468.529003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.54937 -40.61862 -39.20253 -35.35460 -34.43117 -33.26796 -32.68412 -30.96750 -30.43446 -29.49768 -27.39835 -26.06634 -23.86134 -22.69927 -22.05742 -21.53018 -21.18256 -20.29950 -18.83501 -18.29050 -17.59982 -17.42881 -16.76636 -16.58020 -16.03195 -15.76444 -15.28142 -15.14721 -14.74628 -14.71154 -14.28026 -13.73597 -13.64583 -13.46841 -13.21760 -12.90265 -12.88203 -12.77893 -12.73874 -12.65710 -12.49084 -12.11001 -11.97782 -11.89481 -11.84601 -11.69773 -11.66457 -11.19212 -10.97814 -10.93382 -10.84779 -10.52398 -9.98166 -8.86150 -7.73530 -5.13906 1.51490 1.53124 1.55942 1.59231 1.98457 2.52474 3.03065 3.39330 3.45613 3.49604 3.64498 3.89592 3.96996 4.02060 4.08193 4.17427 4.26597 4.28297 4.44759 4.45905 4.48620 4.56691 4.62424 4.69367 4.77099 4.83288 4.89836 4.90876 4.96545 5.02017 5.09565 5.16766 5.16911 5.18597 5.26577 5.38367 5.52413 5.59321 5.68743 5.84750 5.90732 6.28119 6.61035 7.07223 7.24362 7.74672 8.60396 9.33738 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.004453 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.591702 B = 6286.359836 C = 7260.814646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.139 4.139 6 C 0.057 3.943 7 H 0.106 0.894 8 C 0.513 3.487 9 O -0.578 6.578 10 N -0.697 5.697 11 C 0.139 3.861 12 H 0.083 0.917 13 C -0.134 4.134 14 C 0.140 3.860 15 H 0.116 0.884 16 C -0.133 4.133 17 C -0.120 4.120 18 C 0.130 3.870 19 H 0.106 0.894 20 N -0.609 5.609 21 C -0.215 4.215 22 H 0.088 0.912 23 C -0.067 4.067 24 N -0.949 5.949 25 Si 0.975 3.025 26 H -0.276 1.276 27 H -0.303 1.303 28 H -0.282 1.282 29 O -0.380 6.380 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.409 0.591 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.657 2.061 -10.262 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.003 4.003 3 H 0.102 0.898 4 C -0.178 4.178 5 C -0.177 4.177 6 C -0.004 4.004 7 H 0.123 0.877 8 C 0.299 3.701 9 O -0.458 6.458 10 N -0.347 5.347 11 C 0.032 3.968 12 H 0.101 0.899 13 C -0.175 4.175 14 C 0.034 3.966 15 H 0.133 0.867 16 C -0.172 4.172 17 C -0.159 4.159 18 C 0.023 3.977 19 H 0.124 0.876 20 N -0.331 5.331 21 C -0.344 4.344 22 H 0.106 0.894 23 C -0.259 4.259 24 N -0.599 5.599 25 Si 0.804 3.196 26 H -0.202 1.202 27 H -0.230 1.230 28 H -0.209 1.209 29 O -0.299 6.299 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.244 0.756 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.043 1.826 -9.552 17.081 hybrid contribution 1.406 0.697 -0.164 1.578 sum -12.636 2.523 -9.716 16.139 Atomic orbital electron populations 1.21818 0.92089 1.02749 1.03393 1.23392 0.96471 0.95943 0.84536 0.89849 1.23043 0.96581 1.00043 0.98167 1.22960 1.01232 1.01923 0.91606 1.22912 0.86753 0.95560 0.95144 0.87655 1.20773 0.81777 0.84444 0.83092 1.90652 1.55630 1.60839 1.38647 1.45846 1.12453 1.34989 1.41411 1.22462 0.95894 0.87504 0.90907 0.89885 1.23317 0.98281 0.98976 0.96893 1.23588 0.93176 0.93415 0.86467 0.86655 1.22967 0.99011 0.97878 0.97384 1.22899 1.00290 0.96659 0.96089 1.23423 0.85882 0.91043 0.97395 0.87565 1.46713 1.25270 1.58692 1.02380 1.19339 1.00621 1.23736 0.90660 0.89383 1.25438 1.01378 1.02653 0.96471 1.69719 1.35140 1.47391 1.07644 0.85196 0.78972 0.78228 0.77158 1.20226 1.22999 1.20870 1.89258 1.25743 1.74974 1.39948 0.92525 0.88295 0.92681 0.89940 0.87445 0.87152 0.90972 0.75555 0.91897 0.94747 0.94251 0.91350 0.91974 0.90170 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.52 71.98 0.69 -1.64 16 2 C 0.05 1.03 3.92 31.10 0.12 1.16 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 4 C -0.14 -2.13 6.64 31.67 0.21 -1.92 16 5 C -0.14 -2.65 6.63 31.67 0.21 -2.44 16 6 C 0.06 1.54 3.70 30.35 0.11 1.65 16 7 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 8 C 0.51 17.82 7.07 87.66 0.62 18.44 16 9 O -0.58 -25.10 16.20 15.32 0.25 -24.85 16 10 N -0.70 -23.28 5.07 -434.91 -2.20 -25.49 16 11 C 0.14 5.06 2.80 46.61 0.13 5.19 16 12 H 0.08 3.03 7.23 -2.39 -0.02 3.02 16 13 C -0.13 -5.57 6.23 32.21 0.20 -5.37 16 14 C 0.14 6.43 4.72 46.23 0.22 6.65 16 15 H 0.12 6.27 5.52 -2.38 -0.01 6.26 16 16 C -0.13 -5.15 6.43 32.21 0.21 -4.95 16 17 C -0.12 -4.04 6.47 32.35 0.21 -3.83 16 18 C 0.13 4.73 5.07 46.36 0.23 4.97 16 19 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 20 N -0.61 -28.08 2.99 -614.54 -1.84 -29.92 16 21 C -0.21 -10.87 10.59 84.03 0.89 -9.98 16 22 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 24 N -0.95 -54.19 10.46 21.65 0.23 -53.97 16 25 Si 0.97 43.38 29.55 68.60 2.03 45.41 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 28 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 29 O -0.38 -11.41 10.61 -130.61 -1.39 -12.79 16 30 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 33 H 0.08 1.19 7.86 -2.38 -0.02 1.17 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.50 7.86 -2.39 -0.02 1.48 16 37 H 0.41 12.71 8.66 -92.71 -0.80 11.90 16 38 H 0.06 2.45 7.82 -2.38 -0.02 2.43 16 39 H 0.03 1.57 7.98 -2.39 -0.02 1.55 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.34 7.82 -2.39 -0.02 2.32 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 44 H 0.24 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -68.27 347.60 1.78 -66.49 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.19 Total: 30.27 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 4.52 Total: 4.84 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -3.81 Total: -109.37 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.14 Total: -37.64 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.27 1.78 -66.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097886670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.707 kcal (2) G-P(sol) polarization free energy of solvation -68.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds