Wall clock time and date at job start Tue Mar 31 2020 07:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47454 * 20.08557 * 3 2 1 5 5 C 1.42906 * 114.00036 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.46799 * 329.98948 * 5 4 3 7 7 C 1.52997 * 109.47321 * 89.99767 * 5 4 3 8 8 C 1.50706 * 109.46699 * 209.99772 * 5 4 3 9 9 O 1.21283 * 120.00236 * 354.99660 * 8 5 4 10 10 N 1.34774 * 119.99861 * 174.99836 * 8 5 4 11 11 C 1.46496 * 120.00367 * 180.02562 * 10 8 5 12 12 C 1.52999 * 109.47276 * 179.97438 * 11 10 8 13 13 H 1.09003 * 110.64062 * 54.30102 * 12 11 10 14 14 C 1.54321 * 110.72171 * 291.15486 * 12 11 10 15 15 N 1.47022 * 107.27230 * 219.44542 * 14 12 11 16 16 C 1.36941 * 125.64651 * 178.97626 * 15 14 12 17 17 H 1.07988 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99479 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00533 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99580 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47224 * 60.00412 * 20 18 16 22 22 H 1.48506 * 109.47361 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47767 * 300.00419 * 20 18 16 24 24 C 1.47427 * 108.70310 * 358.94046 * 15 14 12 25 25 C 1.55119 * 104.94206 * 24.00527 * 24 15 14 26 26 H 1.08996 * 110.94046 * 81.21807 * 25 24 15 27 27 C 1.53004 * 111.16279 * 205.13441 * 25 24 15 28 28 H 4.38437 * 5.44413 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47103 * 260.07751 * 3 2 1 30 30 H 1.09004 * 109.46835 * 140.08518 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99798 * 7 5 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47261 * 59.99970 * 7 5 4 34 34 H 0.97010 * 119.99902 * 0.02562 * 10 8 5 35 35 H 1.09001 * 109.46929 * 300.00101 * 11 10 8 36 36 H 1.09001 * 109.47382 * 59.99398 * 11 10 8 37 37 H 1.09008 * 109.88081 * 338.86234 * 14 12 11 38 38 H 1.09002 * 109.88370 * 100.02506 * 14 12 11 39 39 H 0.96998 * 120.00485 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36576 * 142.96743 * 24 15 14 41 41 H 1.09000 * 110.36590 * 265.29032 * 24 15 14 42 42 H 1.08999 * 109.47333 * 172.17301 * 27 25 24 43 43 H 1.09009 * 109.46717 * 292.17010 * 27 25 24 44 44 H 1.08990 * 109.47189 * 52.16306 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2644 -0.4627 5 6 4.5476 -1.3698 -0.5008 6 1 4.9797 -0.3869 -0.6884 7 6 5.0557 -1.9030 0.8402 8 6 4.9519 -2.3149 -1.6029 9 8 4.1038 -2.9154 -2.2284 10 7 6.2559 -2.4929 -1.8934 11 6 6.6490 -3.4111 -2.9650 12 6 8.1739 -3.4281 -3.0883 13 1 8.6344 -3.6607 -2.1281 14 6 8.6930 -2.0798 -3.6306 15 7 9.7863 -2.3779 -4.5673 16 6 10.5013 -1.4525 -5.2798 17 1 10.2774 -0.4011 -5.1768 18 6 11.5140 -1.8661 -6.1344 19 7 11.7866 -3.1475 -6.2603 20 14 12.4890 -0.6039 -7.1068 21 1 13.1682 0.3263 -6.1694 22 1 13.5045 -1.2972 -7.9396 23 1 11.5691 0.1628 -7.9851 24 6 9.9858 -3.8379 -4.6118 25 6 8.6256 -4.4411 -4.1734 26 1 7.9222 -4.4617 -5.0057 27 6 8.8074 -5.8385 -3.5773 28 1 -1.0497 -0.0003 -0.0003 29 1 3.0092 0.1779 1.0123 30 1 3.0089 0.7891 -0.6594 31 1 4.7632 -1.2194 1.6373 32 1 6.1423 -1.9838 0.8109 33 1 4.6235 -2.8860 1.0277 34 1 6.9342 -2.0129 -1.3928 35 1 6.2916 -4.4144 -2.7331 36 1 6.2123 -3.0786 -3.9068 37 1 7.8911 -1.5563 -4.1514 38 1 9.0653 -1.4683 -2.8088 39 1 12.4945 -3.4365 -6.8572 40 1 10.2343 -4.1562 -5.6243 41 1 10.7710 -4.1348 -3.9165 42 1 7.8625 -6.1785 -3.1536 43 1 9.1243 -6.5286 -4.3594 44 1 9.5651 -5.8038 -2.7946 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101958627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:45 Heat of formation + Delta-G solvation = -6.074654 kcal Electronic energy + Delta-G solvation = -23437.010422 eV Core-core repulsion = 19970.853655 eV Total energy + Delta-G solvation = -3466.156767 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08980 -38.40740 -37.65087 -34.67865 -33.76617 -33.00175 -31.62968 -30.76479 -29.09627 -27.42726 -26.08971 -25.32158 -24.10555 -22.61688 -20.65191 -19.85811 -19.38540 -18.85874 -17.43055 -17.17353 -16.74887 -16.04493 -15.58785 -15.43437 -14.87673 -14.69577 -14.24727 -13.86125 -13.63418 -13.42076 -13.14025 -12.91781 -12.65263 -12.56451 -12.52599 -11.91720 -11.72885 -11.55741 -11.42889 -11.15852 -10.97891 -10.90211 -10.85721 -10.79642 -10.25459 -10.10346 -10.03852 -9.92303 -9.83494 -9.60797 -9.34144 -8.97319 -8.66498 -6.85180 -5.66811 -3.08825 2.09039 2.50058 2.60372 3.01940 3.39034 3.43349 3.44651 3.73140 4.23554 4.46351 4.49920 4.62709 4.73441 4.83038 5.03811 5.09800 5.23718 5.25711 5.29147 5.36383 5.48230 5.57032 5.58895 5.75289 5.77520 5.86612 6.05720 6.11053 6.19253 6.25394 6.42269 6.51580 6.58195 6.59742 6.69186 6.78929 6.93350 7.26156 7.51245 7.52134 7.60944 7.85154 8.22900 8.35079 9.20496 9.81363 10.46198 11.36805 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.002904 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.846681 B = 9639.678584 C =10467.818744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.192 4.192 3 C 0.169 3.831 4 O -0.351 6.351 5 C 0.070 3.930 6 H 0.091 0.909 7 C -0.171 4.171 8 C 0.512 3.488 9 O -0.522 6.522 10 N -0.722 5.722 11 C 0.134 3.866 12 C -0.109 4.109 13 H 0.077 0.923 14 C 0.141 3.859 15 N -0.605 5.605 16 C -0.224 4.224 17 H 0.076 0.924 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.159 3.841 25 C -0.112 4.112 26 H 0.071 0.929 27 C -0.134 4.134 28 H 0.222 0.778 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.253 0.747 40 H 0.106 0.894 41 H 0.013 0.987 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.910 2.907 14.868 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.009 3.991 6 H 0.109 0.891 7 C -0.229 4.229 8 C 0.296 3.704 9 O -0.397 6.397 10 N -0.375 5.375 11 C 0.011 3.989 12 C -0.129 4.129 13 H 0.095 0.905 14 C 0.015 3.985 15 N -0.331 5.331 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.035 3.965 25 C -0.132 4.132 26 H 0.090 0.910 27 C -0.192 4.192 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.064 0.936 40 H 0.124 0.876 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.464 2.327 14.181 20.389 hybrid contribution 0.869 1.163 -0.095 1.455 sum -13.595 3.490 14.086 19.885 Atomic orbital electron populations 1.24966 0.95892 0.97758 1.00360 1.22435 0.93813 1.02065 1.00881 1.19187 0.85066 0.86718 0.99664 1.88122 1.19058 1.32930 1.86869 1.21946 0.82795 0.99391 0.94965 0.89130 1.22248 1.01982 1.03096 0.95555 1.20250 0.82853 0.83120 0.84200 1.90732 1.50221 1.47528 1.51204 1.46000 1.06694 1.46822 1.37981 1.21472 0.94850 0.92781 0.89844 1.22497 0.92497 0.98140 0.99742 0.90490 1.21339 0.91311 0.93378 0.92474 1.44478 1.37617 1.02946 1.48015 1.19018 1.10796 0.88158 1.17249 0.90604 1.24790 0.99235 0.96360 1.00261 1.69780 1.33520 1.12568 1.41160 0.86154 0.79540 0.80077 0.79720 1.21240 1.21553 1.21162 1.22022 0.89308 0.82444 1.02759 1.22640 1.01128 0.93146 0.96262 0.91024 1.21648 1.00454 0.96536 1.00565 0.76119 0.90583 0.90515 0.91153 0.90522 0.90952 0.76487 0.91533 0.91214 0.95812 0.96436 0.93650 0.87600 0.96929 0.93630 0.92651 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.19 -2.03 13.73 -37.12 -0.51 -2.54 16 3 C 0.17 1.53 6.22 34.37 0.21 1.75 16 4 O -0.35 -4.38 9.48 -55.09 -0.52 -4.90 16 5 C 0.07 0.71 3.13 -27.88 -0.09 0.62 16 6 H 0.09 0.66 7.79 -51.93 -0.40 0.26 16 7 C -0.17 -1.28 9.48 37.16 0.35 -0.93 16 8 C 0.51 7.06 7.18 -10.98 -0.08 6.98 16 9 O -0.52 -9.72 16.51 -14.30 -0.24 -9.95 16 10 N -0.72 -8.91 5.39 -60.29 -0.33 -9.24 16 11 C 0.13 1.95 5.00 -4.04 -0.02 1.93 16 12 C -0.11 -1.76 2.45 -88.78 -0.22 -1.98 16 13 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 14 C 0.14 2.78 6.64 -3.07 -0.02 2.76 16 15 N -0.60 -15.17 3.40 -169.94 -0.58 -15.75 16 16 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 19 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.16 3.76 5.37 -2.41 -0.01 3.75 16 25 C -0.11 -2.02 3.10 -88.35 -0.27 -2.29 16 26 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 27 C -0.13 -2.03 9.31 37.16 0.35 -1.69 16 28 H 0.22 1.12 7.80 -54.10 -0.42 0.69 16 29 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 30 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.07 0.40 7.87 -51.93 -0.41 -0.01 16 32 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 3.93 8.18 -40.82 -0.33 3.60 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 37 H 0.02 0.48 7.73 -51.92 -0.40 0.08 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.11 2.85 5.87 -51.93 -0.31 2.55 16 41 H 0.01 0.32 7.99 -51.93 -0.41 -0.10 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -34.54 368.48 -7.82 -42.36 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.26 Total: 0.44 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 0.01 Total: 0.67 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.34 Total: -51.03 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.76 Total: -14.86 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.54 -7.82 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101958627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.287 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds