Wall clock time and date at job start Tue Mar 31 2020 07:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42893 * 109.47454 * 20.08557 * 3 2 1 5 5 C 1.42906 * 114.00036 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.46799 * 329.98948 * 5 4 3 7 7 C 1.52997 * 109.47321 * 89.99767 * 5 4 3 8 8 C 1.50706 * 109.46699 * 209.99772 * 5 4 3 9 9 O 1.21283 * 120.00236 * 354.99660 * 8 5 4 10 10 N 1.34774 * 119.99861 * 174.99836 * 8 5 4 11 11 C 1.46496 * 120.00367 * 180.02562 * 10 8 5 12 12 C 1.52999 * 109.47276 * 179.97438 * 11 10 8 13 13 H 1.09003 * 110.64062 * 54.30102 * 12 11 10 14 14 C 1.54321 * 110.72171 * 291.15486 * 12 11 10 15 15 N 1.47022 * 107.27230 * 219.44542 * 14 12 11 16 16 C 1.36941 * 125.64651 * 178.97626 * 15 14 12 17 17 H 1.07988 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99479 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00533 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99580 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47224 * 60.00412 * 20 18 16 22 22 H 1.48506 * 109.47361 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47767 * 300.00419 * 20 18 16 24 24 C 1.47427 * 108.70310 * 358.94046 * 15 14 12 25 25 C 1.55119 * 104.94206 * 24.00527 * 24 15 14 26 26 H 1.08996 * 110.94046 * 81.21807 * 25 24 15 27 27 C 1.53004 * 111.16279 * 205.13441 * 25 24 15 28 28 H 4.38437 * 5.44413 * 180.02562 * 4 1 2 29 29 H 1.09002 * 109.47103 * 260.07751 * 3 2 1 30 30 H 1.09004 * 109.46835 * 140.08518 * 3 2 1 31 31 H 1.09002 * 109.47153 * 299.99798 * 7 5 4 32 32 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47261 * 59.99970 * 7 5 4 34 34 H 0.97010 * 119.99902 * 0.02562 * 10 8 5 35 35 H 1.09001 * 109.46929 * 300.00101 * 11 10 8 36 36 H 1.09001 * 109.47382 * 59.99398 * 11 10 8 37 37 H 1.09008 * 109.88081 * 338.86234 * 14 12 11 38 38 H 1.09002 * 109.88370 * 100.02506 * 14 12 11 39 39 H 0.96998 * 120.00485 * 180.02562 * 19 18 16 40 40 H 1.09002 * 110.36576 * 142.96743 * 24 15 14 41 41 H 1.09000 * 110.36590 * 265.29032 * 24 15 14 42 42 H 1.08999 * 109.47333 * 172.17301 * 27 25 24 43 43 H 1.09009 * 109.46717 * 292.17010 * 27 25 24 44 44 H 1.08990 * 109.47189 * 52.16306 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1229 -1.2644 -0.4627 5 6 4.5476 -1.3698 -0.5008 6 1 4.9797 -0.3869 -0.6884 7 6 5.0557 -1.9030 0.8402 8 6 4.9519 -2.3149 -1.6029 9 8 4.1038 -2.9154 -2.2284 10 7 6.2559 -2.4929 -1.8934 11 6 6.6490 -3.4111 -2.9650 12 6 8.1739 -3.4281 -3.0883 13 1 8.6344 -3.6607 -2.1281 14 6 8.6930 -2.0798 -3.6306 15 7 9.7863 -2.3779 -4.5673 16 6 10.5013 -1.4525 -5.2798 17 1 10.2774 -0.4011 -5.1768 18 6 11.5140 -1.8661 -6.1344 19 7 11.7866 -3.1475 -6.2603 20 14 12.4890 -0.6039 -7.1068 21 1 13.1682 0.3263 -6.1694 22 1 13.5045 -1.2972 -7.9396 23 1 11.5691 0.1628 -7.9851 24 6 9.9858 -3.8379 -4.6118 25 6 8.6256 -4.4411 -4.1734 26 1 7.9222 -4.4617 -5.0057 27 6 8.8074 -5.8385 -3.5773 28 1 -1.0497 -0.0003 -0.0003 29 1 3.0092 0.1779 1.0123 30 1 3.0089 0.7891 -0.6594 31 1 4.7632 -1.2194 1.6373 32 1 6.1423 -1.9838 0.8109 33 1 4.6235 -2.8860 1.0277 34 1 6.9342 -2.0129 -1.3928 35 1 6.2916 -4.4144 -2.7331 36 1 6.2123 -3.0786 -3.9068 37 1 7.8911 -1.5563 -4.1514 38 1 9.0653 -1.4683 -2.8088 39 1 12.4945 -3.4365 -6.8572 40 1 10.2343 -4.1562 -5.6243 41 1 10.7710 -4.1348 -3.9165 42 1 7.8625 -6.1785 -3.1536 43 1 9.1243 -6.5286 -4.3594 44 1 9.5651 -5.8038 -2.7946 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101958627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:44 Heat of formation + Delta-G solvation = -28.840272 kcal Electronic energy + Delta-G solvation = -23437.997613 eV Core-core repulsion = 19970.853655 eV Total energy + Delta-G solvation = -3467.143958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13471 -39.72293 -38.75405 -36.07055 -34.76460 -34.37612 -32.56002 -32.46039 -30.46129 -28.07252 -27.86317 -26.74906 -25.23767 -24.04821 -21.85727 -21.41836 -20.72308 -19.63026 -18.86139 -18.28702 -17.94500 -17.06966 -16.88110 -16.47717 -16.29372 -15.76688 -15.61553 -15.47046 -14.74222 -14.61155 -14.39135 -14.02129 -13.89517 -13.55574 -13.48226 -13.36967 -13.15930 -12.97481 -12.76750 -12.64339 -12.47508 -12.41663 -11.99736 -11.81948 -11.71156 -11.60487 -11.55702 -11.39301 -11.22407 -10.86768 -10.72264 -10.44150 -10.11421 -8.86262 -7.75863 -5.20184 1.35509 1.46754 1.49710 1.55998 1.56532 1.81298 2.09631 2.50271 3.03706 3.33168 3.54613 3.64614 3.71095 3.81963 3.91218 3.95118 3.99259 4.08120 4.26285 4.39427 4.46900 4.51132 4.63385 4.73466 4.76498 4.79037 4.84592 4.87110 4.99483 5.01430 5.11228 5.17593 5.23951 5.35861 5.40637 5.43355 5.51979 5.73638 5.86219 5.99498 6.33497 6.54938 6.59377 7.12557 7.21566 7.80794 8.44276 9.25430 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021161 B = 0.002904 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.846681 B = 9639.678584 C =10467.818744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.388 6.388 5 C 0.073 3.927 6 H 0.123 0.877 7 C -0.165 4.165 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.145 3.855 12 C -0.088 4.088 13 H 0.100 0.900 14 C 0.137 3.863 15 N -0.630 5.630 16 C -0.239 4.239 17 H 0.080 0.920 18 C -0.068 4.068 19 N -0.948 5.948 20 Si 0.979 3.021 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.279 1.279 24 C 0.162 3.838 25 C -0.103 4.103 26 H 0.062 0.938 27 C -0.127 4.127 28 H 0.252 0.748 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.416 0.584 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.034 0.966 39 H 0.246 0.754 40 H 0.067 0.933 41 H -0.008 1.008 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.539 4.015 16.936 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.307 6.307 5 C 0.012 3.988 6 H 0.141 0.859 7 C -0.223 4.223 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.021 3.979 12 C -0.107 4.107 13 H 0.118 0.882 14 C 0.012 3.988 15 N -0.355 5.355 16 C -0.368 4.368 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.807 3.193 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.205 1.205 24 C 0.037 3.963 25 C -0.123 4.123 26 H 0.081 0.919 27 C -0.185 4.185 28 H 0.268 0.732 29 H 0.122 0.878 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.254 0.746 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.010 0.990 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.088 3.468 16.296 22.477 hybrid contribution 1.004 0.852 -0.739 1.510 sum -14.084 4.320 15.557 21.425 Atomic orbital electron populations 1.25866 0.96940 0.96351 0.99213 1.23183 0.95138 1.03409 1.02118 1.19470 0.84521 0.85725 1.01452 1.88068 1.20342 1.34852 1.87458 1.22079 0.82288 0.99861 0.94548 0.85906 1.22256 1.02951 1.02566 0.94526 1.21034 0.82368 0.82837 0.84326 1.90706 1.51684 1.49895 1.53381 1.45839 1.06987 1.46229 1.37200 1.21183 0.93266 0.93651 0.89821 1.22327 0.93470 0.95184 0.99692 0.88228 1.21525 0.89745 0.95595 0.91922 1.44809 1.38540 1.03267 1.48933 1.19409 1.10982 0.89005 1.17376 0.90174 1.25629 1.00642 0.98190 1.01632 1.70051 1.33815 1.14192 1.41761 0.85146 0.77966 0.77881 0.78295 1.20232 1.22066 1.20539 1.21789 0.91835 0.82486 1.00156 1.22478 0.97571 0.95278 0.96950 0.91905 1.21598 1.02063 0.94268 1.00542 0.73193 0.87785 0.89207 0.88849 0.88596 0.92705 0.74631 0.90831 0.93323 0.96280 0.94837 0.94392 0.91513 0.99006 0.90894 0.92846 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 19.25 74.32 1.43 -1.35 16 2 C -0.24 -4.80 13.73 31.12 0.43 -4.37 16 3 C 0.16 2.67 6.22 70.18 0.44 3.11 16 4 O -0.39 -9.20 9.48 -129.99 -1.23 -10.43 16 5 C 0.07 1.30 3.13 29.85 0.09 1.39 16 6 H 0.12 1.36 7.79 -2.39 -0.02 1.34 16 7 C -0.17 -1.97 9.48 71.98 0.68 -1.29 16 8 C 0.51 13.30 7.18 87.66 0.63 13.93 16 9 O -0.58 -21.51 16.51 15.95 0.26 -21.25 16 10 N -0.71 -15.90 5.39 -463.06 -2.50 -18.40 16 11 C 0.14 3.99 5.00 86.38 0.43 4.42 16 12 C -0.09 -2.66 2.45 -9.60 -0.02 -2.68 16 13 H 0.10 2.64 8.04 -2.39 -0.02 2.62 16 14 C 0.14 5.26 6.64 86.73 0.58 5.83 16 15 N -0.63 -31.85 3.40 -691.56 -2.35 -34.20 16 16 C -0.24 -13.27 10.27 84.03 0.86 -12.41 16 17 H 0.08 4.25 7.83 -2.92 -0.02 4.23 16 18 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 19 N -0.95 -56.43 10.09 21.65 0.22 -56.22 16 20 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 C 0.16 7.84 5.37 86.93 0.47 8.30 16 25 C -0.10 -3.66 3.10 -9.32 -0.03 -3.69 16 26 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 27 C -0.13 -3.63 9.31 71.98 0.67 -2.96 16 28 H 0.25 2.01 7.80 -4.43 -0.03 1.97 16 29 H 0.10 1.03 7.87 -2.39 -0.02 1.01 16 30 H 0.09 1.16 8.09 -2.39 -0.02 1.14 16 31 H 0.09 0.71 7.87 -2.39 -0.02 0.69 16 32 H 0.10 0.76 7.92 -2.39 -0.02 0.74 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.42 6.75 8.18 -92.70 -0.76 5.99 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.57 8.00 -2.39 -0.02 1.55 16 37 H 0.02 0.76 7.73 -2.38 -0.02 0.74 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 39 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.07 3.76 5.87 -2.39 -0.01 3.75 16 41 H -0.01 -0.41 7.99 -2.39 -0.02 -0.43 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 Total: -1.00 -78.53 368.48 3.77 -74.76 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.21 Total: 13.40 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 7.12 Total: 4.84 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -4.63 Total: -108.81 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.97 Total: -31.68 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.53 3.77 -74.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101958627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.918 kcal (2) G-P(sol) polarization free energy of solvation -78.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds