Wall clock time and date at job start Tue Mar 31 2020 07:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47044 * 327.60747 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46882 * 30.00382 * 5 4 3 7 7 C 1.52998 * 109.47307 * 269.99994 * 5 4 3 8 8 C 1.50701 * 109.46777 * 150.00026 * 5 4 3 9 9 O 1.21281 * 120.00439 * 5.00672 * 8 5 4 10 10 N 1.34775 * 119.99947 * 184.99711 * 8 5 4 11 11 C 1.46493 * 120.00347 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47795 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.64010 * 54.29616 * 12 11 10 14 14 C 1.54333 * 110.71855 * 291.16315 * 12 11 10 15 15 N 1.47022 * 107.26643 * 219.43860 * 14 12 11 16 16 C 1.36937 * 125.64208 * 178.96974 * 15 14 12 17 17 H 1.07993 * 120.00608 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99918 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99912 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47184 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47142 * 119.99902 * 20 18 16 23 23 H 1.48502 * 109.47027 * 239.99991 * 20 18 16 24 24 C 1.47419 * 108.70548 * 358.94028 * 15 14 12 25 25 C 1.55124 * 104.94734 * 24.00358 * 24 15 14 26 26 H 1.08997 * 110.93566 * 81.21042 * 25 24 15 27 27 C 1.52997 * 111.16340 * 205.13532 * 25 24 15 28 28 H 4.38443 * 5.44458 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47005 * 207.60807 * 3 2 1 30 30 H 1.08997 * 109.46973 * 87.61000 * 3 2 1 31 31 H 1.09004 * 109.47223 * 300.00490 * 7 5 4 32 32 H 1.08997 * 109.46785 * 60.00007 * 7 5 4 33 33 H 1.09002 * 109.47171 * 179.97438 * 7 5 4 34 34 H 0.97004 * 120.00156 * 0.02562 * 10 8 5 35 35 H 1.09009 * 109.47306 * 300.00494 * 11 10 8 36 36 H 1.09002 * 109.46896 * 60.00194 * 11 10 8 37 37 H 1.09001 * 109.87573 * 338.85108 * 14 12 11 38 38 H 1.08991 * 109.88548 * 100.01661 * 14 12 11 39 39 H 0.97000 * 119.99960 * 179.97438 * 19 18 16 40 40 H 1.09006 * 110.36975 * 142.96498 * 24 15 14 41 41 H 1.09000 * 110.36492 * 265.28560 * 24 15 14 42 42 H 1.08996 * 109.46914 * 172.16652 * 27 25 24 43 43 H 1.09002 * 109.46937 * 292.16685 * 27 25 24 44 44 H 1.09000 * 109.47075 * 52.16400 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1368 0.7218 5 6 4.5474 -1.2317 0.7817 6 1 4.9796 -0.2314 0.7554 7 6 5.0557 -2.0385 -0.4148 8 6 4.9516 -1.9201 2.0599 9 8 4.1035 -2.3735 2.7989 10 7 6.2556 -2.0321 2.3818 11 6 6.6486 -2.7018 3.6240 12 6 8.1735 -2.6921 3.7484 13 1 8.5595 -1.6764 3.6631 14 6 8.8138 -3.6104 2.6861 15 7 9.9381 -4.3051 3.3302 16 6 10.7549 -5.2269 2.7317 17 1 10.5974 -5.4978 1.6983 18 6 11.7857 -5.8131 3.4535 19 7 11.9774 -5.4833 4.7132 20 14 12.9005 -7.0700 2.6369 21 1 12.4775 -7.2647 1.2268 22 1 14.3031 -6.5837 2.6709 23 1 12.8066 -8.3614 3.3641 24 6 10.0407 -3.8444 4.7268 25 6 8.6193 -3.3382 5.0867 26 1 7.9667 -4.1687 5.3560 27 6 8.6706 -2.2981 6.2075 28 1 -1.0498 -0.0004 0.0000 29 1 3.0089 0.9115 0.4762 30 1 3.0093 -0.0420 -1.0267 31 1 4.6234 -3.0388 -0.3885 32 1 4.7633 -1.5406 -1.3393 33 1 6.1423 -2.1105 -0.3693 34 1 6.9339 -1.6693 1.7908 35 1 6.2117 -2.1769 4.4737 36 1 6.2913 -3.7315 3.6103 37 1 8.0814 -4.3372 2.3345 38 1 9.1771 -3.0130 1.8500 39 1 12.6974 -5.8933 5.2177 40 1 10.3267 -4.6700 5.3786 41 1 10.7615 -3.0305 4.8058 42 1 7.6814 -1.8608 6.3430 43 1 8.9859 -2.7778 7.1342 44 1 9.3812 -1.5147 5.9439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101958628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:48 Heat of formation + Delta-G solvation = -6.180036 kcal Electronic energy + Delta-G solvation = -23453.295969 eV Core-core repulsion = 19987.134632 eV Total energy + Delta-G solvation = -3466.161337 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09067 -38.41006 -37.65426 -34.67991 -33.77321 -33.00422 -31.61327 -30.76650 -29.09662 -27.43267 -26.08775 -25.31054 -24.10963 -22.61941 -20.65053 -19.85987 -19.37461 -18.87424 -17.42451 -17.19262 -16.75288 -16.09690 -15.51813 -15.32621 -15.02587 -14.68364 -14.28987 -13.78418 -13.61773 -13.43089 -13.14031 -12.91391 -12.65338 -12.53747 -12.49463 -11.92642 -11.70955 -11.57107 -11.42887 -11.15840 -10.98834 -10.88888 -10.86470 -10.82654 -10.24649 -10.09982 -10.01094 -9.92687 -9.83707 -9.60769 -9.34235 -8.97400 -8.67259 -6.85099 -5.67194 -3.09043 2.08037 2.48689 2.60015 3.01875 3.38254 3.43757 3.46238 3.72866 4.22488 4.46229 4.50353 4.63766 4.72986 4.82036 5.02194 5.09884 5.23223 5.28795 5.32181 5.40089 5.48160 5.56848 5.57677 5.75187 5.84597 5.86692 6.05522 6.10912 6.19095 6.25248 6.42186 6.51488 6.58162 6.59666 6.68930 6.78824 6.93336 7.24857 7.51164 7.52139 7.61717 7.85028 8.22801 8.34849 9.20386 9.81229 10.45952 11.36554 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.002848 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.725080 B = 9830.685475 C =10681.365977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.192 4.192 3 C 0.170 3.830 4 O -0.351 6.351 5 C 0.072 3.928 6 H 0.089 0.911 7 C -0.173 4.173 8 C 0.511 3.489 9 O -0.522 6.522 10 N -0.722 5.722 11 C 0.134 3.866 12 C -0.110 4.110 13 H 0.077 0.923 14 C 0.141 3.859 15 N -0.605 5.605 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.159 3.841 25 C -0.112 4.112 26 H 0.071 0.929 27 C -0.134 4.134 28 H 0.222 0.778 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.106 0.894 41 H 0.013 0.987 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.641 13.083 -7.767 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.192 4.192 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.010 3.990 6 H 0.107 0.893 7 C -0.230 4.230 8 C 0.296 3.704 9 O -0.397 6.397 10 N -0.375 5.375 11 C 0.011 3.989 12 C -0.129 4.129 13 H 0.095 0.905 14 C 0.015 3.985 15 N -0.331 5.331 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.570 5.570 20 Si 0.745 3.255 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.034 3.966 25 C -0.132 4.132 26 H 0.090 0.910 27 C -0.192 4.192 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.124 0.876 41 H 0.031 0.969 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.193 12.466 -7.100 20.896 hybrid contribution 0.948 -0.212 -0.890 1.317 sum -14.245 12.254 -7.990 20.419 Atomic orbital electron populations 1.24970 0.95897 0.98294 0.99786 1.22437 0.93820 1.01834 1.01143 1.19180 0.85066 0.89490 0.96864 1.88132 1.19102 1.44772 1.74965 1.21943 0.82735 1.00072 0.94230 0.89289 1.22260 1.02182 1.01795 0.96789 1.20255 0.82857 0.80443 0.86883 1.90732 1.50240 1.47177 1.51537 1.45998 1.06679 1.59846 1.24976 1.21472 0.94796 0.97590 0.85090 1.22499 0.92276 0.99888 0.98228 0.90511 1.21338 0.90530 0.93066 0.93556 1.44491 1.32943 1.46787 1.08847 1.19114 1.06843 1.13824 0.95248 0.90482 1.24798 0.99161 1.00502 0.96286 1.69804 1.33315 1.46054 1.07834 0.86002 0.80347 0.80899 0.78273 1.20552 1.21770 1.21722 1.22024 0.88816 0.98755 0.86969 1.22638 1.01185 0.97134 0.92219 0.91016 1.21646 1.00409 0.98616 0.98528 0.76116 0.90631 0.90561 0.90816 0.91175 0.90363 0.76490 0.91561 0.91189 0.95766 0.96428 0.93764 0.87586 0.96932 0.93642 0.92646 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 19.25 29.55 0.57 -0.95 16 2 C -0.19 -1.99 13.73 -37.12 -0.51 -2.50 16 3 C 0.17 1.49 6.22 34.37 0.21 1.71 16 4 O -0.35 -4.36 9.48 -55.09 -0.52 -4.88 16 5 C 0.07 0.72 3.13 -27.88 -0.09 0.63 16 6 H 0.09 0.60 7.79 -51.93 -0.40 0.20 16 7 C -0.17 -1.43 9.48 37.16 0.35 -1.08 16 8 C 0.51 7.05 7.18 -10.99 -0.08 6.97 16 9 O -0.52 -9.71 16.51 -14.30 -0.24 -9.95 16 10 N -0.72 -8.90 5.39 -60.30 -0.33 -9.23 16 11 C 0.13 1.95 5.00 -4.05 -0.02 1.93 16 12 C -0.11 -1.76 2.45 -88.78 -0.22 -1.98 16 13 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 14 C 0.14 2.78 6.64 -3.06 -0.02 2.76 16 15 N -0.61 -15.15 3.40 -169.94 -0.58 -15.73 16 16 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 20 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.16 3.75 5.37 -2.42 -0.01 3.74 16 25 C -0.11 -2.02 3.10 -88.36 -0.27 -2.29 16 26 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 27 C -0.13 -2.03 9.31 37.16 0.35 -1.68 16 28 H 0.22 1.08 7.80 -54.10 -0.42 0.66 16 29 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.08 0.48 7.87 -51.93 -0.41 0.07 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 34 H 0.40 3.92 8.19 -40.82 -0.33 3.59 16 35 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 36 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 37 H 0.02 0.49 7.73 -51.93 -0.40 0.09 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 41 H 0.01 0.32 7.99 -51.93 -0.41 -0.10 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -34.57 368.48 -7.82 -42.39 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.26 Total: 0.43 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 0.01 Total: 0.56 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.34 Total: -50.99 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.76 Total: -14.83 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.57 -7.82 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101958628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.213 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds