Wall clock time and date at job start Tue Mar 31 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47044 * 327.60747 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46882 * 30.00382 * 5 4 3 7 7 C 1.52998 * 109.47307 * 269.99994 * 5 4 3 8 8 C 1.50701 * 109.46777 * 150.00026 * 5 4 3 9 9 O 1.21281 * 120.00439 * 5.00672 * 8 5 4 10 10 N 1.34775 * 119.99947 * 184.99711 * 8 5 4 11 11 C 1.46493 * 120.00347 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47795 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.64010 * 54.29616 * 12 11 10 14 14 C 1.54333 * 110.71855 * 291.16315 * 12 11 10 15 15 N 1.47022 * 107.26643 * 219.43860 * 14 12 11 16 16 C 1.36937 * 125.64208 * 178.96974 * 15 14 12 17 17 H 1.07993 * 120.00608 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99655 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99918 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99912 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47184 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47142 * 119.99902 * 20 18 16 23 23 H 1.48502 * 109.47027 * 239.99991 * 20 18 16 24 24 C 1.47419 * 108.70548 * 358.94028 * 15 14 12 25 25 C 1.55124 * 104.94734 * 24.00358 * 24 15 14 26 26 H 1.08997 * 110.93566 * 81.21042 * 25 24 15 27 27 C 1.52997 * 111.16340 * 205.13532 * 25 24 15 28 28 H 4.38443 * 5.44458 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47005 * 207.60807 * 3 2 1 30 30 H 1.08997 * 109.46973 * 87.61000 * 3 2 1 31 31 H 1.09004 * 109.47223 * 300.00490 * 7 5 4 32 32 H 1.08997 * 109.46785 * 60.00007 * 7 5 4 33 33 H 1.09002 * 109.47171 * 179.97438 * 7 5 4 34 34 H 0.97004 * 120.00156 * 0.02562 * 10 8 5 35 35 H 1.09009 * 109.47306 * 300.00494 * 11 10 8 36 36 H 1.09002 * 109.46896 * 60.00194 * 11 10 8 37 37 H 1.09001 * 109.87573 * 338.85108 * 14 12 11 38 38 H 1.08991 * 109.88548 * 100.01661 * 14 12 11 39 39 H 0.97000 * 119.99960 * 179.97438 * 19 18 16 40 40 H 1.09006 * 110.36975 * 142.96498 * 24 15 14 41 41 H 1.09000 * 110.36492 * 265.28560 * 24 15 14 42 42 H 1.08996 * 109.46914 * 172.16652 * 27 25 24 43 43 H 1.09002 * 109.46937 * 292.16685 * 27 25 24 44 44 H 1.09000 * 109.47075 * 52.16400 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1368 0.7218 5 6 4.5474 -1.2317 0.7817 6 1 4.9796 -0.2314 0.7554 7 6 5.0557 -2.0385 -0.4148 8 6 4.9516 -1.9201 2.0599 9 8 4.1035 -2.3735 2.7989 10 7 6.2556 -2.0321 2.3818 11 6 6.6486 -2.7018 3.6240 12 6 8.1735 -2.6921 3.7484 13 1 8.5595 -1.6764 3.6631 14 6 8.8138 -3.6104 2.6861 15 7 9.9381 -4.3051 3.3302 16 6 10.7549 -5.2269 2.7317 17 1 10.5974 -5.4978 1.6983 18 6 11.7857 -5.8131 3.4535 19 7 11.9774 -5.4833 4.7132 20 14 12.9005 -7.0700 2.6369 21 1 12.4775 -7.2647 1.2268 22 1 14.3031 -6.5837 2.6709 23 1 12.8066 -8.3614 3.3641 24 6 10.0407 -3.8444 4.7268 25 6 8.6193 -3.3382 5.0867 26 1 7.9667 -4.1687 5.3560 27 6 8.6706 -2.2981 6.2075 28 1 -1.0498 -0.0004 0.0000 29 1 3.0089 0.9115 0.4762 30 1 3.0093 -0.0420 -1.0267 31 1 4.6234 -3.0388 -0.3885 32 1 4.7633 -1.5406 -1.3393 33 1 6.1423 -2.1105 -0.3693 34 1 6.9339 -1.6693 1.7908 35 1 6.2117 -2.1769 4.4737 36 1 6.2913 -3.7315 3.6103 37 1 8.0814 -4.3372 2.3345 38 1 9.1771 -3.0130 1.8500 39 1 12.6974 -5.8933 5.2177 40 1 10.3267 -4.6700 5.3786 41 1 10.7615 -3.0305 4.8058 42 1 7.6814 -1.8608 6.3430 43 1 8.9859 -2.7778 7.1342 44 1 9.3812 -1.5147 5.9439 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101958628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:47 Heat of formation + Delta-G solvation = -29.007010 kcal Electronic energy + Delta-G solvation = -23454.285821 eV Core-core repulsion = 19987.134632 eV Total energy + Delta-G solvation = -3467.151188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13401 -39.72226 -38.75152 -36.07075 -34.76522 -34.37119 -32.56348 -32.45743 -30.46758 -28.06606 -27.86542 -26.74260 -25.24897 -24.05708 -21.84768 -21.42866 -20.70592 -19.63239 -18.86457 -18.27917 -17.95403 -17.14332 -16.80779 -16.40670 -16.23315 -15.96350 -15.55596 -15.44517 -14.76210 -14.56400 -14.40200 -14.06323 -13.87612 -13.53168 -13.50082 -13.38123 -13.17417 -12.98294 -12.76420 -12.67292 -12.47534 -12.42152 -11.93324 -11.82651 -11.70984 -11.59330 -11.55983 -11.39300 -11.22259 -10.86081 -10.74034 -10.44029 -10.11233 -8.86219 -7.76321 -5.20419 1.35916 1.46733 1.47692 1.56381 1.57716 1.82013 2.10276 2.49844 3.04544 3.33086 3.54648 3.64947 3.71091 3.82780 3.91283 3.95018 3.98432 4.07061 4.27116 4.39544 4.48219 4.51228 4.63537 4.71177 4.76541 4.78171 4.84028 4.87047 4.99818 5.01975 5.11297 5.17763 5.22943 5.35958 5.40757 5.43635 5.52395 5.73639 5.86219 6.00499 6.33422 6.55216 6.60054 7.12564 7.21800 7.80610 8.43997 9.25362 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025157 B = 0.002848 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.725080 B = 9830.685475 C =10681.365977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.389 6.389 5 C 0.076 3.924 6 H 0.131 0.869 7 C -0.169 4.169 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.709 5.709 11 C 0.145 3.855 12 C -0.088 4.088 13 H 0.100 0.900 14 C 0.137 3.863 15 N -0.630 5.630 16 C -0.235 4.235 17 H 0.081 0.919 18 C -0.070 4.070 19 N -0.949 5.949 20 Si 0.978 3.022 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.294 1.294 24 C 0.162 3.838 25 C -0.103 4.103 26 H 0.062 0.938 27 C -0.127 4.127 28 H 0.251 0.749 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.019 0.981 38 H 0.034 0.966 39 H 0.246 0.754 40 H 0.067 0.933 41 H -0.008 1.008 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.358 14.931 -9.402 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.308 6.308 5 C 0.015 3.985 6 H 0.148 0.852 7 C -0.226 4.226 8 C 0.294 3.706 9 O -0.457 6.457 10 N -0.363 5.363 11 C 0.021 3.979 12 C -0.107 4.107 13 H 0.118 0.882 14 C 0.012 3.988 15 N -0.355 5.355 16 C -0.364 4.364 17 H 0.099 0.901 18 C -0.262 4.262 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.221 1.221 24 C 0.037 3.963 25 C -0.123 4.123 26 H 0.081 0.919 27 C -0.185 4.185 28 H 0.267 0.733 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.254 0.746 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.010 0.990 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.907 14.348 -8.780 23.152 hybrid contribution 1.112 -0.785 -0.406 1.420 sum -14.795 13.564 -9.186 22.074 Atomic orbital electron populations 1.25864 0.96958 0.97010 0.98663 1.23201 0.95170 1.03093 1.02334 1.19488 0.84449 0.89089 0.98141 1.88080 1.20316 1.46517 1.75882 1.22048 0.82300 1.01857 0.92279 0.85172 1.22272 1.02824 1.00426 0.97116 1.21040 0.82372 0.79565 0.87612 1.90706 1.51708 1.49654 1.53593 1.45838 1.06973 1.59065 1.24383 1.21183 0.93308 0.96868 0.86569 1.22330 0.93021 0.99889 0.95448 0.88222 1.21525 0.89035 0.93373 0.94840 1.44820 1.33856 1.47000 1.09864 1.19482 1.07169 1.14196 0.95577 0.90137 1.25632 1.00921 1.02684 0.96980 1.70068 1.33652 1.47133 1.09019 0.85003 0.78191 0.78175 0.77934 1.19069 1.21877 1.22099 1.21791 0.91711 0.96689 0.86112 1.22476 0.97304 0.97969 0.94529 0.91917 1.21596 1.02179 0.97682 0.97007 0.73259 0.88717 0.87993 0.93290 0.88656 0.88929 0.74631 0.90781 0.93373 0.96270 0.94794 0.94423 0.91512 0.98998 0.90875 0.92857 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 19.25 74.32 1.43 -1.30 16 2 C -0.24 -4.65 13.73 31.13 0.43 -4.22 16 3 C 0.16 2.53 6.22 70.18 0.44 2.97 16 4 O -0.39 -9.10 9.48 -129.99 -1.23 -10.33 16 5 C 0.08 1.34 3.13 29.85 0.09 1.43 16 6 H 0.13 1.20 7.79 -2.39 -0.02 1.18 16 7 C -0.17 -2.36 9.48 71.98 0.68 -1.68 16 8 C 0.51 13.24 7.18 87.66 0.63 13.87 16 9 O -0.58 -21.46 16.51 15.95 0.26 -21.20 16 10 N -0.71 -15.84 5.39 -463.07 -2.50 -18.34 16 11 C 0.14 3.98 5.00 86.38 0.43 4.41 16 12 C -0.09 -2.66 2.45 -9.60 -0.02 -2.68 16 13 H 0.10 2.63 8.04 -2.39 -0.02 2.61 16 14 C 0.14 5.25 6.64 86.73 0.58 5.83 16 15 N -0.63 -31.80 3.40 -691.56 -2.35 -34.15 16 16 C -0.24 -13.06 10.27 84.04 0.86 -12.20 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 19 N -0.95 -56.51 10.09 21.65 0.22 -56.29 16 20 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 C 0.16 7.81 5.37 86.93 0.47 8.28 16 25 C -0.10 -3.65 3.10 -9.33 -0.03 -3.68 16 26 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 27 C -0.13 -3.61 9.31 71.98 0.67 -2.94 16 28 H 0.25 1.93 7.80 -4.43 -0.03 1.90 16 29 H 0.10 1.03 8.09 -2.39 -0.02 1.01 16 30 H 0.10 0.97 7.87 -2.39 -0.02 0.96 16 31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 0.86 7.87 -2.39 -0.02 0.84 16 33 H 0.09 1.01 7.93 -2.39 -0.02 0.99 16 34 H 0.42 6.72 8.19 -92.71 -0.76 5.96 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.05 1.56 8.01 -2.39 -0.02 1.54 16 37 H 0.02 0.76 7.73 -2.39 -0.02 0.74 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.25 14.23 8.31 -92.71 -0.77 13.45 16 40 H 0.07 3.76 5.87 -2.38 -0.01 3.75 16 41 H -0.01 -0.41 7.99 -2.39 -0.02 -0.43 16 42 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 Total: -1.00 -78.78 368.48 3.77 -75.01 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.21 Total: 13.09 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 7.12 Total: 4.60 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -4.63 Total: -108.78 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.97 Total: -31.53 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.78 3.77 -75.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101958628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.007 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds