Wall clock time and date at job start Tue Mar 31 2020 07:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47213 * 286.51166 * 3 2 1 5 5 C 1.42896 * 113.99967 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47260 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47592 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99684 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00461 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.88732 * 51.11827 * 11 10 9 13 13 C 1.54903 * 111.00296 * 287.19453 * 11 10 9 14 14 N 1.47427 * 104.83301 * 204.92057 * 13 11 10 15 15 C 1.36938 * 125.64890 * 204.08724 * 14 13 11 16 16 H 1.08002 * 120.00002 * 0.02573 * 15 14 13 17 17 C 1.38815 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99847 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00026 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47482 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47299 * 119.99809 * 19 17 15 22 22 H 1.48501 * 109.47171 * 240.00019 * 19 17 15 23 23 C 1.47023 * 108.70368 * 24.12760 * 14 13 11 24 24 C 1.54325 * 107.26905 * 358.93967 * 23 14 13 25 25 H 1.09006 * 110.71418 * 96.17358 * 24 23 14 26 26 C 1.52999 * 110.87691 * 219.37236 * 24 23 14 27 27 H 4.38444 * 5.44479 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.46782 * 166.50493 * 3 2 1 29 29 H 1.08998 * 109.46923 * 46.51117 * 3 2 1 30 30 H 1.09004 * 109.47251 * 59.99606 * 5 4 3 31 31 H 1.09000 * 109.47075 * 299.99499 * 5 4 3 32 32 H 1.08996 * 109.47261 * 59.99484 * 6 5 4 33 33 H 1.09004 * 109.47368 * 299.99868 * 6 5 4 34 34 H 0.97010 * 119.99854 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47452 * 60.00368 * 10 9 7 36 36 H 1.09000 * 109.47175 * 300.00158 * 10 9 7 37 37 H 1.09000 * 110.37223 * 323.75436 * 13 11 10 38 38 H 1.08997 * 110.36517 * 86.08099 * 13 11 10 39 39 H 0.97004 * 119.99814 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.88477 * 239.52935 * 23 14 13 41 41 H 1.08994 * 109.88081 * 118.36128 * 23 14 13 42 42 H 1.08991 * 109.47231 * 173.61686 * 26 24 23 43 43 H 1.09006 * 109.46707 * 293.61651 * 26 24 23 44 44 H 1.09000 * 109.47026 * 53.60976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3820 1.2917 5 6 4.5470 -0.4129 1.4000 6 6 4.9418 -0.8323 2.8174 7 6 6.4441 -0.8655 2.9316 8 8 7.1314 -0.5820 1.9733 9 7 7.0239 -1.2100 4.0983 10 6 8.4843 -1.2417 4.2094 11 6 8.8790 -1.6613 5.6269 12 1 8.3623 -2.5752 5.9197 13 6 8.6081 -0.5205 6.6392 14 7 9.5401 -0.7749 7.7528 15 6 9.3765 -0.3485 9.0438 16 1 8.5039 0.2268 9.3159 17 6 10.3321 -0.6557 10.0026 18 7 11.3952 -1.3573 9.6710 19 14 10.1092 -0.0734 11.7634 20 1 8.8405 0.6902 11.8756 21 1 10.0612 -1.2480 12.6710 22 1 11.2484 0.7999 12.1439 23 6 10.6748 -1.5615 7.2476 24 6 10.4167 -1.8281 5.7496 25 1 10.9348 -1.0939 5.1325 26 6 10.8393 -3.2481 5.3678 27 1 -1.0499 0.0001 0.0002 28 1 3.0088 1.0001 -0.2398 29 1 3.0096 -0.7064 -0.7456 30 1 4.9490 0.5782 1.1895 31 1 4.9505 -1.1284 0.6835 32 1 4.5398 -1.8232 3.0284 33 1 4.5384 -0.1165 3.5338 34 1 6.4741 -1.4371 4.8647 35 1 8.8864 -0.2509 3.9982 36 1 8.8877 -1.9577 3.4933 37 1 8.8162 0.4479 6.1843 38 1 7.5771 -0.5619 6.9904 39 1 12.0628 -1.5723 10.3412 40 1 10.7399 -2.5068 7.7864 41 1 11.5999 -0.9983 7.3699 42 1 10.5444 -3.4505 4.3382 43 1 11.9213 -3.3425 5.4611 44 1 10.3536 -3.9628 6.0321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101960735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:42 Heat of formation + Delta-G solvation = -13.788525 kcal Electronic energy + Delta-G solvation = -22828.517911 eV Core-core repulsion = 19362.026646 eV Total energy + Delta-G solvation = -3466.491265 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.90050 -38.43329 -37.92898 -34.71645 -33.81738 -32.97521 -31.80727 -30.74375 -29.26888 -27.33679 -26.01674 -25.22715 -23.78621 -22.51213 -20.58800 -20.01179 -19.24075 -18.77872 -17.57860 -16.80271 -16.74435 -16.20785 -16.04386 -15.48715 -15.18963 -14.79918 -14.33731 -13.95490 -13.70587 -13.44778 -13.10459 -13.01269 -12.84344 -12.52676 -12.03880 -11.79326 -11.76772 -11.66599 -11.40886 -11.22740 -10.91634 -10.82718 -10.80617 -10.79343 -10.22518 -10.05245 -9.99007 -9.92076 -9.91232 -9.70468 -9.55625 -8.99822 -8.61857 -6.84273 -5.72557 -3.06079 2.08798 2.42314 2.58033 3.05407 3.38561 3.44105 3.46539 3.67392 4.20000 4.47865 4.54944 4.75628 4.85534 4.95786 5.00670 5.10280 5.18875 5.25718 5.32782 5.48280 5.51231 5.54230 5.54822 5.55890 5.74553 5.85236 6.01007 6.08778 6.17077 6.26987 6.41880 6.47182 6.55821 6.61196 6.74118 6.74800 6.92922 7.17838 7.48549 7.55953 7.63252 7.82793 8.16919 8.24781 9.20912 9.81236 10.47263 11.39058 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.002437 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.402049 B =11485.329238 C =12527.769116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.192 4.192 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.141 4.141 7 C 0.516 3.484 8 O -0.549 6.549 9 N -0.722 5.722 10 C 0.132 3.868 11 C -0.113 4.113 12 H 0.080 0.920 13 C 0.142 3.858 14 N -0.607 5.607 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.184 3.816 24 C -0.111 4.111 25 H 0.067 0.933 26 C -0.134 4.134 27 H 0.222 0.778 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.404 0.596 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.036 0.964 39 H 0.251 0.749 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.434 -0.951 -17.357 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.306 6.306 5 C 0.002 3.998 6 C -0.181 4.181 7 C 0.302 3.698 8 O -0.427 6.427 9 N -0.373 5.373 10 C 0.009 3.991 11 C -0.133 4.133 12 H 0.099 0.901 13 C 0.015 3.985 14 N -0.333 5.333 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.059 3.941 24 C -0.131 4.131 25 H 0.086 0.914 26 C -0.192 4.192 27 H 0.239 0.761 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.909 -0.801 -17.664 22.497 hybrid contribution -0.315 0.245 1.223 1.287 sum -14.224 -0.555 -16.441 21.747 Atomic orbital electron populations 1.24984 0.95909 1.00629 0.97818 1.22580 0.93934 1.00731 1.02011 1.19050 0.84594 1.00447 0.86096 1.87870 1.21840 1.89998 1.30923 1.22163 0.79599 1.01664 0.96387 1.21470 0.92843 1.05268 0.98534 1.20307 0.89857 0.76715 0.82909 1.90708 1.65428 1.48966 1.37600 1.46065 1.08594 1.69291 1.13341 1.21418 0.78698 1.01780 0.97243 1.22681 0.97722 1.00022 0.92856 0.90125 1.21587 0.93982 0.94253 0.88661 1.44477 1.21213 1.62854 1.04735 1.19098 1.05044 1.28099 0.83360 0.90434 1.24814 0.96981 1.00502 0.98281 1.69976 1.11356 1.43056 1.32486 0.86046 0.77285 0.77830 0.84600 1.20530 1.21777 1.21771 1.21219 0.90668 0.96147 0.86068 1.22444 0.93318 0.96678 1.00632 0.91446 1.21690 1.01182 0.96391 0.99906 0.76149 0.90598 0.90635 0.91944 0.92002 0.87935 0.87805 0.76201 0.91340 0.91605 0.96353 0.94593 0.93811 0.93299 0.94045 0.93670 0.92759 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 19.25 29.55 0.57 -0.78 16 2 C -0.19 -1.78 13.73 -37.12 -0.51 -2.28 16 3 C 0.17 1.42 6.41 34.37 0.22 1.64 16 4 O -0.39 -3.94 10.30 -35.23 -0.36 -4.30 16 5 C 0.08 0.74 5.23 37.16 0.19 0.94 16 6 C -0.14 -1.28 6.07 -27.88 -0.17 -1.45 16 7 C 0.52 6.29 7.83 -10.99 -0.09 6.21 16 8 O -0.55 -8.63 15.98 5.56 0.09 -8.54 16 9 N -0.72 -8.54 5.50 -60.29 -0.33 -8.87 16 10 C 0.13 1.84 5.13 -4.04 -0.02 1.82 16 11 C -0.11 -1.81 2.49 -88.47 -0.22 -2.03 16 12 H 0.08 1.27 8.05 -51.93 -0.42 0.86 16 13 C 0.14 2.78 6.65 -2.53 -0.02 2.76 16 14 N -0.61 -15.17 3.39 -170.07 -0.58 -15.75 16 15 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.87 10.31 55.49 0.57 -26.30 16 19 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.18 4.35 4.97 -3.06 -0.02 4.33 16 24 C -0.11 -1.97 3.01 -88.79 -0.27 -2.24 16 25 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 26 C -0.13 -2.05 9.17 37.16 0.34 -1.71 16 27 H 0.22 0.85 7.80 -54.09 -0.42 0.42 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 35 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16 36 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 40 H 0.05 1.28 7.02 -51.93 -0.36 0.92 16 41 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 42 H 0.04 0.59 8.08 -51.93 -0.42 0.17 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -33.29 370.26 -7.65 -40.94 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.36 Total: -0.12 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.23 Total: 0.40 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.34 Total: -50.92 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.27 Total: -12.84 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.29 -7.65 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101960735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.148 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds