Wall clock time and date at job start Tue Mar 31 2020 07:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47213 * 286.51166 * 3 2 1 5 5 C 1.42896 * 113.99967 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47260 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47592 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99684 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00461 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.88732 * 51.11827 * 11 10 9 13 13 C 1.54903 * 111.00296 * 287.19453 * 11 10 9 14 14 N 1.47427 * 104.83301 * 204.92057 * 13 11 10 15 15 C 1.36938 * 125.64890 * 204.08724 * 14 13 11 16 16 H 1.08002 * 120.00002 * 0.02573 * 15 14 13 17 17 C 1.38815 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99847 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 120.00026 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47482 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47299 * 119.99809 * 19 17 15 22 22 H 1.48501 * 109.47171 * 240.00019 * 19 17 15 23 23 C 1.47023 * 108.70368 * 24.12760 * 14 13 11 24 24 C 1.54325 * 107.26905 * 358.93967 * 23 14 13 25 25 H 1.09006 * 110.71418 * 96.17358 * 24 23 14 26 26 C 1.52999 * 110.87691 * 219.37236 * 24 23 14 27 27 H 4.38444 * 5.44479 * 179.97438 * 4 1 2 28 28 H 1.08999 * 109.46782 * 166.50493 * 3 2 1 29 29 H 1.08998 * 109.46923 * 46.51117 * 3 2 1 30 30 H 1.09004 * 109.47251 * 59.99606 * 5 4 3 31 31 H 1.09000 * 109.47075 * 299.99499 * 5 4 3 32 32 H 1.08996 * 109.47261 * 59.99484 * 6 5 4 33 33 H 1.09004 * 109.47368 * 299.99868 * 6 5 4 34 34 H 0.97010 * 119.99854 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.47452 * 60.00368 * 10 9 7 36 36 H 1.09000 * 109.47175 * 300.00158 * 10 9 7 37 37 H 1.09000 * 110.37223 * 323.75436 * 13 11 10 38 38 H 1.08997 * 110.36517 * 86.08099 * 13 11 10 39 39 H 0.97004 * 119.99814 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.88477 * 239.52935 * 23 14 13 41 41 H 1.08994 * 109.88081 * 118.36128 * 23 14 13 42 42 H 1.08991 * 109.47231 * 173.61686 * 26 24 23 43 43 H 1.09006 * 109.46707 * 293.61651 * 26 24 23 44 44 H 1.09000 * 109.47026 * 53.60976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3820 1.2917 5 6 4.5470 -0.4129 1.4000 6 6 4.9418 -0.8323 2.8174 7 6 6.4441 -0.8655 2.9316 8 8 7.1314 -0.5820 1.9733 9 7 7.0239 -1.2100 4.0983 10 6 8.4843 -1.2417 4.2094 11 6 8.8790 -1.6613 5.6269 12 1 8.3623 -2.5752 5.9197 13 6 8.6081 -0.5205 6.6392 14 7 9.5401 -0.7749 7.7528 15 6 9.3765 -0.3485 9.0438 16 1 8.5039 0.2268 9.3159 17 6 10.3321 -0.6557 10.0026 18 7 11.3952 -1.3573 9.6710 19 14 10.1092 -0.0734 11.7634 20 1 8.8405 0.6902 11.8756 21 1 10.0612 -1.2480 12.6710 22 1 11.2484 0.7999 12.1439 23 6 10.6748 -1.5615 7.2476 24 6 10.4167 -1.8281 5.7496 25 1 10.9348 -1.0939 5.1325 26 6 10.8393 -3.2481 5.3678 27 1 -1.0499 0.0001 0.0002 28 1 3.0088 1.0001 -0.2398 29 1 3.0096 -0.7064 -0.7456 30 1 4.9490 0.5782 1.1895 31 1 4.9505 -1.1284 0.6835 32 1 4.5398 -1.8232 3.0284 33 1 4.5384 -0.1165 3.5338 34 1 6.4741 -1.4371 4.8647 35 1 8.8864 -0.2509 3.9982 36 1 8.8877 -1.9577 3.4933 37 1 8.8162 0.4479 6.1843 38 1 7.5771 -0.5619 6.9904 39 1 12.0628 -1.5723 10.3412 40 1 10.7399 -2.5068 7.7864 41 1 11.5999 -0.9983 7.3699 42 1 10.5444 -3.4505 4.3382 43 1 11.9213 -3.3425 5.4611 44 1 10.3536 -3.9628 6.0321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101960735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:41 Heat of formation + Delta-G solvation = -35.984050 kcal Electronic energy + Delta-G solvation = -22829.480382 eV Core-core repulsion = 19362.026646 eV Total energy + Delta-G solvation = -3467.453736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.92493 -39.63994 -38.96454 -36.04383 -34.66569 -34.42751 -32.63375 -32.52351 -30.63661 -28.10106 -27.73502 -26.63959 -24.97200 -23.83523 -21.71417 -21.56382 -20.62029 -19.40762 -18.86111 -18.29988 -17.48671 -17.33997 -16.94704 -16.62213 -16.37579 -15.92467 -15.68347 -15.56382 -14.98060 -14.58257 -14.34556 -14.25199 -14.08455 -13.59785 -13.41310 -13.26341 -13.09952 -12.86008 -12.71197 -12.60423 -12.46761 -12.38534 -11.90004 -11.83663 -11.55463 -11.53835 -11.44165 -11.41062 -11.35404 -10.87237 -10.70547 -10.56111 -10.04851 -8.88396 -7.84228 -5.19586 1.45274 1.46036 1.46736 1.57019 1.63764 1.82745 2.17633 2.49617 3.00223 3.33830 3.60758 3.62752 3.73556 3.82972 3.95722 3.97039 4.07894 4.23934 4.32528 4.40000 4.45671 4.51053 4.55706 4.62183 4.75680 4.82533 4.84848 4.85637 4.89506 4.98837 5.03824 5.10465 5.17675 5.35838 5.40882 5.48513 5.51633 5.72914 5.82913 6.08302 6.21301 6.56079 6.60207 7.11469 7.23794 7.79297 8.43661 9.26124 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.002437 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.402049 B =11485.329238 C =12527.769116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.239 4.239 3 C 0.167 3.833 4 O -0.401 6.401 5 C 0.080 3.920 6 C -0.133 4.133 7 C 0.518 3.482 8 O -0.586 6.586 9 N -0.716 5.716 10 C 0.144 3.856 11 C -0.090 4.090 12 H 0.090 0.910 13 C 0.136 3.864 14 N -0.630 5.630 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.070 4.070 18 N -0.951 5.951 19 Si 0.978 3.022 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.295 1.295 23 C 0.192 3.808 24 C -0.102 4.102 25 H 0.073 0.927 26 C -0.127 4.127 27 H 0.253 0.747 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.415 0.585 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.017 0.983 38 H 0.050 0.950 39 H 0.245 0.755 40 H 0.016 0.984 41 H -0.002 1.002 42 H 0.076 0.924 43 H 0.052 0.948 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.682 -1.158 -18.315 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.239 4.239 3 C 0.092 3.908 4 O -0.321 6.321 5 C 0.003 3.997 6 C -0.172 4.172 7 C 0.306 3.694 8 O -0.466 6.466 9 N -0.368 5.368 10 C 0.020 3.980 11 C -0.110 4.110 12 H 0.109 0.891 13 C 0.012 3.988 14 N -0.356 5.356 15 C -0.368 4.368 16 H 0.101 0.899 17 C -0.263 4.263 18 N -0.601 5.601 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.222 1.222 23 C 0.067 3.933 24 C -0.122 4.122 25 H 0.092 0.908 26 C -0.185 4.185 27 H 0.269 0.731 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.252 0.748 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.016 0.984 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.206 -1.002 -18.633 24.715 hybrid contribution 0.322 0.356 1.488 1.563 sum -15.884 -0.646 -17.145 23.381 Atomic orbital electron populations 1.25862 0.96841 0.99118 0.96147 1.23112 0.94909 1.02253 1.03609 1.19236 0.84520 1.01450 0.85607 1.87829 1.21955 1.90196 1.32154 1.22122 0.79464 1.01406 0.96662 1.21433 0.90322 1.06808 0.98679 1.20767 0.90963 0.75537 0.82135 1.90699 1.66503 1.50597 1.38834 1.45961 1.07792 1.69089 1.13916 1.21142 0.80082 1.01310 0.95448 1.22472 0.96261 0.98938 0.93284 0.89136 1.21782 0.93587 0.95451 0.88030 1.44814 1.22654 1.62825 1.05293 1.19507 1.04966 1.27522 0.84803 0.89855 1.25669 0.97018 1.01293 1.02303 1.70204 1.12109 1.44481 1.33268 0.85014 0.77483 0.77146 0.79719 1.18862 1.21903 1.22233 1.20974 0.88986 0.93636 0.89726 1.22322 0.94951 0.98685 0.96260 0.90842 1.21636 1.01159 0.94152 1.01514 0.73089 0.89546 0.89361 0.92465 0.92112 0.85989 0.86420 0.74846 0.92469 0.90688 0.96523 0.93193 0.94517 0.96578 0.98372 0.90519 0.92844 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 19.25 74.32 1.43 -0.76 16 2 C -0.24 -4.14 13.73 31.13 0.43 -3.71 16 3 C 0.17 2.57 6.41 70.18 0.45 3.02 16 4 O -0.40 -7.63 10.30 -148.98 -1.53 -9.16 16 5 C 0.08 1.40 5.23 71.98 0.38 1.77 16 6 C -0.13 -2.08 6.07 29.85 0.18 -1.90 16 7 C 0.52 11.48 7.83 87.66 0.69 12.17 16 8 O -0.59 -17.52 15.98 -3.04 -0.05 -17.56 16 9 N -0.72 -15.01 5.50 -463.06 -2.55 -17.56 16 10 C 0.14 3.66 5.13 86.38 0.44 4.11 16 11 C -0.09 -2.72 2.49 -9.40 -0.02 -2.74 16 12 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 13 C 0.14 5.21 6.65 86.85 0.58 5.79 16 14 N -0.63 -31.85 3.39 -691.99 -2.35 -34.20 16 15 C -0.24 -13.29 10.28 84.03 0.86 -12.42 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 18 N -0.95 -57.51 10.31 21.65 0.22 -57.28 16 19 Si 0.98 45.80 29.55 68.60 2.03 47.82 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 23 C 0.19 9.37 4.97 86.73 0.43 9.80 16 24 C -0.10 -3.57 3.01 -9.61 -0.03 -3.60 16 25 H 0.07 2.49 8.04 -2.38 -0.02 2.47 16 26 C -0.13 -3.68 9.17 71.98 0.66 -3.02 16 27 H 0.25 1.22 7.80 -4.42 -0.03 1.18 16 28 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.04 8.10 -2.38 -0.02 1.02 16 31 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.41 6.92 8.47 -92.70 -0.79 6.13 16 35 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 36 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.02 0.66 7.91 -2.39 -0.02 0.64 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 40 H 0.02 0.88 7.02 -2.38 -0.02 0.86 16 41 H 0.00 -0.11 7.50 -2.39 -0.02 -0.13 16 42 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 43 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 Total: -1.00 -74.00 370.26 2.90 -71.10 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.18 Total: 11.87 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 6.94 Total: 4.97 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -4.67 Total: -109.04 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -1.58 Total: -26.73 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -74.00 2.90 -71.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101960735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.116 kcal (2) G-P(sol) polarization free energy of solvation -73.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds