Wall clock time and date at job start Tue Mar 31 2020 07:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00040 * 2 1 4 4 O 1.42899 * 109.47134 * 134.99171 * 3 2 1 5 5 C 1.42902 * 113.99817 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47372 * 330.00055 * 5 4 3 7 7 C 1.52997 * 109.47045 * 90.00545 * 5 4 3 8 8 C 1.50707 * 109.47120 * 210.00570 * 5 4 3 9 9 O 1.21278 * 119.99699 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99798 * 180.02562 * 8 5 4 11 11 C 1.46502 * 119.99704 * 180.02562 * 10 8 5 12 12 H 1.09008 * 110.56070 * 32.92109 * 11 10 8 13 13 C 1.54855 * 110.62829 * 155.82411 * 11 10 8 14 14 C 1.55841 * 103.44731 * 118.48853 * 13 11 10 15 15 H 1.08996 * 115.56265 * 159.56515 * 14 13 11 16 16 C 1.55847 * 105.06336 * 288.17679 * 14 13 11 17 17 C 1.54855 * 103.44640 * 71.82255 * 16 14 13 18 18 C 1.55842 * 110.62733 * 270.02191 * 11 10 8 19 19 H 1.09001 * 115.56331 * 81.94094 * 18 11 10 20 20 N 1.50242 * 101.05050 * 32.93603 * 14 13 11 21 21 C 1.36938 * 130.83775 * 126.03154 * 20 14 13 22 22 H 1.08003 * 120.00176 * 180.02562 * 21 20 14 23 23 C 1.38817 * 119.99932 * 0.02562 * 21 20 14 24 24 N 1.31620 * 119.99786 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00110 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47376 * 60.00143 * 25 23 21 27 27 H 1.48500 * 109.47469 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47252 * 300.00267 * 25 23 21 29 29 H 1.08006 * 119.99846 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00139 * 359.73091 * 1 2 3 31 31 H 1.08001 * 120.00179 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47425 * 254.99996 * 3 2 1 33 33 H 1.09008 * 109.47003 * 14.99648 * 3 2 1 34 34 H 1.09003 * 109.46879 * 179.97438 * 7 5 4 35 35 H 1.08994 * 109.47087 * 299.99568 * 7 5 4 36 36 H 1.08999 * 109.47164 * 60.00027 * 7 5 4 37 37 H 0.96998 * 120.00770 * 359.97438 * 10 8 5 38 38 H 1.09003 * 110.62191 * 236.97727 * 13 11 10 39 39 H 1.09002 * 110.62040 * 359.97438 * 13 11 10 40 40 H 1.08996 * 110.62870 * 190.30969 * 16 14 13 41 41 H 1.08999 * 110.63060 * 313.17754 * 16 14 13 42 42 H 1.09006 * 110.62478 * 118.49108 * 17 16 14 43 43 H 1.08996 * 110.63082 * 241.35084 * 17 16 14 44 44 H 0.96998 * 119.99513 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9528 5 6 3.9076 2.4354 1.0330 6 1 3.9127 2.9320 0.0627 7 6 3.3027 3.3709 2.0817 8 6 5.3200 2.0864 1.4260 9 8 5.6273 0.9291 1.6190 10 7 6.2412 3.0604 1.5641 11 6 7.6144 2.7210 1.9456 12 1 7.8963 1.7503 1.5375 13 6 8.5991 3.8185 1.4726 14 6 9.2185 4.3469 2.8015 15 1 10.1702 4.8688 2.7019 16 6 8.0765 5.1557 3.4872 17 6 7.0918 4.0582 3.9602 18 6 7.7719 2.7314 3.4960 19 1 7.4451 1.8263 4.0081 20 7 9.2250 3.0959 3.6335 21 6 10.2415 2.4751 4.3092 22 1 10.0477 1.5672 4.8611 23 6 11.5211 3.0128 4.2849 24 7 11.7571 4.1195 3.6127 25 14 12.9078 2.1657 5.2060 26 1 13.0866 0.7901 4.6757 27 1 14.1653 2.9342 5.0236 28 1 12.5740 2.0993 6.6514 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0044 31 1 1.8500 -0.9353 0.0004 32 1 2.4755 1.4868 -0.9926 33 1 1.3854 2.1161 0.2659 34 1 3.8987 4.2815 2.1431 35 1 2.2812 3.6234 1.7974 36 1 3.2977 2.8742 3.0519 37 1 5.9954 3.9860 1.4102 38 1 9.3710 3.3917 0.8322 39 1 8.0658 4.6151 0.9538 40 1 8.4616 5.7184 4.3376 41 1 7.5961 5.8236 2.7722 42 1 6.9886 4.0766 5.0452 43 1 6.1204 4.1814 3.4813 44 1 12.6511 4.4954 3.5960 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110183039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:03 Heat of formation + Delta-G solvation = -10.687108 kcal Electronic energy + Delta-G solvation = -24387.830773 eV Core-core repulsion = 20921.473995 eV Total energy + Delta-G solvation = -3466.356778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.17538 -38.88110 -37.53951 -34.27132 -33.95489 -32.39681 -31.27877 -29.23026 -28.96954 -27.50916 -26.44300 -24.52878 -23.70332 -21.40246 -20.60039 -20.13554 -19.47031 -18.57685 -17.36816 -17.25275 -16.66219 -15.98738 -15.38076 -15.10410 -14.82517 -14.54745 -14.43189 -13.99204 -13.52128 -13.44788 -12.98123 -12.64264 -12.33738 -12.28462 -12.18556 -11.74282 -11.64390 -11.48388 -11.14254 -11.03766 -10.91279 -10.88689 -10.81667 -10.32586 -10.21991 -10.10391 -9.85110 -9.62656 -9.42828 -9.32427 -9.17982 -8.92009 -8.49453 -6.90505 -5.71848 -3.09492 1.85186 2.83112 3.07566 3.41951 3.45697 3.47027 3.89959 4.46073 4.59291 4.75129 4.77986 4.84486 4.94324 5.09089 5.18439 5.20487 5.37846 5.40103 5.48132 5.57107 5.61120 5.81133 5.84941 5.92802 5.97181 6.07229 6.11705 6.28188 6.30673 6.33684 6.34785 6.53436 6.60011 6.68452 6.82032 6.88307 6.98126 7.02462 7.27853 7.53325 7.74692 7.85386 8.16188 8.51897 9.11637 9.73913 10.54196 11.37982 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.003289 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.302700 B = 8511.212647 C = 8906.584571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.352 6.352 5 C 0.070 3.930 6 H 0.084 0.916 7 C -0.170 4.170 8 C 0.509 3.491 9 O -0.522 6.522 10 N -0.710 5.710 11 C 0.128 3.872 12 H 0.084 0.916 13 C -0.141 4.141 14 C 0.157 3.843 15 H 0.153 0.847 16 C -0.138 4.138 17 C -0.130 4.130 18 C 0.128 3.872 19 H 0.086 0.914 20 N -0.589 5.589 21 C -0.211 4.211 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.925 5.925 25 Si 0.917 3.083 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.286 1.286 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.394 0.606 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 1.964 -8.141 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.164 4.164 3 C 0.009 3.991 4 O -0.270 6.270 5 C 0.009 3.991 6 H 0.102 0.898 7 C -0.228 4.228 8 C 0.293 3.707 9 O -0.397 6.397 10 N -0.363 5.363 11 C 0.022 3.978 12 H 0.102 0.898 13 C -0.181 4.181 14 C 0.050 3.950 15 H 0.170 0.830 16 C -0.177 4.177 17 C -0.170 4.170 18 C 0.019 3.981 19 H 0.104 0.896 20 N -0.309 5.309 21 C -0.339 4.339 22 H 0.097 0.903 23 C -0.207 4.207 24 N -0.573 5.573 25 Si 0.748 3.252 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.213 1.213 29 H 0.122 0.878 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.522 0.902 -7.772 20.107 hybrid contribution 0.389 0.244 0.202 0.501 sum -18.133 1.146 -7.571 19.683 Atomic orbital electron populations 1.23815 0.95488 1.02200 1.00575 1.22756 0.95582 0.98357 0.99719 1.21652 0.89080 0.96014 0.92395 1.88095 1.43789 1.35246 1.59874 1.21942 0.90164 0.87128 0.99890 0.89845 1.22239 1.01437 0.99059 1.00068 1.20257 0.86210 0.86121 0.78143 1.90723 1.80496 1.19426 1.49012 1.46182 1.10970 1.09176 1.69948 1.22667 0.78485 0.99225 0.97416 0.89827 1.23307 0.97552 0.96743 1.00510 1.23691 0.97646 0.87548 0.86097 0.83032 1.23055 0.97938 0.96856 0.99853 1.22963 0.97025 0.97296 0.99706 1.23284 0.86567 0.95533 0.92728 0.89595 1.46493 1.02462 1.25504 1.56487 1.19032 0.86765 1.05300 1.22757 0.90349 1.24695 0.97231 0.97865 1.00955 1.69453 1.20571 1.21371 1.45882 0.86104 0.81300 0.78502 0.79328 1.21204 1.21599 1.21266 0.87788 0.88497 0.86358 0.92223 0.92683 0.90788 0.91548 0.90868 0.77145 0.91596 0.92740 0.92662 0.93674 0.93079 0.93111 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 14.31 29.01 0.42 -0.94 16 2 C -0.15 -1.36 9.89 -36.03 -0.36 -1.72 16 3 C 0.08 0.81 6.16 36.01 0.22 1.03 16 4 O -0.35 -4.74 9.50 -55.14 -0.52 -5.27 16 5 C 0.07 0.82 3.14 -27.88 -0.09 0.73 16 6 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 7 C -0.17 -1.58 9.42 37.16 0.35 -1.23 16 8 C 0.51 8.03 7.23 -10.98 -0.08 7.95 16 9 O -0.52 -10.85 16.16 -14.35 -0.23 -11.09 16 10 N -0.71 -10.38 3.60 -51.39 -0.19 -10.56 16 11 C 0.13 2.40 3.13 -65.43 -0.20 2.19 16 12 H 0.08 1.79 7.58 -51.92 -0.39 1.40 16 13 C -0.14 -2.65 6.20 -24.24 -0.15 -2.80 16 14 C 0.16 3.49 4.69 -62.80 -0.29 3.20 16 15 H 0.15 3.87 5.57 -51.93 -0.29 3.58 16 16 C -0.14 -2.60 6.44 -24.23 -0.16 -2.75 16 17 C -0.13 -2.37 6.31 -24.06 -0.15 -2.52 16 18 C 0.13 2.70 5.39 -62.51 -0.34 2.36 16 19 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 20 N -0.59 -14.69 2.98 -145.47 -0.43 -15.12 16 21 C -0.21 -5.84 10.58 -15.06 -0.16 -6.00 16 22 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.92 -26.19 10.48 55.49 0.58 -25.61 16 25 Si 0.92 22.14 29.55 -169.99 -5.02 17.11 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 30 H 0.10 0.59 7.90 -52.49 -0.41 0.18 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.06 0.42 7.59 -51.92 -0.39 0.03 16 34 H 0.07 0.58 7.56 -51.93 -0.39 0.18 16 35 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.39 4.54 7.33 -40.82 -0.30 4.24 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.05 0.84 7.39 -51.93 -0.38 0.46 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.71 7.82 -51.93 -0.41 0.30 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.77 6.40 -51.93 -0.33 0.43 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -32.38 353.85 -8.61 -41.00 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.04 Total: 5.15 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.09 Total: -0.94 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.04 Total: -51.30 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.76 Total: -16.35 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.38 -8.61 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110183039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.308 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds