Wall clock time and date at job start Tue Mar 31 2020 07:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00040 * 2 1 4 4 O 1.42899 * 109.47134 * 134.99171 * 3 2 1 5 5 C 1.42902 * 113.99817 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47372 * 330.00055 * 5 4 3 7 7 C 1.52997 * 109.47045 * 90.00545 * 5 4 3 8 8 C 1.50707 * 109.47120 * 210.00570 * 5 4 3 9 9 O 1.21278 * 119.99699 * 359.97438 * 8 5 4 10 10 N 1.34774 * 119.99798 * 180.02562 * 8 5 4 11 11 C 1.46502 * 119.99704 * 180.02562 * 10 8 5 12 12 H 1.09008 * 110.56070 * 32.92109 * 11 10 8 13 13 C 1.54855 * 110.62829 * 155.82411 * 11 10 8 14 14 C 1.55841 * 103.44731 * 118.48853 * 13 11 10 15 15 H 1.08996 * 115.56265 * 159.56515 * 14 13 11 16 16 C 1.55847 * 105.06336 * 288.17679 * 14 13 11 17 17 C 1.54855 * 103.44640 * 71.82255 * 16 14 13 18 18 C 1.55842 * 110.62733 * 270.02191 * 11 10 8 19 19 H 1.09001 * 115.56331 * 81.94094 * 18 11 10 20 20 N 1.50242 * 101.05050 * 32.93603 * 14 13 11 21 21 C 1.36938 * 130.83775 * 126.03154 * 20 14 13 22 22 H 1.08003 * 120.00176 * 180.02562 * 21 20 14 23 23 C 1.38817 * 119.99932 * 0.02562 * 21 20 14 24 24 N 1.31620 * 119.99786 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00110 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47376 * 60.00143 * 25 23 21 27 27 H 1.48500 * 109.47469 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47252 * 300.00267 * 25 23 21 29 29 H 1.08006 * 119.99846 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.00139 * 359.73091 * 1 2 3 31 31 H 1.08001 * 120.00179 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47425 * 254.99996 * 3 2 1 33 33 H 1.09008 * 109.47003 * 14.99648 * 3 2 1 34 34 H 1.09003 * 109.46879 * 179.97438 * 7 5 4 35 35 H 1.08994 * 109.47087 * 299.99568 * 7 5 4 36 36 H 1.08999 * 109.47164 * 60.00027 * 7 5 4 37 37 H 0.96998 * 120.00770 * 359.97438 * 10 8 5 38 38 H 1.09003 * 110.62191 * 236.97727 * 13 11 10 39 39 H 1.09002 * 110.62040 * 359.97438 * 13 11 10 40 40 H 1.08996 * 110.62870 * 190.30969 * 16 14 13 41 41 H 1.08999 * 110.63060 * 313.17754 * 16 14 13 42 42 H 1.09006 * 110.62478 * 118.49108 * 17 16 14 43 43 H 1.08996 * 110.63082 * 241.35084 * 17 16 14 44 44 H 0.96998 * 119.99513 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9528 5 6 3.9076 2.4354 1.0330 6 1 3.9127 2.9320 0.0627 7 6 3.3027 3.3709 2.0817 8 6 5.3200 2.0864 1.4260 9 8 5.6273 0.9291 1.6190 10 7 6.2412 3.0604 1.5641 11 6 7.6144 2.7210 1.9456 12 1 7.8963 1.7503 1.5375 13 6 8.5991 3.8185 1.4726 14 6 9.2185 4.3469 2.8015 15 1 10.1702 4.8688 2.7019 16 6 8.0765 5.1557 3.4872 17 6 7.0918 4.0582 3.9602 18 6 7.7719 2.7314 3.4960 19 1 7.4451 1.8263 4.0081 20 7 9.2250 3.0959 3.6335 21 6 10.2415 2.4751 4.3092 22 1 10.0477 1.5672 4.8611 23 6 11.5211 3.0128 4.2849 24 7 11.7571 4.1195 3.6127 25 14 12.9078 2.1657 5.2060 26 1 13.0866 0.7901 4.6757 27 1 14.1653 2.9342 5.0236 28 1 12.5740 2.0993 6.6514 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0044 31 1 1.8500 -0.9353 0.0004 32 1 2.4755 1.4868 -0.9926 33 1 1.3854 2.1161 0.2659 34 1 3.8987 4.2815 2.1431 35 1 2.2812 3.6234 1.7974 36 1 3.2977 2.8742 3.0519 37 1 5.9954 3.9860 1.4102 38 1 9.3710 3.3917 0.8322 39 1 8.0658 4.6151 0.9538 40 1 8.4616 5.7184 4.3376 41 1 7.5961 5.8236 2.7722 42 1 6.9886 4.0766 5.0452 43 1 6.1204 4.1814 3.4813 44 1 12.6511 4.4954 3.5960 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110183039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:02 Heat of formation + Delta-G solvation = -30.914151 kcal Electronic energy + Delta-G solvation = -24388.707884 eV Core-core repulsion = 20921.473995 eV Total energy + Delta-G solvation = -3467.233888 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56360 -40.18230 -38.64575 -35.51659 -34.95085 -34.24405 -32.24025 -30.99083 -30.57124 -29.08319 -27.12909 -26.24065 -24.90144 -22.86353 -21.86587 -21.20968 -20.82676 -20.15744 -18.96322 -18.32193 -17.90725 -17.02911 -16.82051 -16.49127 -16.25106 -15.92137 -15.64610 -15.54244 -14.78081 -14.30506 -14.05741 -13.91382 -13.69118 -13.52008 -13.32095 -13.20364 -12.95724 -12.86127 -12.78879 -12.59106 -12.43934 -12.36511 -12.01612 -11.90841 -11.81961 -11.56428 -11.22210 -11.10771 -11.02488 -10.76813 -10.52505 -10.21956 -9.99554 -8.85688 -7.80199 -5.18974 1.21571 1.45392 1.47695 1.53782 1.62882 1.98626 2.49051 3.02026 3.33149 3.49779 3.70859 3.92989 3.97691 4.04227 4.12209 4.13582 4.15782 4.25255 4.43188 4.44971 4.47789 4.59705 4.61760 4.72220 4.75639 4.82123 4.85609 4.97710 5.01053 5.07511 5.16182 5.22771 5.27622 5.33540 5.47455 5.54904 5.67499 5.71902 5.76593 5.89982 6.16047 6.27055 6.66428 7.05826 7.33138 7.68559 8.54806 9.26606 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.003289 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.302700 B = 8511.212647 C = 8906.584571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.082 3.918 4 O -0.390 6.390 5 C 0.076 3.924 6 H 0.122 0.878 7 C -0.166 4.166 8 C 0.504 3.496 9 O -0.581 6.581 10 N -0.692 5.692 11 C 0.146 3.854 12 H 0.048 0.952 13 C -0.125 4.125 14 C 0.140 3.860 15 H 0.119 0.881 16 C -0.125 4.125 17 C -0.115 4.115 18 C 0.115 3.885 19 H 0.062 0.938 20 N -0.618 5.618 21 C -0.228 4.228 22 H 0.068 0.932 23 C -0.062 4.062 24 N -0.943 5.943 25 Si 0.975 3.025 26 H -0.285 1.285 27 H -0.289 1.289 28 H -0.282 1.282 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.416 0.584 38 H 0.044 0.956 39 H 0.101 0.899 40 H 0.035 0.965 41 H 0.092 0.908 42 H 0.040 0.960 43 H 0.091 0.909 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.018 4.045 -9.247 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.007 3.993 4 O -0.309 6.309 5 C 0.015 3.985 6 H 0.139 0.861 7 C -0.224 4.224 8 C 0.291 3.709 9 O -0.460 6.460 10 N -0.346 5.346 11 C 0.038 3.962 12 H 0.066 0.934 13 C -0.165 4.165 14 C 0.035 3.965 15 H 0.136 0.864 16 C -0.164 4.164 17 C -0.154 4.154 18 C 0.008 3.992 19 H 0.080 0.920 20 N -0.340 5.340 21 C -0.357 4.357 22 H 0.086 0.914 23 C -0.255 4.255 24 N -0.592 5.592 25 Si 0.804 3.196 26 H -0.211 1.211 27 H -0.215 1.215 28 H -0.208 1.208 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.255 0.745 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.054 0.946 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.109 0.891 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -21.463 3.030 -8.899 23.431 hybrid contribution 1.195 -0.481 0.520 1.389 sum -20.267 2.549 -8.380 22.079 Atomic orbital electron populations 1.24049 0.94770 1.03587 0.97585 1.22779 0.96440 0.97981 1.02566 1.21853 0.88593 0.96733 0.92154 1.88061 1.45016 1.36634 1.61189 1.22030 0.86900 0.87158 1.02404 0.86103 1.22264 1.03292 0.98798 0.98001 1.21218 0.87985 0.85161 0.76539 1.90706 1.81735 1.22056 1.51523 1.45872 1.09054 1.10382 1.69269 1.22085 0.80864 0.97795 0.95421 0.93363 1.23137 0.97115 0.97548 0.98696 1.23631 0.97886 0.87182 0.87847 0.86353 1.22951 0.96746 0.96874 0.99856 1.22865 0.98317 0.94764 0.99466 1.23415 0.85214 0.96289 0.94330 0.91960 1.46761 1.03457 1.26766 1.57053 1.19259 0.88199 1.05295 1.22946 0.91385 1.25396 0.99070 0.98787 1.02231 1.69677 1.20468 1.22219 1.46848 0.85198 0.78676 0.77435 0.78286 1.21134 1.21457 1.20831 0.86873 0.86576 0.88276 0.91274 0.90113 0.88543 0.88905 0.93072 0.74499 0.93700 0.88076 0.94640 0.88964 0.94079 0.89079 0.94086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 14.31 67.78 0.97 -1.04 16 2 C -0.18 -3.14 9.89 25.65 0.25 -2.89 16 3 C 0.08 1.37 6.16 71.24 0.44 1.81 16 4 O -0.39 -9.89 9.50 -129.94 -1.23 -11.12 16 5 C 0.08 1.52 3.14 29.85 0.09 1.62 16 6 H 0.12 1.53 7.79 -2.39 -0.02 1.51 16 7 C -0.17 -2.37 9.42 71.98 0.68 -1.69 16 8 C 0.50 15.15 7.23 87.66 0.63 15.79 16 9 O -0.58 -24.72 16.16 16.01 0.26 -24.46 16 10 N -0.69 -18.36 3.60 -434.90 -1.57 -19.93 16 11 C 0.15 5.40 3.13 46.61 0.15 5.54 16 12 H 0.05 2.15 7.58 -2.38 -0.02 2.13 16 13 C -0.13 -4.53 6.20 32.21 0.20 -4.33 16 14 C 0.14 6.23 4.69 46.23 0.22 6.44 16 15 H 0.12 6.16 5.57 -2.39 -0.01 6.14 16 16 C -0.13 -4.42 6.44 32.21 0.21 -4.21 16 17 C -0.11 -3.93 6.31 32.32 0.20 -3.73 16 18 C 0.12 4.93 5.39 46.30 0.25 5.18 16 19 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 20 N -0.62 -31.71 2.98 -614.16 -1.83 -33.55 16 21 C -0.23 -13.15 10.58 84.03 0.89 -12.26 16 22 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 23 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 24 N -0.94 -54.94 10.48 21.65 0.23 -54.72 16 25 Si 0.98 46.75 29.55 68.60 2.03 48.77 16 26 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 29 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.12 0.98 7.90 -2.91 -0.02 0.96 16 31 H 0.10 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.08 0.90 7.59 -2.38 -0.02 0.88 16 34 H 0.10 0.93 7.56 -2.39 -0.02 0.91 16 35 H 0.09 0.88 7.87 -2.39 -0.02 0.86 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.42 7.41 7.33 -92.71 -0.68 6.73 16 38 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.10 2.68 7.39 -2.39 -0.02 2.67 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 2.40 7.82 -2.39 -0.02 2.38 16 42 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.09 2.36 6.40 -2.39 -0.02 2.34 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -76.58 353.85 3.83 -72.75 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.30 Total: 19.10 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.65 Total: 3.15 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -3.17 Total: -108.19 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.98 Total: -35.59 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.58 3.83 -72.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110183039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.837 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds