Wall clock time and date at job start Tue Mar 31 2020 07:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.36939 * 120.00530 * 204.99728 * 8 5 4 10 10 H 1.07999 * 119.99437 * 0.02562 * 9 8 5 11 11 C 1.38808 * 120.00276 * 179.97438 * 9 8 5 12 12 N 1.31619 * 120.00333 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00092 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47575 * 89.99452 * 13 11 9 15 15 H 1.48499 * 109.46890 * 209.99907 * 13 11 9 16 16 H 1.48497 * 109.46723 * 329.99136 * 13 11 9 17 17 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 18 18 C 1.34777 * 119.99688 * 274.99602 * 17 2 1 19 19 O 1.21279 * 119.99974 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99799 * 180.02562 * 18 17 2 21 21 C 1.53004 * 109.46982 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 C 1.34518 * 125.78869 * 90.00321 * 22 21 20 24 24 C 1.41380 * 106.83928 * 180.02562 * 23 22 21 25 25 C 1.34511 * 106.84413 * 359.97438 * 24 23 22 26 26 O 1.34299 * 125.79121 * 269.69218 * 22 21 20 27 27 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 33 33 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 34 34 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 35 35 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 36 36 H 0.96993 * 120.00613 * 180.02562 * 12 11 9 37 37 H 0.96993 * 119.99992 * 94.99462 * 17 2 1 38 38 H 1.08995 * 109.47366 * 299.99979 * 20 18 17 39 39 H 1.08996 * 109.47113 * 60.00496 * 20 18 17 40 40 H 1.08995 * 109.46885 * 300.00068 * 21 20 18 41 41 H 1.08997 * 109.47269 * 59.99750 * 21 20 18 42 42 H 1.07997 * 126.57990 * 0.02676 * 23 22 21 43 43 H 1.08007 * 126.57966 * 179.97438 * 24 23 22 44 44 H 1.07996 * 125.79186 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9857 0.2805 10 1 5.9386 -0.1791 -0.1881 11 6 5.9520 -1.6685 1.3527 12 7 7.1443 -1.3332 1.7981 13 14 5.0104 -3.0632 2.1636 14 1 5.3479 -4.3442 1.4927 15 1 5.3827 -3.1429 3.5990 16 1 3.5519 -2.8109 2.0440 17 7 2.0184 -0.6907 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8583 1.1582 2.4117 20 6 2.6500 -0.7288 3.5874 21 6 2.7008 0.2542 4.7589 22 6 3.2043 -0.4560 5.9890 23 6 4.4916 -0.5620 6.3646 24 6 4.5073 -1.3041 7.5679 25 6 3.2288 -1.6067 7.8560 26 8 2.4434 -1.0854 6.8992 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7515 -1.7715 -1.2057 31 1 1.6053 -0.2617 -2.1370 32 1 3.7721 -2.2741 -2.6701 33 1 3.6262 -0.6886 -3.4658 34 1 5.1508 -1.1485 -2.6699 35 1 3.6647 -2.0585 0.2385 36 1 7.5342 -1.8105 2.5470 37 1 2.2490 -1.6319 1.1525 38 1 1.9778 -1.5510 3.8325 39 1 3.6493 -1.1205 3.3978 40 1 3.3728 1.0767 4.5140 41 1 1.7014 0.6456 4.9483 42 1 5.3486 -0.1578 5.8464 43 1 5.3788 -1.5759 8.1451 44 1 2.8906 -2.1692 8.7136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133641032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:28 Heat of formation + Delta-G solvation = -16.430659 kcal Electronic energy + Delta-G solvation = -24780.267139 eV Core-core repulsion = 21313.661302 eV Total energy + Delta-G solvation = -3466.605837 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38445 -39.53030 -37.06952 -34.43097 -33.72162 -32.63197 -32.28555 -30.92899 -29.20184 -28.41879 -26.43307 -24.43400 -23.37351 -21.57892 -21.16257 -20.54899 -20.11543 -19.53398 -17.59803 -17.36640 -16.49070 -16.12896 -15.68248 -15.24562 -14.81500 -14.43903 -14.19215 -13.80241 -13.42485 -13.20460 -12.86574 -12.80561 -12.64231 -12.49106 -12.41520 -12.20900 -12.05513 -11.95429 -11.77530 -11.71519 -11.19173 -11.02708 -10.79061 -10.65777 -10.52269 -10.24296 -10.00910 -9.74866 -9.62808 -9.38914 -9.02470 -8.52509 -8.27752 -7.28372 -5.80499 -3.14868 1.87109 2.79676 3.08255 3.10590 3.15987 3.29816 3.37788 3.72511 4.48489 4.79765 4.97683 5.14023 5.15751 5.19152 5.23363 5.31511 5.38712 5.48305 5.49523 5.54059 5.71878 5.76932 5.85931 5.88001 5.99728 6.02478 6.04048 6.13514 6.15566 6.24617 6.26354 6.32053 6.33220 6.39439 6.47451 6.69235 6.77323 6.95847 7.02019 7.30624 7.94487 7.99629 8.37862 8.71998 9.15122 9.87033 10.07094 11.38288 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.005955 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.368001 B = 4700.799709 C = 6067.139674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.087 0.913 4 C -0.136 4.136 5 C 0.175 3.825 6 H 0.057 0.943 7 C -0.164 4.164 8 N -0.742 5.742 9 C -0.232 4.232 10 H 0.090 0.910 11 C 0.005 3.995 12 N -0.931 5.931 13 Si 0.876 3.124 14 H -0.289 1.289 15 H -0.287 1.287 16 H -0.281 1.281 17 N -0.704 5.704 18 C 0.530 3.470 19 O -0.555 6.555 20 C -0.144 4.144 21 C -0.020 4.020 22 C -0.009 4.009 23 C -0.205 4.205 24 C -0.210 4.210 25 C -0.055 4.055 26 O -0.179 6.179 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.354 0.646 36 H 0.259 0.741 37 H 0.398 0.602 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.152 0.848 43 H 0.146 0.854 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 -1.160 3.550 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.175 4.175 5 C 0.066 3.934 6 H 0.075 0.925 7 C -0.224 4.224 8 N -0.386 5.386 9 C -0.363 4.363 10 H 0.108 0.892 11 C -0.191 4.191 12 N -0.580 5.580 13 Si 0.708 3.292 14 H -0.216 1.216 15 H -0.213 1.213 16 H -0.209 1.209 17 N -0.357 5.357 18 C 0.317 3.683 19 O -0.434 6.434 20 C -0.184 4.184 21 C -0.057 4.057 22 C -0.059 4.059 23 C -0.224 4.224 24 C -0.229 4.229 25 C -0.122 4.122 26 O -0.075 6.075 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.187 0.813 36 H 0.069 0.931 37 H 0.236 0.764 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.169 0.831 43 H 0.164 0.836 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.272 -0.229 3.602 12.791 hybrid contribution 0.036 -1.824 0.733 1.966 sum -12.236 -2.053 4.335 13.142 Atomic orbital electron populations 1.22203 0.96172 1.01561 1.02099 1.20858 0.92580 0.97963 0.84347 0.89452 1.22247 0.97803 1.00529 0.96909 1.20248 0.89426 0.96222 0.87514 0.92525 1.22397 1.02024 1.00153 0.97866 1.42830 1.19275 1.40119 1.36381 1.19066 0.91527 1.14545 1.11124 0.89245 1.24621 0.96507 0.99150 0.98785 1.69670 1.15942 1.43506 1.28847 0.86884 0.78659 0.83960 0.79697 1.21602 1.21301 1.20869 1.46136 1.66360 1.14122 1.09128 1.20198 0.76583 0.87001 0.84540 1.90631 1.51306 1.15893 1.85529 1.21797 1.04314 0.99317 0.92938 1.19831 1.03529 0.96276 0.86099 1.22531 0.89870 1.00220 0.93250 1.21762 0.97231 1.05024 0.98410 1.21851 0.97708 1.04092 0.99221 1.23932 0.89771 1.03642 0.94892 1.83987 1.38013 1.55607 1.29929 0.91968 0.92943 0.92338 0.91931 0.90366 0.93743 0.94213 0.92377 0.81263 0.93100 0.76432 0.89396 0.87926 0.87708 0.89576 0.83051 0.83597 0.78387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 2 C 0.15 2.23 2.57 -67.93 -0.17 2.05 16 3 H 0.09 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.14 -1.89 4.43 -26.73 -0.12 -2.01 16 5 C 0.18 3.09 2.89 -67.93 -0.20 2.89 16 6 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 7 C -0.16 -2.68 9.49 37.16 0.35 -2.32 16 8 N -0.74 -15.78 3.65 -53.43 -0.19 -15.97 16 9 C -0.23 -6.13 10.41 -15.06 -0.16 -6.28 16 10 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 11 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 12 N -0.93 -28.06 13.97 55.49 0.78 -27.29 16 13 Si 0.88 20.46 25.12 -169.99 -4.27 16.19 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 H -0.28 -5.61 4.59 56.52 0.26 -5.35 16 17 N -0.70 -11.94 3.80 -53.80 -0.20 -12.15 16 18 C 0.53 9.82 7.79 -10.99 -0.09 9.73 16 19 O -0.55 -11.41 15.64 5.56 0.09 -11.33 16 20 C -0.14 -2.50 5.24 -27.88 -0.15 -2.64 16 21 C -0.02 -0.32 5.04 -27.88 -0.14 -0.46 16 22 C -0.01 -0.14 6.57 -35.62 -0.23 -0.38 16 23 C -0.21 -3.41 10.81 -39.70 -0.43 -3.84 16 24 C -0.21 -2.98 10.91 -39.70 -0.43 -3.42 16 25 C -0.06 -0.71 12.09 29.41 0.36 -0.36 16 26 O -0.18 -2.75 10.65 5.71 0.06 -2.69 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.35 7.23 3.78 -40.82 -0.15 7.07 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.40 6.69 5.10 -40.82 -0.21 6.48 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.10 2.03 4.99 -51.93 -0.26 1.77 16 40 H 0.10 1.76 8.10 -51.93 -0.42 1.34 16 41 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 42 H 0.15 2.54 8.06 -52.49 -0.42 2.12 16 43 H 0.15 1.73 8.06 -52.48 -0.42 1.30 16 44 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -31.45 354.41 -6.61 -38.06 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -7.05 Total: 18.50 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.15 Total: -8.67 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.38 Total: -55.41 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.15 Total: -14.02 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.27 Total: 16.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.45 -6.61 -38.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133641032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.628 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds