Wall clock time and date at job start Tue Mar 31 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.36939 * 120.00530 * 204.99728 * 8 5 4 10 10 H 1.07999 * 119.99437 * 0.02562 * 9 8 5 11 11 C 1.38808 * 120.00276 * 179.97438 * 9 8 5 12 12 N 1.31619 * 120.00333 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00092 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47575 * 89.99452 * 13 11 9 15 15 H 1.48499 * 109.46890 * 209.99907 * 13 11 9 16 16 H 1.48497 * 109.46723 * 329.99136 * 13 11 9 17 17 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 18 18 C 1.34777 * 119.99688 * 274.99602 * 17 2 1 19 19 O 1.21279 * 119.99974 * 0.02562 * 18 17 2 20 20 C 1.50698 * 119.99799 * 180.02562 * 18 17 2 21 21 C 1.53004 * 109.46982 * 180.02562 * 20 18 17 22 22 C 1.50698 * 109.46982 * 180.02562 * 21 20 18 23 23 C 1.34518 * 125.78869 * 90.00321 * 22 21 20 24 24 C 1.41380 * 106.83928 * 180.02562 * 23 22 21 25 25 C 1.34511 * 106.84413 * 359.97438 * 24 23 22 26 26 O 1.34299 * 125.79121 * 269.69218 * 22 21 20 27 27 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 28 28 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 30 30 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 31 31 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 32 32 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 33 33 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 34 34 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 35 35 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 36 36 H 0.96993 * 120.00613 * 180.02562 * 12 11 9 37 37 H 0.96993 * 119.99992 * 94.99462 * 17 2 1 38 38 H 1.08995 * 109.47366 * 299.99979 * 20 18 17 39 39 H 1.08996 * 109.47113 * 60.00496 * 20 18 17 40 40 H 1.08995 * 109.46885 * 300.00068 * 21 20 18 41 41 H 1.08997 * 109.47269 * 59.99750 * 21 20 18 42 42 H 1.07997 * 126.57990 * 0.02676 * 23 22 21 43 43 H 1.08007 * 126.57966 * 179.97438 * 24 23 22 44 44 H 1.07996 * 125.79186 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3943 -0.9857 0.2805 10 1 5.9386 -0.1791 -0.1881 11 6 5.9520 -1.6685 1.3527 12 7 7.1443 -1.3332 1.7981 13 14 5.0104 -3.0632 2.1636 14 1 5.3479 -4.3442 1.4927 15 1 5.3827 -3.1429 3.5990 16 1 3.5519 -2.8109 2.0440 17 7 2.0184 -0.6907 1.1962 18 6 2.1471 -0.0184 2.3571 19 8 1.8583 1.1582 2.4117 20 6 2.6500 -0.7288 3.5874 21 6 2.7008 0.2542 4.7589 22 6 3.2043 -0.4560 5.9890 23 6 4.4916 -0.5620 6.3646 24 6 4.5073 -1.3041 7.5679 25 6 3.2288 -1.6067 7.8560 26 8 2.4434 -1.0854 6.8992 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7515 -1.7715 -1.2057 31 1 1.6053 -0.2617 -2.1370 32 1 3.7721 -2.2741 -2.6701 33 1 3.6262 -0.6886 -3.4658 34 1 5.1508 -1.1485 -2.6699 35 1 3.6647 -2.0585 0.2385 36 1 7.5342 -1.8105 2.5470 37 1 2.2490 -1.6319 1.1525 38 1 1.9778 -1.5510 3.8325 39 1 3.6493 -1.1205 3.3978 40 1 3.3728 1.0767 4.5140 41 1 1.7014 0.6456 4.9483 42 1 5.3486 -0.1578 5.8464 43 1 5.3788 -1.5759 8.1451 44 1 2.8906 -2.1692 8.7136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133641032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:27 Heat of formation + Delta-G solvation = -36.845923 kcal Electronic energy + Delta-G solvation = -24781.152411 eV Core-core repulsion = 21313.661302 eV Total energy + Delta-G solvation = -3467.491109 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.53508 -40.94458 -38.53268 -35.97562 -35.07294 -34.12631 -33.77106 -32.44023 -30.81907 -29.63717 -27.61134 -25.70307 -25.31167 -22.73466 -22.45192 -21.98829 -21.32600 -20.99396 -19.56719 -18.60565 -17.74246 -17.46624 -16.91170 -16.62503 -16.55204 -16.06100 -15.47818 -15.14841 -15.04225 -14.53885 -14.35818 -14.23957 -13.99627 -13.83231 -13.68429 -13.53325 -13.41187 -13.22746 -13.01570 -12.89321 -12.76508 -12.48647 -12.37301 -12.12857 -11.99682 -11.79136 -11.60479 -11.44916 -10.99947 -10.92146 -10.81251 -9.95166 -9.43669 -9.19315 -7.96524 -5.27620 0.72291 1.21248 1.36922 1.46616 1.63167 1.70283 1.98983 2.40355 2.49286 3.35248 3.55366 3.70594 3.81085 3.83055 3.95593 4.07657 4.10849 4.15672 4.26497 4.34734 4.44128 4.55419 4.66088 4.68891 4.81553 4.85706 4.86009 4.90343 4.92366 5.00664 5.05356 5.09053 5.15219 5.18309 5.36664 5.38830 5.53795 5.59976 5.70476 5.84099 6.14876 6.25867 6.59087 7.13618 7.30592 7.88784 8.08781 9.25694 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.005955 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.368001 B = 4700.799709 C = 6067.139674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.059 0.941 4 C -0.122 4.122 5 C 0.165 3.835 6 H 0.031 0.969 7 C -0.156 4.156 8 N -0.739 5.739 9 C -0.213 4.213 10 H 0.046 0.954 11 C -0.061 4.061 12 N -0.985 5.985 13 Si 0.941 3.059 14 H -0.291 1.291 15 H -0.302 1.302 16 H -0.233 1.233 17 N -0.702 5.702 18 C 0.523 3.477 19 O -0.582 6.582 20 C -0.141 4.141 21 C -0.013 4.013 22 C -0.023 4.023 23 C -0.230 4.230 24 C -0.230 4.230 25 C -0.035 4.035 26 O -0.184 6.184 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.362 0.638 36 H 0.253 0.747 37 H 0.400 0.600 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.166 0.834 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.454 -3.199 3.405 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.037 3.963 3 H 0.077 0.923 4 C -0.160 4.160 5 C 0.058 3.942 6 H 0.050 0.950 7 C -0.216 4.216 8 N -0.385 5.385 9 C -0.344 4.344 10 H 0.064 0.936 11 C -0.252 4.252 12 N -0.637 5.637 13 Si 0.771 3.229 14 H -0.219 1.219 15 H -0.229 1.229 16 H -0.158 1.158 17 N -0.354 5.354 18 C 0.311 3.689 19 O -0.463 6.463 20 C -0.181 4.181 21 C -0.051 4.051 22 C -0.073 4.073 23 C -0.249 4.249 24 C -0.249 4.249 25 C -0.101 4.101 26 O -0.080 6.080 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.197 0.803 36 H 0.062 0.938 37 H 0.238 0.762 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.152 0.848 43 H 0.184 0.816 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -15.803 -2.266 3.389 16.321 hybrid contribution 1.176 -1.087 0.717 1.755 sum -14.627 -3.353 4.106 15.558 Atomic orbital electron populations 1.22096 0.93475 1.02860 1.02477 1.21025 0.94618 0.96491 0.84151 0.92282 1.22178 0.94161 1.02048 0.97637 1.20493 0.92342 0.94497 0.86883 0.95037 1.22266 1.00038 1.01242 0.98031 1.42756 1.17601 1.40624 1.37469 1.18911 0.92946 1.12459 1.10109 0.93562 1.25357 0.97527 1.02444 0.99885 1.69880 1.18442 1.45575 1.29775 0.85780 0.80134 0.79758 0.77252 1.21856 1.22909 1.15777 1.46204 1.65763 1.14128 1.09309 1.20440 0.76401 0.86784 0.85319 1.90615 1.52662 1.17005 1.85994 1.21788 1.03232 1.00189 0.92897 1.19687 1.03659 0.95675 0.86080 1.22399 0.89842 1.01267 0.93802 1.21907 0.97097 1.06060 0.99885 1.22153 0.99462 1.04514 0.98767 1.24866 0.89008 1.01632 0.94619 1.83991 1.38260 1.55605 1.30174 0.89572 0.91092 0.94055 0.89817 0.86783 0.92555 0.90814 0.95612 0.80337 0.93802 0.76230 0.86809 0.90405 0.89473 0.88447 0.84765 0.81606 0.73565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.48 71.98 0.68 -2.57 16 2 C 0.14 3.95 2.57 44.99 0.12 4.06 16 3 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 4 C -0.12 -2.93 4.43 30.59 0.14 -2.79 16 5 C 0.17 5.61 2.89 44.99 0.13 5.74 16 6 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 7 C -0.16 -4.76 9.49 71.98 0.68 -4.07 16 8 N -0.74 -30.97 3.65 -322.95 -1.18 -32.15 16 9 C -0.21 -11.59 10.41 84.03 0.87 -10.71 16 10 H 0.05 2.88 8.06 -2.91 -0.02 2.85 16 11 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 12 N -0.99 -62.41 13.97 21.65 0.30 -62.11 16 13 Si 0.94 42.79 25.12 68.60 1.72 44.51 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 15 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 16 H -0.23 -8.48 4.59 99.48 0.46 -8.03 16 17 N -0.70 -22.51 3.80 -442.53 -1.68 -24.19 16 18 C 0.52 19.11 7.79 87.66 0.68 19.79 16 19 O -0.58 -24.17 15.64 -3.03 -0.05 -24.22 16 20 C -0.14 -4.81 5.24 29.85 0.16 -4.65 16 21 C -0.01 -0.44 5.04 29.85 0.15 -0.29 16 22 C -0.02 -0.76 6.57 24.83 0.16 -0.60 16 23 C -0.23 -7.80 10.81 22.19 0.24 -7.56 16 24 C -0.23 -6.26 10.91 22.19 0.24 -6.01 16 25 C -0.03 -0.79 12.09 66.97 0.81 0.02 16 26 O -0.18 -5.29 10.65 -2.49 -0.03 -5.31 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.36 13.97 3.78 -92.71 -0.35 13.62 16 36 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.40 12.23 5.10 -92.71 -0.47 11.76 16 38 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.08 3.07 4.99 -2.39 -0.01 3.06 16 40 H 0.09 3.11 8.10 -2.39 -0.02 3.09 16 41 H 0.10 2.92 8.10 -2.39 -0.02 2.90 16 42 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 43 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 44 H 0.25 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -73.65 354.41 4.55 -69.10 By element: Atomic # 1 Polarization: 47.11 SS G_CDS: -0.08 Total: 47.03 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 5.53 Total: -12.66 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -2.56 Total: -118.45 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.07 Total: -29.53 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.72 Total: 44.51 kcal Total: -73.65 4.55 -69.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133641032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.257 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds