Wall clock time and date at job start Tue Mar 31 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47001 * 2 1 4 4 C 1.53003 * 109.47229 * 240.00196 * 2 1 3 5 5 C 1.52997 * 109.47310 * 174.99741 * 4 2 1 6 6 H 1.09005 * 109.47168 * 55.00243 * 5 4 2 7 7 C 1.53002 * 109.47248 * 175.00057 * 5 4 2 8 8 N 1.46496 * 109.47387 * 295.00044 * 5 4 2 9 9 C 1.34777 * 120.00271 * 154.99671 * 8 5 4 10 10 O 1.21278 * 119.99854 * 0.02562 * 9 8 5 11 11 C 1.50703 * 120.00161 * 180.02562 * 9 8 5 12 12 C 1.53000 * 109.46912 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 9 14 14 C 1.34505 * 125.79145 * 89.99935 * 13 12 11 15 15 C 1.41385 * 106.84433 * 179.97438 * 14 13 12 16 16 C 1.34520 * 106.83707 * 0.02562 * 15 14 13 17 17 O 1.34302 * 108.41864 * 359.73604 * 16 15 14 18 18 N 1.46503 * 109.47585 * 120.00250 * 2 1 3 19 19 C 1.36935 * 119.99747 * 275.00283 * 18 2 1 20 20 H 1.07996 * 120.00552 * 359.97438 * 19 18 2 21 21 C 1.38820 * 119.99726 * 179.97438 * 19 18 2 22 22 N 1.31614 * 119.99700 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00029 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47219 * 90.00153 * 23 21 19 25 25 H 1.48497 * 109.47171 * 210.00371 * 23 21 19 26 26 H 1.48503 * 109.47292 * 330.00448 * 23 21 19 27 27 H 1.09001 * 109.46986 * 299.99602 * 1 2 3 28 28 H 1.08991 * 109.47203 * 59.99791 * 1 2 3 29 29 H 1.09004 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46872 * 54.99847 * 4 2 1 31 31 H 1.09001 * 109.47075 * 295.00260 * 4 2 1 32 32 H 1.09005 * 109.46885 * 60.00012 * 7 5 4 33 33 H 1.08991 * 109.47341 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46953 * 300.00221 * 7 5 4 35 35 H 0.97005 * 120.00266 * 335.00254 * 8 5 4 36 36 H 1.09002 * 109.47152 * 60.00245 * 11 9 8 37 37 H 1.09001 * 109.46980 * 300.00345 * 11 9 8 38 38 H 1.09001 * 109.47194 * 299.99742 * 12 11 9 39 39 H 1.08992 * 109.47399 * 59.99914 * 12 11 9 40 40 H 1.08006 * 126.58228 * 0.03440 * 14 13 12 41 41 H 1.07993 * 126.58507 * 179.97438 * 15 14 13 42 42 H 1.07994 * 125.78959 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00099 * 94.99514 * 18 2 1 44 44 H 0.97006 * 119.99792 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3869 7 6 4.0851 -1.4382 -2.4926 8 7 3.9479 0.7894 -1.4925 9 6 5.1611 1.2136 -1.0867 10 8 5.9359 0.4340 -0.5741 11 6 5.5550 2.6567 -1.2701 12 6 6.9703 2.8716 -0.7299 13 6 7.3639 4.3148 -0.9127 14 6 7.1584 5.3046 -0.0255 15 6 7.6811 6.4856 -0.6009 16 6 8.1743 6.1468 -1.8057 17 8 7.9843 4.8296 -1.9868 18 7 2.0184 -0.6907 1.1961 19 6 2.1492 -0.0075 2.3757 20 1 1.8927 1.0404 2.4242 21 6 2.6115 -0.6621 3.5092 22 7 2.7367 -0.0057 4.6431 23 14 3.0546 -2.4749 3.4256 24 1 4.4872 -2.6180 3.0617 25 1 2.8146 -3.1047 4.7488 26 1 2.2142 -3.1430 2.3996 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -0.2616 -2.1370 31 1 1.7516 -1.7715 -1.2057 32 1 3.6545 -1.0591 -3.4195 33 1 5.1713 -1.3609 -2.5388 34 1 3.8001 -2.4818 -2.3596 35 1 3.3284 1.4130 -1.9028 36 1 4.8578 3.2953 -0.7277 37 1 5.5290 2.9085 -2.3303 38 1 6.9967 2.6196 0.3303 39 1 7.6672 2.2330 -1.2725 40 1 6.6857 5.2145 0.9414 41 1 7.6832 7.4708 -0.1586 42 1 8.6474 6.8189 -2.5062 43 1 2.2491 -1.6318 1.1525 44 1 3.0594 -0.4632 5.4353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133641034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:33 Heat of formation + Delta-G solvation = -26.578796 kcal Electronic energy + Delta-G solvation = -23761.161435 eV Core-core repulsion = 20294.115541 eV Total energy + Delta-G solvation = -3467.045893 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.62234 -39.64856 -37.06362 -34.63721 -33.98140 -32.85161 -32.13942 -30.89475 -29.25100 -28.66730 -26.41903 -24.65919 -23.28251 -21.81424 -21.28208 -20.45448 -20.11352 -19.81177 -17.72459 -17.50264 -16.70209 -16.14969 -15.80901 -15.50371 -14.75782 -14.53378 -14.11318 -13.97112 -13.65060 -13.25620 -12.93601 -12.87180 -12.75452 -12.63156 -12.47028 -12.34203 -12.14259 -11.98069 -11.92470 -11.68841 -11.23163 -11.07846 -10.89039 -10.65147 -10.48283 -10.27559 -9.99560 -9.94550 -9.57979 -9.53825 -8.88252 -8.75037 -8.51899 -7.21791 -5.72000 -3.06677 1.64142 2.54596 2.88444 2.94830 3.42135 3.46041 3.47576 3.51187 4.57597 4.64997 4.85624 4.91793 4.97310 4.99739 5.08928 5.21955 5.26446 5.32619 5.50310 5.54454 5.60069 5.69906 5.75538 5.77776 5.82387 5.88424 5.91803 5.96619 6.01477 6.11863 6.19251 6.25563 6.32604 6.43544 6.44486 6.55465 6.75600 6.85071 6.99259 7.07538 7.76673 8.03165 8.46862 8.52591 9.25599 9.98700 10.17855 11.46605 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003958 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.982952 B = 7073.180164 C = 7931.748347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.055 0.945 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.099 0.901 7 C -0.162 4.162 8 N -0.717 5.717 9 C 0.516 3.484 10 O -0.536 6.536 11 C -0.136 4.136 12 C -0.025 4.025 13 C -0.006 4.006 14 C -0.210 4.210 15 C -0.212 4.212 16 C -0.051 4.051 17 O -0.178 6.178 18 N -0.745 5.745 19 C -0.238 4.238 20 H 0.088 0.912 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.200 0.800 43 H 0.359 0.641 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 8.365 -17.900 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.117 0.883 7 C -0.220 4.220 8 N -0.368 5.368 9 C 0.302 3.698 10 O -0.413 6.413 11 C -0.176 4.176 12 C -0.063 4.063 13 C -0.056 4.056 14 C -0.229 4.229 15 C -0.231 4.231 16 C -0.119 4.119 17 O -0.074 6.074 18 N -0.389 5.389 19 C -0.368 4.368 20 H 0.105 0.895 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.204 1.204 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.217 0.783 43 H 0.192 0.808 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.922 7.794 -17.586 20.127 hybrid contribution -0.128 -0.670 0.113 0.692 sum 5.794 7.123 -17.473 19.739 Atomic orbital electron populations 1.22427 0.99060 1.00813 1.00301 1.20192 0.91701 0.95835 0.85525 0.92736 1.22218 0.93888 1.02102 0.99125 1.20990 0.94950 0.80708 0.99561 0.88283 1.22192 1.01634 1.00015 0.98159 1.45944 1.16618 1.11422 1.62850 1.20403 0.81881 0.89866 0.77608 1.90722 1.51127 1.56697 1.42731 1.21642 0.97855 0.94666 1.03472 1.19871 0.95528 0.86517 1.04347 1.22537 0.99903 0.96681 0.86455 1.21712 1.06931 0.92203 1.02046 1.21857 1.04886 1.00069 0.96281 1.23979 1.05861 0.82300 0.99717 1.84014 1.60895 1.22575 1.39941 1.42777 1.79677 1.09232 1.07176 1.19001 1.36779 0.95334 0.85713 0.89460 1.24630 1.01393 0.97358 0.95581 1.69696 1.52824 1.35536 1.00258 0.86603 0.78687 0.86938 0.76651 1.20909 1.21898 1.20405 0.92435 0.94382 0.93667 0.91567 0.90810 0.92954 0.92417 0.91919 0.77066 0.88244 0.88958 0.87599 0.89402 0.83178 0.83570 0.78340 0.80778 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.49 37.16 0.35 -2.40 16 2 C 0.18 3.16 2.84 -67.93 -0.19 2.96 16 3 H 0.05 1.01 7.56 -51.93 -0.39 0.61 16 4 C -0.13 -1.88 4.29 -26.73 -0.11 -1.99 16 5 C 0.14 2.13 2.52 -67.93 -0.17 1.96 16 6 H 0.10 1.94 7.06 -51.93 -0.37 1.57 16 7 C -0.16 -2.04 9.48 37.16 0.35 -1.69 16 8 N -0.72 -9.65 4.45 -53.81 -0.24 -9.89 16 9 C 0.52 7.85 7.79 -10.98 -0.09 7.77 16 10 O -0.54 -10.52 15.64 5.56 0.09 -10.43 16 11 C -0.14 -1.57 5.68 -27.88 -0.16 -1.73 16 12 C -0.03 -0.31 5.04 -27.88 -0.14 -0.45 16 13 C -0.01 -0.07 6.57 -35.62 -0.23 -0.30 16 14 C -0.21 -2.50 10.81 -39.70 -0.43 -2.93 16 15 C -0.21 -2.18 10.91 -39.70 -0.43 -2.61 16 16 C -0.05 -0.49 12.09 29.42 0.36 -0.13 16 17 O -0.18 -2.13 10.65 5.71 0.06 -2.06 16 18 N -0.75 -17.16 4.30 -53.42 -0.23 -17.39 16 19 C -0.24 -6.67 10.41 -15.06 -0.16 -6.82 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.94 -29.71 13.97 55.49 0.78 -28.94 16 23 Si 0.88 22.66 27.73 -169.99 -4.71 17.95 16 24 H -0.28 -7.39 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 4.11 8.60 -40.82 -0.35 3.76 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 1.45 8.10 -51.93 -0.42 1.02 16 39 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.36 8.30 5.66 -40.82 -0.23 8.07 16 44 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -34.86 367.94 -7.14 -41.99 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.27 Total: 11.54 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.15 Total: -8.31 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.31 Total: -56.22 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.15 Total: -12.50 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.95 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.86 -7.14 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133641034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.413 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds