Wall clock time and date at job start Tue Mar 31 2020 07:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47001 * 2 1 4 4 C 1.53003 * 109.47229 * 240.00196 * 2 1 3 5 5 C 1.52997 * 109.47310 * 174.99741 * 4 2 1 6 6 H 1.09005 * 109.47168 * 55.00243 * 5 4 2 7 7 C 1.53002 * 109.47248 * 175.00057 * 5 4 2 8 8 N 1.46496 * 109.47387 * 295.00044 * 5 4 2 9 9 C 1.34777 * 120.00271 * 154.99671 * 8 5 4 10 10 O 1.21278 * 119.99854 * 0.02562 * 9 8 5 11 11 C 1.50703 * 120.00161 * 180.02562 * 9 8 5 12 12 C 1.53000 * 109.46912 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 9 14 14 C 1.34505 * 125.79145 * 89.99935 * 13 12 11 15 15 C 1.41385 * 106.84433 * 179.97438 * 14 13 12 16 16 C 1.34520 * 106.83707 * 0.02562 * 15 14 13 17 17 O 1.34302 * 108.41864 * 359.73604 * 16 15 14 18 18 N 1.46503 * 109.47585 * 120.00250 * 2 1 3 19 19 C 1.36935 * 119.99747 * 275.00283 * 18 2 1 20 20 H 1.07996 * 120.00552 * 359.97438 * 19 18 2 21 21 C 1.38820 * 119.99726 * 179.97438 * 19 18 2 22 22 N 1.31614 * 119.99700 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00029 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47219 * 90.00153 * 23 21 19 25 25 H 1.48497 * 109.47171 * 210.00371 * 23 21 19 26 26 H 1.48503 * 109.47292 * 330.00448 * 23 21 19 27 27 H 1.09001 * 109.46986 * 299.99602 * 1 2 3 28 28 H 1.08991 * 109.47203 * 59.99791 * 1 2 3 29 29 H 1.09004 * 109.47001 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46872 * 54.99847 * 4 2 1 31 31 H 1.09001 * 109.47075 * 295.00260 * 4 2 1 32 32 H 1.09005 * 109.46885 * 60.00012 * 7 5 4 33 33 H 1.08991 * 109.47341 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46953 * 300.00221 * 7 5 4 35 35 H 0.97005 * 120.00266 * 335.00254 * 8 5 4 36 36 H 1.09002 * 109.47152 * 60.00245 * 11 9 8 37 37 H 1.09001 * 109.46980 * 300.00345 * 11 9 8 38 38 H 1.09001 * 109.47194 * 299.99742 * 12 11 9 39 39 H 1.08992 * 109.47399 * 59.99914 * 12 11 9 40 40 H 1.08006 * 126.58228 * 0.03440 * 14 13 12 41 41 H 1.07993 * 126.58507 * 179.97438 * 15 14 13 42 42 H 1.07994 * 125.78959 * 180.02562 * 16 15 14 43 43 H 0.96996 * 120.00099 * 94.99514 * 18 2 1 44 44 H 0.97006 * 119.99792 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9954 -0.9922 -0.3869 7 6 4.0851 -1.4382 -2.4926 8 7 3.9479 0.7894 -1.4925 9 6 5.1611 1.2136 -1.0867 10 8 5.9359 0.4340 -0.5741 11 6 5.5550 2.6567 -1.2701 12 6 6.9703 2.8716 -0.7299 13 6 7.3639 4.3148 -0.9127 14 6 7.1584 5.3046 -0.0255 15 6 7.6811 6.4856 -0.6009 16 6 8.1743 6.1468 -1.8057 17 8 7.9843 4.8296 -1.9868 18 7 2.0184 -0.6907 1.1961 19 6 2.1492 -0.0075 2.3757 20 1 1.8927 1.0404 2.4242 21 6 2.6115 -0.6621 3.5092 22 7 2.7367 -0.0057 4.6431 23 14 3.0546 -2.4749 3.4256 24 1 4.4872 -2.6180 3.0617 25 1 2.8146 -3.1047 4.7488 26 1 2.2142 -3.1430 2.3996 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -0.2616 -2.1370 31 1 1.7516 -1.7715 -1.2057 32 1 3.6545 -1.0591 -3.4195 33 1 5.1713 -1.3609 -2.5388 34 1 3.8001 -2.4818 -2.3596 35 1 3.3284 1.4130 -1.9028 36 1 4.8578 3.2953 -0.7277 37 1 5.5290 2.9085 -2.3303 38 1 6.9967 2.6196 0.3303 39 1 7.6672 2.2330 -1.2725 40 1 6.6857 5.2145 0.9414 41 1 7.6832 7.4708 -0.1586 42 1 8.6474 6.8189 -2.5062 43 1 2.2491 -1.6318 1.1525 44 1 3.0594 -0.4632 5.4353 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133641034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:33 Heat of formation + Delta-G solvation = -50.393318 kcal Electronic energy + Delta-G solvation = -23762.194110 eV Core-core repulsion = 20294.115541 eV Total energy + Delta-G solvation = -3468.078568 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.47433 -40.87031 -38.47763 -36.15337 -35.03332 -34.07146 -33.70636 -32.21615 -30.98197 -29.58278 -27.59789 -25.69050 -25.27731 -22.66048 -22.45115 -21.63858 -21.23511 -21.12759 -19.69728 -18.53761 -17.71900 -17.29160 -16.84825 -16.72150 -16.45543 -15.91242 -15.41222 -15.19514 -15.11345 -14.60271 -14.34951 -14.18598 -13.97580 -13.73748 -13.58726 -13.43710 -13.35275 -13.19492 -13.01034 -12.93145 -12.81933 -12.63271 -12.28951 -12.07826 -12.00469 -11.86856 -11.67452 -11.41930 -10.97157 -10.88857 -10.79111 -9.94604 -9.37207 -9.25974 -8.00734 -5.30433 0.79291 1.33245 1.39563 1.43707 1.70477 1.74273 2.03966 2.42114 2.48732 3.32801 3.65467 3.67069 3.85079 3.88161 4.02925 4.10736 4.16292 4.21852 4.34971 4.37407 4.53141 4.57905 4.68664 4.76185 4.78846 4.84279 4.92296 4.95475 4.98900 5.02237 5.08082 5.09103 5.23796 5.25469 5.34623 5.40833 5.61396 5.61835 5.68148 5.81423 6.22506 6.24302 6.67559 7.12218 7.40017 7.91324 8.06606 9.21443 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003958 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.982952 B = 7073.180164 C = 7931.748347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.046 0.954 4 C -0.121 4.121 5 C 0.140 3.860 6 H 0.048 0.952 7 C -0.152 4.152 8 N -0.706 5.706 9 C 0.508 3.492 10 O -0.589 6.589 11 C -0.124 4.124 12 C -0.021 4.021 13 C -0.021 4.021 14 C -0.224 4.224 15 C -0.227 4.227 16 C -0.040 4.040 17 O -0.189 6.189 18 N -0.749 5.749 19 C -0.212 4.212 20 H 0.056 0.944 21 C -0.066 4.066 22 N -0.987 5.987 23 Si 0.945 3.055 24 H -0.292 1.292 25 H -0.297 1.297 26 H -0.247 1.247 27 H 0.025 0.975 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.241 0.759 43 H 0.361 0.639 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 8.546 -21.514 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.064 0.936 4 C -0.159 4.159 5 C 0.035 3.965 6 H 0.066 0.934 7 C -0.210 4.210 8 N -0.358 5.358 9 C 0.296 3.704 10 O -0.469 6.469 11 C -0.164 4.164 12 C -0.058 4.058 13 C -0.071 4.071 14 C -0.243 4.243 15 C -0.246 4.246 16 C -0.106 4.106 17 O -0.086 6.086 18 N -0.393 5.393 19 C -0.344 4.344 20 H 0.074 0.926 21 C -0.257 4.257 22 N -0.638 5.638 23 Si 0.774 3.226 24 H -0.219 1.219 25 H -0.224 1.224 26 H -0.171 1.171 27 H 0.044 0.956 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.164 0.836 41 H 0.185 0.815 42 H 0.257 0.743 43 H 0.194 0.806 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.964 7.987 -21.289 23.274 hybrid contribution 0.136 -0.570 1.164 1.303 sum 5.100 7.417 -20.125 22.046 Atomic orbital electron populations 1.22292 0.97368 1.01278 1.00806 1.20520 0.92747 0.95524 0.85304 0.93637 1.22133 0.92778 1.02573 0.98390 1.20905 0.95608 0.81544 0.98467 0.93405 1.22090 1.00437 1.00273 0.98192 1.45878 1.16392 1.11483 1.62081 1.21053 0.81820 0.90915 0.76644 1.90699 1.52766 1.58326 1.45157 1.21603 0.97222 0.92120 1.05407 1.19700 0.96195 0.87054 1.02894 1.22363 1.01222 0.96384 0.87153 1.21916 1.07119 0.93256 1.02028 1.22163 1.05226 1.00424 0.96797 1.24819 1.04217 0.81566 1.00036 1.84009 1.60959 1.23846 1.39769 1.42846 1.79882 1.09307 1.07248 1.18977 1.33856 0.94152 0.87402 0.92627 1.25387 1.02939 1.01935 0.95465 1.69870 1.55431 1.37423 1.01121 0.85542 0.78096 0.81940 0.77036 1.21886 1.22420 1.17104 0.95576 0.90254 0.93195 0.87108 0.89846 0.89958 0.94348 0.90986 0.74935 0.87443 0.85874 0.89906 0.89987 0.83564 0.81544 0.74275 0.80632 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 9.49 71.98 0.68 -4.11 16 2 C 0.17 5.61 2.84 44.99 0.13 5.74 16 3 H 0.05 1.62 7.56 -2.39 -0.02 1.60 16 4 C -0.12 -2.91 4.29 30.59 0.13 -2.78 16 5 C 0.14 3.94 2.52 44.99 0.11 4.05 16 6 H 0.05 1.88 7.06 -2.38 -0.02 1.86 16 7 C -0.15 -3.44 9.48 71.98 0.68 -2.76 16 8 N -0.71 -17.93 4.45 -442.54 -1.97 -19.90 16 9 C 0.51 15.50 7.79 87.66 0.68 16.18 16 10 O -0.59 -24.13 15.64 -3.02 -0.05 -24.18 16 11 C -0.12 -2.80 5.68 29.85 0.17 -2.63 16 12 C -0.02 -0.53 5.04 29.85 0.15 -0.38 16 13 C -0.02 -0.52 6.57 24.83 0.16 -0.36 16 14 C -0.22 -5.35 10.81 22.19 0.24 -5.11 16 15 C -0.23 -4.33 10.91 22.19 0.24 -4.08 16 16 C -0.04 -0.66 12.09 66.97 0.81 0.15 16 17 O -0.19 -4.26 10.65 -2.49 -0.03 -4.29 16 18 N -0.75 -34.13 4.30 -322.93 -1.39 -35.51 16 19 C -0.21 -12.17 10.41 84.04 0.87 -11.29 16 20 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 21 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 22 N -0.99 -65.26 13.97 21.65 0.30 -64.96 16 23 Si 0.95 47.85 27.73 68.60 1.90 49.76 16 24 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 25 H -0.30 -15.18 7.11 99.48 0.71 -14.48 16 26 H -0.25 -11.05 6.52 99.48 0.65 -10.41 16 27 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.41 7.36 8.60 -92.70 -0.80 6.57 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.12 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.08 2.48 8.10 -2.39 -0.02 2.46 16 39 H 0.08 2.16 8.10 -2.39 -0.02 2.14 16 40 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.24 1.70 8.06 -2.91 -0.02 1.67 16 43 H 0.36 16.22 5.66 -92.71 -0.52 15.69 16 44 H 0.25 16.15 8.31 -92.70 -0.77 15.38 16 Total: -1.00 -80.73 367.94 3.92 -76.81 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.39 Total: 33.23 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 5.54 Total: -10.95 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -3.05 Total: -120.38 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.07 Total: -28.47 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.90 Total: 49.76 kcal Total: -80.73 3.92 -76.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133641034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.418 kcal (2) G-P(sol) polarization free energy of solvation -80.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds