Wall clock time and date at job start Tue Mar 31 2020 07:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47358 * 2 1 4 4 C 1.53003 * 109.46958 * 240.00129 * 2 1 3 5 5 C 1.52993 * 109.47137 * 175.01165 * 4 2 1 6 6 H 1.09005 * 109.47127 * 306.63778 * 5 4 2 7 7 C 1.53002 * 109.47354 * 186.64012 * 5 4 2 8 8 N 1.46499 * 109.47096 * 66.64040 * 5 4 2 9 9 C 1.34781 * 120.00148 * 208.54069 * 8 5 4 10 10 O 1.21284 * 119.99775 * 5.03142 * 9 8 5 11 11 C 1.50698 * 119.99951 * 185.03430 * 9 8 5 12 12 C 1.53001 * 109.46792 * 174.38573 * 11 9 8 13 13 C 1.50700 * 109.47143 * 180.02562 * 12 11 9 14 14 C 1.41384 * 126.57912 * 89.99922 * 13 12 11 15 15 C 1.34515 * 106.83715 * 180.02562 * 14 13 12 16 16 O 1.34296 * 108.42557 * 359.97438 * 15 14 13 17 17 C 1.34304 * 109.47740 * 0.02562 * 16 15 14 18 18 N 1.46495 * 109.47107 * 120.00623 * 2 1 3 19 19 C 1.36936 * 119.99955 * 274.46202 * 18 2 1 20 20 H 1.08000 * 120.00139 * 352.95567 * 19 18 2 21 21 C 1.38814 * 120.00221 * 172.95696 * 19 18 2 22 22 N 1.31619 * 119.99796 * 179.26556 * 21 19 18 23 23 Si 1.86794 * 119.99898 * 359.26887 * 21 19 18 24 24 H 1.48502 * 109.47509 * 88.84937 * 23 21 19 25 25 H 1.48503 * 109.47302 * 208.85104 * 23 21 19 26 26 H 1.48503 * 109.47161 * 328.84549 * 23 21 19 27 27 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46933 * 299.99752 * 1 2 3 29 29 H 1.08995 * 109.47661 * 59.99759 * 1 2 3 30 30 H 1.09006 * 109.46854 * 55.01061 * 4 2 1 31 31 H 1.08998 * 109.47507 * 295.01578 * 4 2 1 32 32 H 1.09005 * 109.46971 * 60.00153 * 7 5 4 33 33 H 1.08996 * 109.47149 * 179.97438 * 7 5 4 34 34 H 1.08996 * 109.46991 * 300.00490 * 7 5 4 35 35 H 0.97002 * 119.99855 * 28.54358 * 8 5 4 36 36 H 1.09002 * 109.47133 * 54.39268 * 11 9 8 37 37 H 1.08998 * 109.47228 * 294.38464 * 11 9 8 38 38 H 1.09003 * 109.47215 * 60.00277 * 12 11 9 39 39 H 1.09004 * 109.47542 * 299.99913 * 12 11 9 40 40 H 1.07993 * 126.57833 * 0.26273 * 14 13 12 41 41 H 1.08004 * 125.78806 * 179.97438 * 15 14 13 42 42 H 1.07998 * 125.79301 * 179.97438 * 17 16 15 43 43 H 0.97005 * 120.00555 * 94.46280 * 18 2 1 44 44 H 0.97001 * 119.99423 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5647 -0.6136 -1.3136 6 1 3.8585 0.4335 -1.2383 7 6 4.0611 -1.1882 -2.6419 8 7 4.1547 -1.3673 -0.2046 9 6 5.3453 -0.9947 0.3055 10 8 5.8851 0.0165 -0.0908 11 6 6.0059 -1.8346 1.3682 12 6 7.3966 -1.2731 1.6707 13 6 8.0574 -2.1133 2.7329 14 6 8.8712 -3.2502 2.5227 15 6 9.2481 -3.6895 3.7369 16 8 8.7094 -2.8832 4.6661 17 6 7.9861 -1.9257 4.0630 18 7 2.0183 -0.6907 1.1960 19 6 2.1595 -0.0051 2.3729 20 1 2.0210 1.0658 2.3940 21 6 2.4807 -0.6864 3.5390 22 7 2.6307 -0.0254 4.6673 23 14 2.7002 -2.5411 3.5066 24 1 4.1146 -2.8669 3.1924 25 1 2.3456 -3.1048 4.8340 26 1 1.8149 -3.1263 2.4679 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6054 -0.2615 -2.1370 31 1 1.7514 -1.7714 -1.2059 32 1 3.6221 -0.6273 -3.4671 33 1 5.1473 -1.1111 -2.6879 34 1 3.7672 -2.2351 -2.7173 35 1 3.6885 -2.1346 0.1626 36 1 6.0978 -2.8616 1.0146 37 1 5.4011 -1.8151 2.2747 38 1 7.3047 -0.2461 2.0243 39 1 8.0015 -1.2925 0.7641 40 1 9.1417 -3.6808 1.5700 41 1 9.8773 -4.5454 3.9317 42 1 7.4397 -1.1386 4.5614 43 1 2.2416 -1.6338 1.1544 44 1 2.8548 -0.5016 5.4821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134055889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:36 Heat of formation + Delta-G solvation = -20.167557 kcal Electronic energy + Delta-G solvation = -24614.581461 eV Core-core repulsion = 21147.813580 eV Total energy + Delta-G solvation = -3466.767881 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.41827 -39.45839 -37.02585 -34.72490 -34.20053 -32.30635 -31.45604 -30.61794 -29.20136 -28.75761 -26.41807 -24.57670 -23.33985 -21.48641 -21.15093 -20.46889 -20.01118 -19.48762 -17.58570 -17.40387 -16.42478 -15.98712 -15.71581 -15.16596 -14.77745 -14.58388 -14.35366 -13.76571 -13.48825 -13.26753 -12.92408 -12.79584 -12.72219 -12.50674 -12.30434 -12.08806 -11.97871 -11.93360 -11.72979 -11.69261 -11.10873 -10.96393 -10.76785 -10.54529 -10.39525 -10.34377 -10.01066 -9.61970 -9.59121 -9.24351 -8.95622 -8.48914 -8.39841 -7.24732 -5.77970 -3.12485 1.88589 2.68814 3.19252 3.24450 3.26872 3.29397 3.39487 3.71893 4.52696 4.87296 4.94559 5.01478 5.15408 5.25796 5.31831 5.39265 5.47618 5.50310 5.52737 5.57222 5.73808 5.81262 5.86452 5.88892 5.90861 6.01636 6.05907 6.15656 6.24856 6.26090 6.34558 6.39014 6.41601 6.45202 6.49639 6.64784 6.80147 6.98467 7.04813 7.23991 7.98374 8.01882 8.40595 8.77892 9.18554 9.90341 10.11037 11.40813 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.005772 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.834301 B = 4849.709323 C = 6270.889778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.056 0.944 4 C -0.136 4.136 5 C 0.147 3.853 6 H 0.090 0.910 7 C -0.161 4.161 8 N -0.708 5.708 9 C 0.529 3.471 10 O -0.552 6.552 11 C -0.145 4.145 12 C -0.030 4.030 13 C -0.178 4.178 14 C -0.208 4.208 15 C -0.052 4.052 16 O -0.179 6.179 17 C -0.033 4.033 18 N -0.740 5.740 19 C -0.231 4.231 20 H 0.088 0.912 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.863 3.137 24 H -0.273 1.273 25 H -0.292 1.292 26 H -0.278 1.278 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.198 0.802 42 H 0.205 0.795 43 H 0.353 0.647 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.456 -7.676 -9.610 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.074 0.926 4 C -0.175 4.175 5 C 0.042 3.958 6 H 0.108 0.892 7 C -0.220 4.220 8 N -0.359 5.359 9 C 0.316 3.684 10 O -0.430 6.430 11 C -0.185 4.185 12 C -0.068 4.068 13 C -0.179 4.179 14 C -0.227 4.227 15 C -0.120 4.120 16 O -0.075 6.075 17 C -0.101 4.101 18 N -0.383 5.383 19 C -0.362 4.362 20 H 0.106 0.894 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.694 3.306 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.204 1.204 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.163 0.837 41 H 0.215 0.785 42 H 0.222 0.778 43 H 0.186 0.814 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.876 -6.805 -9.422 14.040 hybrid contribution -0.278 -1.880 0.213 1.913 sum 7.598 -8.685 -9.209 14.764 Atomic orbital electron populations 1.22405 0.98955 1.00662 1.00449 1.20245 0.91685 0.95983 0.85442 0.92566 1.22246 0.94187 1.01426 0.99597 1.20847 0.92449 0.97498 0.85024 0.89184 1.22208 1.01605 1.00890 0.97274 1.45928 1.20947 1.33114 1.35896 1.20391 0.80891 0.85346 0.81743 1.90627 1.64819 1.25720 1.61880 1.21833 0.97418 0.99336 0.99887 1.19647 0.93171 0.98028 0.95941 1.20534 1.03211 0.99342 0.94854 1.21737 1.03330 0.98956 0.98720 1.23941 1.03009 0.98087 0.86942 1.84063 1.52024 1.34216 1.37171 1.24091 0.99001 0.94481 0.92482 1.42755 1.79431 1.08581 1.07579 1.19060 1.39472 0.93298 0.84329 0.89389 1.24638 1.02481 0.96531 0.95358 1.69687 1.55216 1.34245 0.98954 0.86955 0.78159 0.88191 0.77272 1.20033 1.21895 1.20412 0.93823 0.92379 0.94283 0.90497 0.91994 0.91971 0.92567 0.92905 0.77198 0.89933 0.87584 0.89951 0.90793 0.83730 0.78496 0.77834 0.81384 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.50 37.16 0.35 -2.41 16 2 C 0.18 3.16 2.89 -67.93 -0.20 2.97 16 3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 4 C -0.14 -1.91 4.42 -26.73 -0.12 -2.03 16 5 C 0.15 2.20 2.65 -67.93 -0.18 2.02 16 6 H 0.09 1.58 7.40 -51.93 -0.38 1.19 16 7 C -0.16 -1.97 9.51 37.16 0.35 -1.62 16 8 N -0.71 -11.69 3.67 -53.81 -0.20 -11.89 16 9 C 0.53 9.74 7.81 -10.98 -0.09 9.65 16 10 O -0.55 -11.65 15.56 5.55 0.09 -11.57 16 11 C -0.14 -2.43 5.68 -27.88 -0.16 -2.59 16 12 C -0.03 -0.47 5.04 -27.88 -0.14 -0.61 16 13 C -0.18 -2.67 5.42 -104.74 -0.57 -3.24 16 14 C -0.21 -2.68 10.87 -39.70 -0.43 -3.11 16 15 C -0.05 -0.62 12.09 29.42 0.36 -0.27 16 16 O -0.18 -2.58 10.65 5.72 0.06 -2.51 16 17 C -0.03 -0.50 12.01 29.42 0.35 -0.14 16 18 N -0.74 -16.02 3.66 -53.43 -0.20 -16.22 16 19 C -0.23 -6.19 10.41 -15.06 -0.16 -6.35 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -28.32 13.97 55.49 0.78 -27.54 16 23 Si 0.86 20.37 27.21 -169.99 -4.63 15.75 16 24 H -0.27 -5.97 5.42 56.52 0.31 -5.66 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.21 6.70 56.52 0.38 -5.84 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.39 6.24 6.90 -40.82 -0.28 5.95 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.11 2.05 5.95 -51.93 -0.31 1.74 16 38 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 41 H 0.20 1.51 8.06 -52.48 -0.42 1.08 16 42 H 0.21 2.82 8.06 -52.49 -0.42 2.39 16 43 H 0.35 7.35 3.89 -40.82 -0.16 7.19 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -32.23 359.96 -6.53 -38.76 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -7.14 Total: 17.46 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.72 Total: -7.67 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.38 Total: -55.65 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.15 Total: -14.08 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.63 Total: 15.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.23 -6.53 -38.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134055889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.595 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds