Wall clock time and date at job start Tue Mar 31 2020 07:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47358 * 2 1 4 4 C 1.53003 * 109.46958 * 240.00129 * 2 1 3 5 5 C 1.52993 * 109.47137 * 175.01165 * 4 2 1 6 6 H 1.09005 * 109.47127 * 306.63778 * 5 4 2 7 7 C 1.53002 * 109.47354 * 186.64012 * 5 4 2 8 8 N 1.46499 * 109.47096 * 66.64040 * 5 4 2 9 9 C 1.34781 * 120.00148 * 208.54069 * 8 5 4 10 10 O 1.21284 * 119.99775 * 5.03142 * 9 8 5 11 11 C 1.50698 * 119.99951 * 185.03430 * 9 8 5 12 12 C 1.53001 * 109.46792 * 174.38573 * 11 9 8 13 13 C 1.50700 * 109.47143 * 180.02562 * 12 11 9 14 14 C 1.41384 * 126.57912 * 89.99922 * 13 12 11 15 15 C 1.34515 * 106.83715 * 180.02562 * 14 13 12 16 16 O 1.34296 * 108.42557 * 359.97438 * 15 14 13 17 17 C 1.34304 * 109.47740 * 0.02562 * 16 15 14 18 18 N 1.46495 * 109.47107 * 120.00623 * 2 1 3 19 19 C 1.36936 * 119.99955 * 274.46202 * 18 2 1 20 20 H 1.08000 * 120.00139 * 352.95567 * 19 18 2 21 21 C 1.38814 * 120.00221 * 172.95696 * 19 18 2 22 22 N 1.31619 * 119.99796 * 179.26556 * 21 19 18 23 23 Si 1.86794 * 119.99898 * 359.26887 * 21 19 18 24 24 H 1.48502 * 109.47509 * 88.84937 * 23 21 19 25 25 H 1.48503 * 109.47302 * 208.85104 * 23 21 19 26 26 H 1.48503 * 109.47161 * 328.84549 * 23 21 19 27 27 H 1.09005 * 109.47099 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46933 * 299.99752 * 1 2 3 29 29 H 1.08995 * 109.47661 * 59.99759 * 1 2 3 30 30 H 1.09006 * 109.46854 * 55.01061 * 4 2 1 31 31 H 1.08998 * 109.47507 * 295.01578 * 4 2 1 32 32 H 1.09005 * 109.46971 * 60.00153 * 7 5 4 33 33 H 1.08996 * 109.47149 * 179.97438 * 7 5 4 34 34 H 1.08996 * 109.46991 * 300.00490 * 7 5 4 35 35 H 0.97002 * 119.99855 * 28.54358 * 8 5 4 36 36 H 1.09002 * 109.47133 * 54.39268 * 11 9 8 37 37 H 1.08998 * 109.47228 * 294.38464 * 11 9 8 38 38 H 1.09003 * 109.47215 * 60.00277 * 12 11 9 39 39 H 1.09004 * 109.47542 * 299.99913 * 12 11 9 40 40 H 1.07993 * 126.57833 * 0.26273 * 14 13 12 41 41 H 1.08004 * 125.78806 * 179.97438 * 15 14 13 42 42 H 1.07998 * 125.79301 * 179.97438 * 17 16 15 43 43 H 0.97005 * 120.00555 * 94.46280 * 18 2 1 44 44 H 0.97001 * 119.99423 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5647 -0.6136 -1.3136 6 1 3.8585 0.4335 -1.2383 7 6 4.0611 -1.1882 -2.6419 8 7 4.1547 -1.3673 -0.2046 9 6 5.3453 -0.9947 0.3055 10 8 5.8851 0.0165 -0.0908 11 6 6.0059 -1.8346 1.3682 12 6 7.3966 -1.2731 1.6707 13 6 8.0574 -2.1133 2.7329 14 6 8.8712 -3.2502 2.5227 15 6 9.2481 -3.6895 3.7369 16 8 8.7094 -2.8832 4.6661 17 6 7.9861 -1.9257 4.0630 18 7 2.0183 -0.6907 1.1960 19 6 2.1595 -0.0051 2.3729 20 1 2.0210 1.0658 2.3940 21 6 2.4807 -0.6864 3.5390 22 7 2.6307 -0.0254 4.6673 23 14 2.7002 -2.5411 3.5066 24 1 4.1146 -2.8669 3.1924 25 1 2.3456 -3.1048 4.8340 26 1 1.8149 -3.1263 2.4679 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6054 -0.2615 -2.1370 31 1 1.7514 -1.7714 -1.2059 32 1 3.6221 -0.6273 -3.4671 33 1 5.1473 -1.1111 -2.6879 34 1 3.7672 -2.2351 -2.7173 35 1 3.6885 -2.1346 0.1626 36 1 6.0978 -2.8616 1.0146 37 1 5.4011 -1.8151 2.2747 38 1 7.3047 -0.2461 2.0243 39 1 8.0015 -1.2925 0.7641 40 1 9.1417 -3.6808 1.5700 41 1 9.8773 -4.5454 3.9317 42 1 7.4397 -1.1386 4.5614 43 1 2.2416 -1.6338 1.1544 44 1 2.8548 -0.5016 5.4821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134055889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:35 Heat of formation + Delta-G solvation = -41.048218 kcal Electronic energy + Delta-G solvation = -24615.486915 eV Core-core repulsion = 21147.813580 eV Total energy + Delta-G solvation = -3467.673334 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.46615 -40.86946 -38.49895 -36.09663 -35.63519 -34.11377 -32.81759 -31.95571 -30.76391 -29.91409 -27.60718 -25.84538 -25.29934 -22.48062 -22.42002 -21.91697 -21.21059 -20.89415 -19.57953 -18.55917 -17.72512 -17.30450 -16.83755 -16.57919 -16.51607 -16.03132 -15.61614 -15.09355 -14.99759 -14.68028 -14.41355 -14.22887 -14.09187 -13.68480 -13.67159 -13.41917 -13.24618 -13.17683 -12.99036 -12.84339 -12.62118 -12.50676 -12.31947 -12.08377 -11.89983 -11.79623 -11.63212 -11.45412 -10.94596 -10.80441 -10.51908 -9.90722 -9.46484 -9.17785 -7.95621 -5.27527 0.84282 1.32310 1.40666 1.47834 1.63693 1.78679 2.27280 2.43521 2.51344 3.35879 3.60947 3.79165 3.85207 3.87298 4.01067 4.13121 4.18442 4.29742 4.34278 4.36477 4.55797 4.62424 4.67978 4.79521 4.80820 4.82721 4.85260 4.91511 5.05451 5.07317 5.08429 5.16159 5.21756 5.29816 5.36517 5.38811 5.58715 5.59582 5.74665 5.85289 6.19844 6.26735 6.64160 7.15075 7.38069 7.89819 8.10914 9.26712 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.005772 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.834301 B = 4849.709323 C = 6270.889778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.166 3.834 3 H 0.028 0.972 4 C -0.121 4.121 5 C 0.141 3.859 6 H 0.057 0.943 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.521 3.479 10 O -0.588 6.588 11 C -0.139 4.139 12 C -0.023 4.023 13 C -0.189 4.189 14 C -0.220 4.220 15 C -0.039 4.039 16 O -0.191 6.191 17 C -0.059 4.059 18 N -0.737 5.737 19 C -0.216 4.216 20 H 0.041 0.959 21 C -0.062 4.062 22 N -0.987 5.987 23 Si 0.930 3.070 24 H -0.247 1.247 25 H -0.311 1.311 26 H -0.248 1.248 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.399 0.601 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.169 0.831 41 H 0.242 0.758 42 H 0.200 0.800 43 H 0.362 0.638 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.560 -11.205 -12.312 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.058 3.942 3 H 0.046 0.954 4 C -0.160 4.160 5 C 0.037 3.963 6 H 0.075 0.925 7 C -0.208 4.208 8 N -0.353 5.353 9 C 0.309 3.691 10 O -0.469 6.469 11 C -0.178 4.178 12 C -0.061 4.061 13 C -0.190 4.190 14 C -0.239 4.239 15 C -0.106 4.106 16 O -0.087 6.087 17 C -0.126 4.126 18 N -0.382 5.382 19 C -0.347 4.347 20 H 0.059 0.941 21 C -0.252 4.252 22 N -0.638 5.638 23 Si 0.757 3.243 24 H -0.172 1.172 25 H -0.239 1.239 26 H -0.173 1.173 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.186 0.814 41 H 0.259 0.741 42 H 0.217 0.783 43 H 0.196 0.804 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.946 -10.347 -12.205 17.865 hybrid contribution -0.330 -0.647 1.015 1.248 sum 7.616 -10.995 -11.190 17.438 Atomic orbital electron populations 1.22271 0.97356 1.01410 1.00546 1.20485 0.92775 0.94985 0.85951 0.95351 1.22170 0.93088 1.02366 0.98338 1.20985 0.93286 0.95907 0.86130 0.92497 1.22094 1.00655 1.02259 0.95774 1.45984 1.20277 1.33074 1.35993 1.20732 0.81411 0.85056 0.81908 1.90609 1.65875 1.27205 1.63213 1.21797 0.97096 1.00796 0.98151 1.19515 0.93189 0.96850 0.96561 1.20600 1.03787 1.00201 0.94404 1.22020 1.03214 0.98346 1.00308 1.24841 1.01685 0.97926 0.86149 1.84066 1.52152 1.34412 1.38035 1.24142 1.00228 0.95360 0.92894 1.42658 1.79687 1.08796 1.07033 1.18876 1.37841 0.91560 0.86428 0.94122 1.25426 1.02997 1.02126 0.94692 1.69908 1.57488 1.36570 0.99852 0.85870 0.80062 0.81322 0.77023 1.17181 1.23873 1.17259 0.92635 0.95696 0.90849 0.87000 0.89779 0.89750 0.94082 0.90820 0.76505 0.86877 0.90066 0.92586 0.89981 0.81369 0.74147 0.78307 0.80383 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.50 71.98 0.68 -4.24 16 2 C 0.17 5.79 2.89 44.99 0.13 5.92 16 3 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 4 C -0.12 -2.97 4.42 30.59 0.14 -2.84 16 5 C 0.14 3.96 2.65 44.99 0.12 4.08 16 6 H 0.06 1.99 7.40 -2.38 -0.02 1.98 16 7 C -0.15 -3.14 9.51 71.98 0.68 -2.46 16 8 N -0.70 -22.07 3.67 -442.53 -1.62 -23.69 16 9 C 0.52 19.07 7.81 87.66 0.68 19.76 16 10 O -0.59 -25.46 15.56 -3.04 -0.05 -25.51 16 11 C -0.14 -4.55 5.68 29.85 0.17 -4.38 16 12 C -0.02 -0.74 5.04 29.85 0.15 -0.59 16 13 C -0.19 -5.55 5.42 -19.94 -0.11 -5.66 16 14 C -0.22 -5.11 10.87 22.19 0.24 -4.87 16 15 C -0.04 -0.82 12.09 66.97 0.81 -0.01 16 16 O -0.19 -5.28 10.65 -2.43 -0.03 -5.30 16 17 C -0.06 -1.79 12.01 66.97 0.80 -0.99 16 18 N -0.74 -31.54 3.66 -322.95 -1.18 -32.72 16 19 C -0.22 -11.96 10.41 84.03 0.88 -11.09 16 20 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 21 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 22 N -0.99 -62.88 13.97 21.65 0.30 -62.58 16 23 Si 0.93 42.09 27.21 68.60 1.87 43.96 16 24 H -0.25 -10.04 5.42 99.48 0.54 -9.50 16 25 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 26 H -0.25 -9.93 6.70 99.48 0.67 -9.26 16 27 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.40 11.48 6.90 -92.71 -0.64 10.85 16 36 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.08 3.11 5.95 -2.39 -0.01 3.09 16 38 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 39 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 40 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 41 H 0.24 2.58 8.06 -2.91 -0.02 2.56 16 42 H 0.20 5.94 8.06 -2.91 -0.02 5.92 16 43 H 0.36 14.23 3.89 -92.70 -0.36 13.86 16 44 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -75.54 359.96 4.92 -70.62 By element: Atomic # 1 Polarization: 45.87 SS G_CDS: -0.22 Total: 45.65 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.85 Total: -10.42 kcal Atomic # 7 Polarization: -116.49 SS G_CDS: -2.50 Total: -118.99 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.07 Total: -30.81 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 1.87 Total: 43.96 kcal Total: -75.54 4.92 -70.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134055889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.567 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds