Wall clock time and date at job start Tue Mar 31 2020 07:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.52996 * 109.46829 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47210 * 179.97438 * 12 11 9 14 14 C 1.41387 * 126.57726 * 89.99908 * 13 12 11 15 15 C 1.34519 * 106.84164 * 179.97438 * 14 13 12 16 16 O 1.34308 * 108.41737 * 359.97438 * 15 14 13 17 17 C 1.34307 * 109.47622 * 359.77294 * 16 15 14 18 18 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 19 19 C 1.36943 * 119.99752 * 84.72207 * 18 2 1 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 2 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 2 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48496 * 109.47166 * 329.99846 * 23 21 19 27 27 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 31 31 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 32 32 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 33 33 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 35 35 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 36 36 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 37 37 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 38 38 H 1.09001 * 109.47479 * 299.99853 * 12 11 9 39 39 H 1.09000 * 109.47204 * 60.00187 * 12 11 9 40 40 H 1.07998 * 126.58110 * 359.93134 * 14 13 12 41 41 H 1.07998 * 125.79061 * 179.97438 * 15 14 13 42 42 H 1.08001 * 125.78563 * 180.23989 * 17 16 15 43 43 H 0.97001 * 120.00384 * 265.00562 * 18 2 1 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8717 0.7288 13 6 7.3635 4.3149 0.9116 14 6 8.0122 4.8753 2.0360 15 6 8.1721 6.1863 1.7804 16 8 7.6580 6.4479 0.5675 17 6 7.1711 5.3157 0.0338 18 7 2.0184 -0.6906 -1.1962 19 6 2.1437 -0.0088 -2.3771 20 1 1.8868 1.0391 -2.4256 21 6 2.6010 -0.6645 -3.5120 22 7 2.9136 -1.9417 -3.4530 23 14 2.7727 0.2657 -5.1227 24 1 4.1349 0.8499 -5.2142 25 1 2.5567 -0.6666 -6.2582 26 1 1.7630 1.3533 -5.1763 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2056 32 1 3.8001 -2.4820 2.3594 33 1 5.1714 -1.3611 2.5385 34 1 3.6547 -1.0595 3.4193 35 1 3.3285 1.4128 1.9028 36 1 4.8579 3.2952 0.7277 37 1 5.5291 2.9083 2.3303 38 1 7.6673 2.2330 1.2707 39 1 6.9953 2.6201 -0.3314 40 1 8.3197 4.3515 2.9290 41 1 8.6352 6.9062 2.4388 42 1 6.7020 5.2248 -0.9348 43 1 2.2490 -1.6318 -1.1527 44 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134055891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:42 Heat of formation + Delta-G solvation = -31.385434 kcal Electronic energy + Delta-G solvation = -23684.994079 eV Core-core repulsion = 20217.739754 eV Total energy + Delta-G solvation = -3467.254325 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.64764 -39.52035 -36.89223 -34.88961 -34.31952 -32.16900 -31.61110 -30.50176 -29.06673 -28.55188 -26.29652 -24.77984 -23.56841 -21.70822 -21.21727 -20.33171 -19.93766 -19.65913 -17.64190 -17.21520 -16.55584 -16.04015 -15.76121 -15.37738 -14.79150 -14.68149 -13.96154 -13.83733 -13.73692 -13.39990 -12.98077 -12.92049 -12.74504 -12.44077 -12.26898 -12.08189 -11.98559 -11.82282 -11.70535 -11.54383 -11.00930 -10.88800 -10.79427 -10.58401 -10.37728 -10.19660 -9.86180 -9.82927 -9.58668 -9.38338 -8.84667 -8.64114 -8.61498 -6.88565 -5.69831 -2.97672 1.65158 2.46472 3.03679 3.05984 3.47390 3.51721 3.53754 3.58134 4.64820 4.66938 4.75465 4.91946 5.11078 5.15430 5.21035 5.30429 5.45833 5.52274 5.61271 5.64997 5.65981 5.70448 5.74411 5.93391 5.98209 5.98672 6.04953 6.15253 6.17362 6.20032 6.32530 6.39638 6.42886 6.47621 6.60587 6.77607 6.87036 6.99316 7.00705 7.10435 7.74826 7.89646 8.48629 8.65803 9.59787 10.17655 10.51776 11.53023 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004177 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.358485 B = 6702.177502 C = 8135.358903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.045 0.955 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.105 0.895 7 C -0.160 4.160 8 N -0.718 5.718 9 C 0.512 3.488 10 O -0.535 6.535 11 C -0.133 4.133 12 C -0.036 4.036 13 C -0.175 4.175 14 C -0.208 4.208 15 C -0.048 4.048 16 O -0.180 6.180 17 C -0.039 4.039 18 N -0.720 5.720 19 C -0.234 4.234 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.902 3.098 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.393 0.607 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.146 0.854 41 H 0.199 0.801 42 H 0.203 0.797 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.217 12.329 15.517 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.062 3.938 3 H 0.063 0.937 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.123 0.877 7 C -0.218 4.218 8 N -0.369 5.369 9 C 0.298 3.702 10 O -0.412 6.412 11 C -0.173 4.173 12 C -0.074 4.074 13 C -0.177 4.177 14 C -0.227 4.227 15 C -0.116 4.116 16 O -0.075 6.075 17 C -0.107 4.107 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.085 0.915 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.734 3.266 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.209 1.209 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.226 0.774 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.164 0.836 41 H 0.216 0.784 42 H 0.220 0.780 43 H 0.216 0.784 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.783 12.143 14.854 20.038 hybrid contribution -0.248 0.290 -0.594 0.706 sum 5.535 12.433 14.260 19.712 Atomic orbital electron populations 1.22462 0.99624 1.00777 0.99719 1.20213 0.91470 0.95533 0.86579 0.93665 1.22160 0.93890 1.02122 0.98740 1.21008 0.94954 0.80433 0.99748 0.87730 1.22176 1.01447 1.00167 0.98059 1.45995 1.16590 1.11526 1.62829 1.20533 0.81881 0.90089 0.77714 1.90721 1.51113 1.56742 1.42583 1.21624 0.98397 0.94144 1.03125 1.19701 0.94924 0.89725 1.03031 1.20547 1.04657 0.97172 0.95287 1.21781 1.05588 0.94565 1.00813 1.23986 1.03392 0.97591 0.86620 1.84068 1.59499 1.35181 1.28790 1.24003 1.03413 0.82870 1.00404 1.42398 1.77981 1.10625 1.05198 1.19151 1.36537 0.93634 0.87228 0.91545 1.24691 1.02269 0.95913 0.97904 1.69649 1.51048 1.08569 1.28715 0.86262 0.77727 0.78613 0.84030 1.21791 1.21847 1.20924 0.93559 0.94758 0.92938 0.92148 0.90747 0.91851 0.92602 0.93261 0.77364 0.89006 0.89367 0.90295 0.89994 0.83591 0.78385 0.78028 0.78359 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.25 2.84 -67.93 -0.19 3.06 16 3 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16 4 C -0.13 -1.99 4.29 -26.73 -0.11 -2.11 16 5 C 0.14 2.32 2.52 -67.93 -0.17 2.15 16 6 H 0.10 2.25 7.05 -51.93 -0.37 1.88 16 7 C -0.16 -2.22 9.48 37.16 0.35 -1.87 16 8 N -0.72 -10.32 4.45 -53.80 -0.24 -10.56 16 9 C 0.51 8.17 7.79 -10.98 -0.09 8.09 16 10 O -0.54 -11.07 15.64 5.56 0.09 -10.98 16 11 C -0.13 -1.58 5.68 -27.88 -0.16 -1.73 16 12 C -0.04 -0.45 5.02 -27.89 -0.14 -0.59 16 13 C -0.18 -1.99 5.42 -104.74 -0.57 -2.55 16 14 C -0.21 -2.07 10.87 -39.70 -0.43 -2.50 16 15 C -0.05 -0.43 12.09 29.42 0.36 -0.08 16 16 O -0.18 -1.95 10.65 5.69 0.06 -1.89 16 17 C -0.04 -0.43 12.01 29.41 0.35 -0.07 16 18 N -0.72 -17.71 4.49 -53.43 -0.24 -17.95 16 19 C -0.23 -6.50 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 23 Si 0.90 22.87 29.55 -169.99 -5.02 17.84 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.39 4.43 8.60 -40.82 -0.35 4.08 16 36 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.20 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 44 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -34.14 371.04 -7.04 -41.18 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.31 Total: 12.45 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.69 Total: -7.84 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.25 Total: -56.36 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.15 Total: -12.87 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.14 -7.04 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134055891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.799 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds