Wall clock time and date at job start Tue Mar 31 2020 07:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 C 1.53003 * 109.46807 * 184.99648 * 4 2 1 6 6 H 1.08998 * 109.47461 * 305.00352 * 5 4 2 7 7 C 1.53000 * 109.46994 * 184.99940 * 5 4 2 8 8 N 1.46501 * 109.46925 * 65.00479 * 5 4 2 9 9 C 1.34776 * 119.99862 * 204.99701 * 8 5 4 10 10 O 1.21273 * 120.00156 * 0.02562 * 9 8 5 11 11 C 1.50708 * 119.99804 * 179.97438 * 9 8 5 12 12 C 1.52996 * 109.46829 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47210 * 179.97438 * 12 11 9 14 14 C 1.41387 * 126.57726 * 89.99908 * 13 12 11 15 15 C 1.34519 * 106.84164 * 179.97438 * 14 13 12 16 16 O 1.34308 * 108.41737 * 359.97438 * 15 14 13 17 17 C 1.34307 * 109.47622 * 359.77294 * 16 15 14 18 18 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 19 19 C 1.36943 * 119.99752 * 84.72207 * 18 2 1 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 2 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 2 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47294 * 90.00155 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00015 * 23 21 19 26 26 H 1.48496 * 109.47166 * 329.99846 * 23 21 19 27 27 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 30 30 H 1.08993 * 109.47108 * 304.99684 * 4 2 1 31 31 H 1.08998 * 109.47048 * 65.00196 * 4 2 1 32 32 H 1.09005 * 109.47051 * 60.00231 * 7 5 4 33 33 H 1.08994 * 109.47045 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.47353 * 300.00478 * 7 5 4 35 35 H 0.97000 * 119.99999 * 24.99425 * 8 5 4 36 36 H 1.09005 * 109.46884 * 299.99685 * 11 9 8 37 37 H 1.09000 * 109.47074 * 60.00149 * 11 9 8 38 38 H 1.09001 * 109.47479 * 299.99853 * 12 11 9 39 39 H 1.09000 * 109.47204 * 60.00187 * 12 11 9 40 40 H 1.07998 * 126.58110 * 359.93134 * 14 13 12 41 41 H 1.07998 * 125.79061 * 179.97438 * 15 14 13 42 42 H 1.08001 * 125.78563 * 180.23989 * 17 16 15 43 43 H 0.97001 * 120.00384 * 265.00562 * 18 2 1 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4924 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9355 0.4341 0.5731 11 6 5.5551 2.6566 1.2701 12 6 6.9698 2.8717 0.7288 13 6 7.3635 4.3149 0.9116 14 6 8.0122 4.8753 2.0360 15 6 8.1721 6.1863 1.7804 16 8 7.6580 6.4479 0.5675 17 6 7.1711 5.3157 0.0338 18 7 2.0184 -0.6906 -1.1962 19 6 2.1437 -0.0088 -2.3771 20 1 1.8868 1.0391 -2.4256 21 6 2.6010 -0.6645 -3.5120 22 7 2.9136 -1.9417 -3.4530 23 14 2.7727 0.2657 -5.1227 24 1 4.1349 0.8499 -5.2142 25 1 2.5567 -0.6666 -6.2582 26 1 1.7630 1.3533 -5.1763 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2056 32 1 3.8001 -2.4820 2.3594 33 1 5.1714 -1.3611 2.5385 34 1 3.6547 -1.0595 3.4193 35 1 3.3285 1.4128 1.9028 36 1 4.8579 3.2952 0.7277 37 1 5.5291 2.9083 2.3303 38 1 7.6673 2.2330 1.2707 39 1 6.9953 2.6201 -0.3314 40 1 8.3197 4.3515 2.9290 41 1 8.6352 6.9062 2.4388 42 1 6.7020 5.2248 -0.9348 43 1 2.2490 -1.6318 -1.1527 44 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134055891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:41 Heat of formation + Delta-G solvation = -54.307222 kcal Electronic energy + Delta-G solvation = -23685.988042 eV Core-core repulsion = 20217.739754 eV Total energy + Delta-G solvation = -3468.248288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.41853 -40.81939 -38.36288 -36.13353 -35.66785 -33.99677 -32.70522 -31.65796 -30.42476 -29.87974 -27.58787 -25.87429 -25.57598 -22.48520 -22.41197 -21.51696 -21.13902 -20.93093 -19.27301 -18.49509 -17.70453 -17.18607 -16.79350 -16.67286 -16.37995 -15.67422 -15.52639 -15.47842 -14.98840 -14.62164 -14.50358 -14.16270 -13.64225 -13.59944 -13.51283 -13.30582 -13.20964 -13.03550 -12.95325 -12.86008 -12.78818 -12.63639 -12.22358 -12.17269 -11.88765 -11.80165 -11.54034 -11.39966 -10.91698 -10.83935 -10.49201 -9.90982 -9.41513 -8.93898 -7.91072 -5.16509 0.89592 1.43128 1.45626 1.52708 1.67357 1.80446 2.31613 2.44010 2.57197 3.43630 3.76250 3.87330 3.92083 4.02474 4.03304 4.15547 4.21317 4.36282 4.41004 4.44259 4.57096 4.68048 4.72900 4.80556 4.83567 4.84725 4.87508 4.96631 5.05854 5.11499 5.13167 5.25392 5.26169 5.35490 5.37198 5.45513 5.53669 5.62188 5.64512 5.73792 6.24324 6.32145 6.73219 7.37622 7.46520 8.18298 8.37701 9.32957 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004177 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.358485 B = 6702.177502 C = 8135.358903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.045 0.955 4 C -0.117 4.117 5 C 0.145 3.855 6 H 0.043 0.957 7 C -0.150 4.150 8 N -0.706 5.706 9 C 0.503 3.497 10 O -0.592 6.592 11 C -0.119 4.119 12 C -0.030 4.030 13 C -0.188 4.188 14 C -0.224 4.224 15 C -0.039 4.039 16 O -0.190 6.190 17 C -0.050 4.050 18 N -0.732 5.732 19 C -0.225 4.225 20 H 0.071 0.929 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.962 3.038 24 H -0.295 1.295 25 H -0.297 1.297 26 H -0.266 1.266 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.413 0.587 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.161 0.839 41 H 0.237 0.763 42 H 0.214 0.786 43 H 0.369 0.631 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 14.779 17.999 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.156 4.156 5 C 0.040 3.960 6 H 0.062 0.938 7 C -0.208 4.208 8 N -0.358 5.358 9 C 0.291 3.709 10 O -0.473 6.473 11 C -0.159 4.159 12 C -0.069 4.069 13 C -0.190 4.190 14 C -0.243 4.243 15 C -0.106 4.106 16 O -0.086 6.086 17 C -0.118 4.118 18 N -0.373 5.373 19 C -0.357 4.357 20 H 0.089 0.911 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.792 3.208 24 H -0.223 1.223 25 H -0.224 1.224 26 H -0.191 1.191 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.249 0.751 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.178 0.822 41 H 0.253 0.747 42 H 0.230 0.770 43 H 0.200 0.800 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.641 14.659 17.393 23.215 hybrid contribution 0.079 -0.426 -1.261 1.333 sum 4.721 14.233 16.132 22.025 Atomic orbital electron populations 1.22312 0.97817 1.00779 1.00723 1.20523 0.92541 0.95348 0.85991 0.93694 1.22065 0.92890 1.02057 0.98540 1.20791 0.95478 0.81613 0.98128 0.93822 1.22069 1.00308 1.00151 0.98308 1.45890 1.16515 1.11264 1.62144 1.21312 0.81634 0.91377 0.76560 1.90702 1.52844 1.58570 1.45168 1.21598 0.97951 0.91114 1.05230 1.19542 0.95385 0.90699 1.01225 1.20509 1.05699 0.96297 0.96483 1.22016 1.06032 0.95212 1.01051 1.24737 1.01853 0.98074 0.85944 1.84082 1.59683 1.35161 1.29680 1.24261 1.03684 0.82902 1.00927 1.42623 1.78222 1.10144 1.06267 1.19529 1.34070 0.93834 0.88315 0.91059 1.25446 1.03605 0.96803 1.01239 1.69809 1.53265 1.10143 1.28999 0.85296 0.77591 0.77684 0.80229 1.22266 1.22365 1.19117 0.94076 0.90450 0.95184 0.87509 0.90915 0.91520 0.94458 0.89902 0.75067 0.87674 0.86167 0.91389 0.92626 0.82159 0.74658 0.76961 0.79965 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.49 71.98 0.68 -4.39 16 2 C 0.16 5.94 2.84 44.99 0.13 6.07 16 3 H 0.05 1.64 7.56 -2.39 -0.02 1.62 16 4 C -0.12 -3.30 4.29 30.60 0.13 -3.17 16 5 C 0.14 4.62 2.52 44.99 0.11 4.74 16 6 H 0.04 1.97 7.05 -2.39 -0.02 1.95 16 7 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 8 N -0.71 -19.30 4.45 -442.53 -1.97 -21.27 16 9 C 0.50 16.08 7.79 87.66 0.68 16.76 16 10 O -0.59 -25.75 15.64 -3.01 -0.05 -25.80 16 11 C -0.12 -2.69 5.68 29.85 0.17 -2.52 16 12 C -0.03 -0.77 5.02 29.85 0.15 -0.62 16 13 C -0.19 -4.11 5.42 -19.94 -0.11 -4.22 16 14 C -0.22 -4.01 10.87 22.19 0.24 -3.77 16 15 C -0.04 -0.60 12.09 66.97 0.81 0.21 16 16 O -0.19 -3.79 10.65 -2.56 -0.03 -3.82 16 17 C -0.05 -1.04 12.01 66.97 0.80 -0.24 16 18 N -0.73 -36.51 4.49 -322.94 -1.45 -37.96 16 19 C -0.23 -12.65 9.93 84.03 0.83 -11.82 16 20 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 21 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 22 N -0.97 -61.76 13.06 21.65 0.28 -61.48 16 23 Si 0.96 48.00 29.55 68.60 2.03 50.03 16 24 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 25 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 26 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 7.95 8.60 -92.71 -0.80 7.16 16 36 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 39 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 40 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.21 3.62 8.06 -2.91 -0.02 3.59 16 43 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 44 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -78.49 371.04 4.07 -74.41 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.53 Total: 36.36 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.79 Total: -10.48 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -3.14 Total: -120.71 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.07 Total: -29.62 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -78.49 4.07 -74.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134055891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.106 kcal (2) G-P(sol) polarization free energy of solvation -78.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds