Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.41385 * 126.57888 * 90.00498 * 13 12 11 15 15 C 1.34509 * 106.84108 * 179.97438 * 14 13 12 16 16 O 1.34310 * 108.42186 * 359.97438 * 15 14 13 17 17 C 1.34311 * 109.47250 * 359.77473 * 16 15 14 18 18 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 19 19 C 1.36935 * 120.00239 * 275.00034 * 18 2 1 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 2 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 2 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 28 28 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 31 31 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 32 32 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 33 33 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 34 34 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 35 35 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 36 36 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 37 37 H 1.09010 * 109.46881 * 60.00283 * 11 9 8 38 38 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 39 39 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 40 40 H 1.08002 * 126.57398 * 359.92343 * 14 13 12 41 41 H 1.08004 * 125.79021 * 179.97438 * 15 14 13 42 42 H 1.07994 * 125.78311 * 180.23459 * 17 16 15 43 43 H 0.97004 * 119.99747 * 95.00774 * 18 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3634 4.3152 -0.9114 14 6 7.1550 5.3683 0.0086 15 6 7.6576 6.4821 -0.5537 16 8 8.1571 6.1611 -1.7584 17 6 7.9862 4.8472 -1.9783 18 7 2.0183 -0.6906 1.1962 19 6 2.1490 -0.0075 2.3758 20 1 1.8918 1.0403 2.4244 21 6 2.6122 -0.6617 3.5091 22 7 2.9205 -1.9400 3.4511 23 14 2.7899 0.2699 5.1184 24 1 3.2931 -0.6500 6.1700 25 1 3.7495 1.3891 4.9391 26 1 1.4684 0.8113 5.5254 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 3.8002 -2.4818 -2.3594 33 1 3.6547 -1.0591 -3.4193 34 1 5.1716 -1.3615 -2.5380 35 1 3.3284 1.4130 -1.9027 36 1 5.5290 2.9085 -2.3301 37 1 4.8577 3.2954 -0.7275 38 1 6.9954 2.6202 0.3316 39 1 7.6673 2.2333 -1.2706 40 1 6.6821 5.2931 0.9767 41 1 7.6593 7.4674 -0.1114 42 1 8.2940 4.3097 -2.8630 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134055892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = -30.935918 kcal Electronic energy + Delta-G solvation = -23729.722631 eV Core-core repulsion = 20262.487799 eV Total energy + Delta-G solvation = -3467.234832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.65687 -39.58255 -37.00727 -34.95484 -34.46479 -32.34861 -31.64796 -30.53684 -29.08549 -28.28473 -26.38008 -24.81478 -23.38382 -21.70679 -21.30178 -20.39061 -19.97876 -19.84180 -17.66815 -17.35419 -16.64971 -16.06711 -15.81216 -15.41769 -14.88025 -14.69114 -14.19064 -13.94220 -13.55994 -13.47860 -13.18579 -12.98836 -12.89410 -12.50992 -12.32420 -12.13768 -12.03287 -11.87883 -11.68025 -11.64975 -11.01306 -10.91124 -10.70719 -10.46601 -10.43645 -10.07899 -9.91831 -9.83150 -9.43100 -9.09834 -8.85167 -8.68520 -8.65907 -6.95836 -6.01963 -3.01217 1.63314 2.46984 2.99778 3.02033 3.51975 3.54834 3.59278 3.76295 4.65678 4.72473 4.73647 4.90248 5.04563 5.08073 5.20853 5.26430 5.37670 5.42526 5.57053 5.63005 5.66704 5.69579 5.70766 5.83864 5.90018 5.94984 5.95876 6.07309 6.12970 6.19543 6.23198 6.31174 6.38446 6.43280 6.49055 6.65201 6.79653 6.91145 6.98815 7.02175 7.83238 7.86566 8.59843 8.83278 9.30615 10.16758 10.31545 11.46533 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.004185 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.117898 B = 6688.940895 C = 8117.683713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.178 3.822 3 H 0.047 0.953 4 C -0.132 4.132 5 C 0.144 3.856 6 H 0.101 0.899 7 C -0.160 4.160 8 N -0.719 5.719 9 C 0.512 3.488 10 O -0.536 6.536 11 C -0.132 4.132 12 C -0.036 4.036 13 C -0.172 4.172 14 C -0.206 4.206 15 C -0.047 4.047 16 O -0.181 6.181 17 C -0.046 4.046 18 N -0.732 5.732 19 C -0.326 4.326 20 H 0.060 0.940 21 C -0.044 4.044 22 N -0.944 5.944 23 Si 1.076 2.924 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.297 1.297 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.394 0.606 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.149 0.851 41 H 0.201 0.799 42 H 0.200 0.800 43 H 0.365 0.635 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.940 12.941 -15.125 20.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.068 3.932 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.039 3.961 6 H 0.119 0.881 7 C -0.219 4.219 8 N -0.370 5.370 9 C 0.298 3.702 10 O -0.412 6.412 11 C -0.173 4.173 12 C -0.074 4.074 13 C -0.173 4.173 14 C -0.225 4.225 15 C -0.114 4.114 16 O -0.077 6.077 17 C -0.113 4.113 18 N -0.375 5.375 19 C -0.457 4.457 20 H 0.079 0.921 21 C -0.241 4.241 22 N -0.589 5.589 23 Si 0.908 3.092 24 H -0.210 1.210 25 H -0.224 1.224 26 H -0.224 1.224 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.167 0.833 41 H 0.217 0.783 42 H 0.217 0.783 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.044 12.653 -13.302 19.328 hybrid contribution -1.027 0.138 -1.635 1.935 sum 5.017 12.791 -14.937 20.295 Atomic orbital electron populations 1.22444 0.99521 1.00704 0.99851 1.20148 0.91483 0.95535 0.86080 0.93514 1.22185 0.93967 1.02018 0.98909 1.20975 0.94864 0.80621 0.99595 0.88139 1.22179 1.01527 1.00086 0.98075 1.45980 1.16647 1.11430 1.62899 1.20556 0.81832 0.90141 0.77643 1.90722 1.51134 1.56771 1.42564 1.21620 0.98638 0.94043 1.02952 1.19708 0.94781 0.89580 1.03357 1.20556 1.04250 0.97239 0.95287 1.21864 1.06176 0.92412 1.02076 1.24008 1.01993 1.00523 0.84877 1.84054 1.63972 1.25830 1.33823 1.23872 1.04937 0.81194 1.01334 1.42402 1.79137 1.09668 1.06259 1.19946 1.41681 0.94872 0.89167 0.92148 1.25666 0.99488 0.97502 1.01484 1.70872 1.51476 1.08214 1.28359 0.83294 0.75707 0.74376 0.75856 1.21049 1.22407 1.22430 0.92865 0.94611 0.93691 0.90889 0.91961 0.91897 0.93128 0.92507 0.77309 0.89412 0.88894 0.89821 0.90418 0.83309 0.78256 0.78306 0.80138 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.18 3.41 2.84 -67.93 -0.19 3.21 16 3 H 0.05 0.93 7.56 -51.93 -0.39 0.53 16 4 C -0.13 -2.02 4.29 -26.73 -0.11 -2.14 16 5 C 0.14 2.33 2.52 -67.93 -0.17 2.16 16 6 H 0.10 2.16 7.05 -51.93 -0.37 1.79 16 7 C -0.16 -2.20 9.48 37.16 0.35 -1.85 16 8 N -0.72 -10.39 4.45 -53.80 -0.24 -10.63 16 9 C 0.51 8.23 7.79 -10.98 -0.09 8.14 16 10 O -0.54 -11.11 15.64 5.56 0.09 -11.02 16 11 C -0.13 -1.58 5.68 -27.88 -0.16 -1.74 16 12 C -0.04 -0.46 5.02 -27.88 -0.14 -0.60 16 13 C -0.17 -1.95 5.42 -104.74 -0.57 -2.52 16 14 C -0.21 -2.25 10.87 -39.70 -0.43 -2.68 16 15 C -0.05 -0.43 12.09 29.41 0.36 -0.08 16 16 O -0.18 -1.89 10.65 5.67 0.06 -1.83 16 17 C -0.05 -0.45 12.01 29.41 0.35 -0.10 16 18 N -0.73 -18.10 4.49 -53.43 -0.24 -18.34 16 19 C -0.33 -9.21 9.93 -15.06 -0.15 -9.36 16 20 H 0.06 1.70 7.83 -52.48 -0.41 1.29 16 21 C -0.04 -1.30 5.50 -17.43 -0.10 -1.39 16 22 N -0.94 -29.83 13.70 55.49 0.76 -29.07 16 23 Si 1.08 26.74 29.92 -169.99 -5.09 21.66 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.30 -7.00 7.11 56.52 0.40 -6.60 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.39 4.49 8.60 -40.82 -0.35 4.14 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 38 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.20 1.12 8.06 -52.48 -0.42 0.70 16 42 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.37 9.46 6.63 -40.82 -0.27 9.19 16 44 H 0.25 7.92 6.77 -40.82 -0.28 7.64 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -35.45 369.34 -6.99 -42.43 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.20 Total: 12.74 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.69 Total: -11.52 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.28 Total: -58.03 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.15 Total: -12.85 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -5.09 Total: 21.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.45 -6.99 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134055892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.496 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds