Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21283 * 120.00603 * 359.97438 * 9 8 5 11 11 C 1.50704 * 119.99854 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47027 * 180.02562 * 12 11 9 14 14 C 1.41385 * 126.57888 * 90.00498 * 13 12 11 15 15 C 1.34509 * 106.84108 * 179.97438 * 14 13 12 16 16 O 1.34310 * 108.42186 * 359.97438 * 15 14 13 17 17 C 1.34311 * 109.47250 * 359.77473 * 16 15 14 18 18 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 19 19 C 1.36935 * 120.00239 * 275.00034 * 18 2 1 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 2 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 2 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 28 28 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 29 29 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 31 31 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 32 32 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 33 33 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 34 34 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 35 35 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 36 36 H 1.08993 * 109.46986 * 300.00093 * 11 9 8 37 37 H 1.09010 * 109.46881 * 60.00283 * 11 9 8 38 38 H 1.09000 * 109.47634 * 300.00460 * 12 11 9 39 39 H 1.09003 * 109.47199 * 60.00436 * 12 11 9 40 40 H 1.08002 * 126.57398 * 359.92343 * 14 13 12 41 41 H 1.08004 * 125.79021 * 179.97438 * 15 14 13 42 42 H 1.07994 * 125.78311 * 180.23459 * 17 16 15 43 43 H 0.97004 * 119.99747 * 95.00774 * 18 2 1 44 44 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9356 0.4343 -0.5730 11 6 5.5550 2.6567 -1.2699 12 6 6.9698 2.8720 -0.7286 13 6 7.3634 4.3152 -0.9114 14 6 7.1550 5.3683 0.0086 15 6 7.6576 6.4821 -0.5537 16 8 8.1571 6.1611 -1.7584 17 6 7.9862 4.8472 -1.9783 18 7 2.0183 -0.6906 1.1962 19 6 2.1490 -0.0075 2.3758 20 1 1.8918 1.0403 2.4244 21 6 2.6122 -0.6617 3.5091 22 7 2.9205 -1.9400 3.4511 23 14 2.7899 0.2699 5.1184 24 1 3.2931 -0.6500 6.1700 25 1 3.7495 1.3891 4.9391 26 1 1.4684 0.8113 5.5254 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1369 32 1 3.8002 -2.4818 -2.3594 33 1 3.6547 -1.0591 -3.4193 34 1 5.1716 -1.3615 -2.5380 35 1 3.3284 1.4130 -1.9027 36 1 5.5290 2.9085 -2.3301 37 1 4.8577 3.2954 -0.7275 38 1 6.9954 2.6202 0.3316 39 1 7.6673 2.2333 -1.2706 40 1 6.6821 5.2931 0.9767 41 1 7.6593 7.4674 -0.1114 42 1 8.2940 4.3097 -2.8630 43 1 2.2490 -1.6318 1.1526 44 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134055892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = -55.049555 kcal Electronic energy + Delta-G solvation = -23730.768277 eV Core-core repulsion = 20262.487799 eV Total energy + Delta-G solvation = -3468.280478 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.42721 -40.88938 -38.51582 -36.33493 -35.71915 -34.17227 -32.74110 -31.68343 -30.20717 -29.89558 -27.67909 -25.88213 -25.50148 -22.59076 -22.44403 -21.61660 -21.29975 -20.94812 -19.47134 -18.53808 -17.78130 -17.21964 -16.80406 -16.71672 -16.46933 -15.97121 -15.52281 -15.47509 -15.13462 -14.71894 -14.62061 -14.30940 -13.68530 -13.60497 -13.54642 -13.38477 -13.18726 -13.07590 -12.93667 -12.89942 -12.76634 -12.53319 -12.19091 -11.92475 -11.91236 -11.86061 -11.57654 -11.18421 -10.93080 -10.88325 -10.53000 -9.98541 -9.42079 -9.06102 -8.35397 -5.26828 0.89223 1.52374 1.63291 1.64508 1.73947 1.78707 2.29304 2.38810 2.70871 3.43782 3.69183 3.75151 3.87031 3.91165 4.00053 4.05490 4.18699 4.28690 4.32629 4.41607 4.47265 4.60595 4.66141 4.71257 4.76048 4.81558 4.85146 4.86833 4.95074 5.00751 5.11005 5.17900 5.22603 5.26574 5.35475 5.36227 5.53331 5.58067 5.60631 5.67233 6.22318 6.52764 6.66091 7.15234 7.39598 8.05795 8.16940 9.17002 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011806 B = 0.004185 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.117898 B = 6688.940895 C = 8117.683713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.145 3.855 6 H 0.039 0.961 7 C -0.150 4.150 8 N -0.707 5.707 9 C 0.503 3.497 10 O -0.592 6.592 11 C -0.119 4.119 12 C -0.030 4.030 13 C -0.194 4.194 14 C -0.235 4.235 15 C -0.036 4.036 16 O -0.187 6.187 17 C -0.038 4.038 18 N -0.744 5.744 19 C -0.316 4.316 20 H 0.061 0.939 21 C -0.109 4.109 22 N -0.979 5.979 23 Si 1.120 2.880 24 H -0.294 1.294 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.027 0.973 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.413 0.587 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.146 0.854 41 H 0.235 0.765 42 H 0.229 0.771 43 H 0.355 0.645 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 15.374 -17.623 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.060 0.940 4 C -0.157 4.157 5 C 0.040 3.960 6 H 0.057 0.943 7 C -0.208 4.208 8 N -0.359 5.359 9 C 0.291 3.709 10 O -0.473 6.473 11 C -0.159 4.159 12 C -0.068 4.068 13 C -0.195 4.195 14 C -0.254 4.254 15 C -0.103 4.103 16 O -0.083 6.083 17 C -0.105 4.105 18 N -0.387 5.387 19 C -0.448 4.448 20 H 0.079 0.921 21 C -0.300 4.300 22 N -0.628 5.628 23 Si 0.946 3.054 24 H -0.220 1.220 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.249 0.751 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.164 0.836 41 H 0.251 0.749 42 H 0.245 0.755 43 H 0.187 0.813 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.988 15.145 -15.870 22.497 hybrid contribution -0.738 -0.570 -0.936 1.321 sum 4.250 14.575 -16.805 22.648 Atomic orbital electron populations 1.22295 0.97717 1.00770 1.00759 1.20460 0.92561 0.95199 0.85688 0.93968 1.22087 0.93014 1.02025 0.98533 1.20779 0.95349 0.81785 0.98057 0.94261 1.22069 1.00436 1.00068 0.98224 1.45889 1.16564 1.11210 1.62216 1.21349 0.81596 0.91446 0.76490 1.90702 1.52871 1.58599 1.45125 1.21604 0.98102 0.90859 1.05305 1.19535 0.95389 0.90754 1.01118 1.20491 1.06012 0.96431 0.96560 1.22027 1.07698 0.93252 1.02449 1.24614 1.00148 1.01395 0.84105 1.84084 1.63924 1.26010 1.34235 1.24354 1.03482 0.81009 1.01617 1.42630 1.79479 1.09355 1.07194 1.20263 1.39199 0.94920 0.90391 0.92099 1.26998 1.00215 0.97670 1.05084 1.70978 1.54473 1.09495 1.27882 0.82728 0.76848 0.73508 0.72356 1.22046 1.21159 1.20005 0.95365 0.90234 0.94049 0.90854 0.87312 0.91483 0.89733 0.94284 0.75060 0.85648 0.88216 0.93290 0.90760 0.83631 0.74882 0.75463 0.81310 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.49 71.98 0.68 -4.48 16 2 C 0.17 6.26 2.84 44.99 0.13 6.39 16 3 H 0.04 1.61 7.56 -2.38 -0.02 1.59 16 4 C -0.12 -3.35 4.29 30.60 0.13 -3.22 16 5 C 0.15 4.65 2.52 45.00 0.11 4.76 16 6 H 0.04 1.77 7.05 -2.39 -0.02 1.75 16 7 C -0.15 -3.91 9.48 71.98 0.68 -3.23 16 8 N -0.71 -19.57 4.45 -442.51 -1.97 -21.54 16 9 C 0.50 16.25 7.79 87.66 0.68 16.93 16 10 O -0.59 -25.90 15.64 -3.04 -0.05 -25.95 16 11 C -0.12 -2.72 5.68 29.85 0.17 -2.55 16 12 C -0.03 -0.76 5.02 29.85 0.15 -0.61 16 13 C -0.19 -4.23 5.42 -19.94 -0.11 -4.34 16 14 C -0.24 -4.95 10.87 22.19 0.24 -4.71 16 15 C -0.04 -0.59 12.09 66.97 0.81 0.22 16 16 O -0.19 -3.44 10.65 -2.63 -0.03 -3.47 16 17 C -0.04 -0.66 12.01 66.97 0.80 0.15 16 18 N -0.74 -37.56 4.49 -322.94 -1.45 -39.01 16 19 C -0.32 -18.18 9.93 84.03 0.83 -17.35 16 20 H 0.06 3.44 7.83 -2.91 -0.02 3.41 16 21 C -0.11 -6.59 5.50 84.86 0.47 -6.12 16 22 N -0.98 -64.22 13.70 21.65 0.30 -63.92 16 23 Si 1.12 54.83 29.92 68.60 2.05 56.88 16 24 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.41 8.15 8.60 -92.71 -0.80 7.35 16 36 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.10 2.17 8.14 -2.38 -0.02 2.16 16 38 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 39 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 40 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.24 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.23 2.38 8.06 -2.91 -0.02 2.36 16 43 H 0.36 19.18 6.63 -92.71 -0.61 18.56 16 44 H 0.24 15.85 6.77 -92.71 -0.63 15.22 16 Total: -1.00 -82.07 369.34 4.36 -77.70 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -0.28 Total: 37.46 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 5.79 Total: -18.16 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -3.12 Total: -124.47 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.08 Total: -29.42 kcal Atomic # 14 Polarization: 54.83 SS G_CDS: 2.05 Total: 56.88 kcal Total: -82.07 4.36 -77.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134055892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.653 kcal (2) G-P(sol) polarization free energy of solvation -82.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds