Wall clock time and date at job start Tue Mar 31 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00118 * 2 1 4 4 O 1.42898 * 109.47332 * 134.99892 * 3 2 1 5 5 C 1.42901 * 113.99976 * 179.97438 * 4 3 2 6 6 H 1.08990 * 109.47405 * 330.00266 * 5 4 3 7 7 C 1.53006 * 109.46829 * 90.00516 * 5 4 3 8 8 C 1.50700 * 109.46753 * 209.99877 * 5 4 3 9 9 O 1.21277 * 120.00488 * 355.00867 * 8 5 4 10 10 N 1.34783 * 119.99503 * 175.00351 * 8 5 4 11 11 C 1.47894 * 134.33829 * 180.02562 * 10 8 5 12 12 C 1.52379 * 85.58747 * 156.51272 * 11 10 8 13 13 C 1.47886 * 134.34573 * 359.97438 * 10 8 5 14 14 C 1.53649 * 116.38926 * 141.35766 * 12 11 10 15 15 C 1.54603 * 102.73243 * 95.48365 * 14 12 11 16 16 N 1.47133 * 107.36300 * 20.75480 * 15 14 12 17 17 C 1.36936 * 125.58815 * 180.92737 * 16 15 14 18 18 H 1.08005 * 120.00464 * 176.42613 * 17 16 15 19 19 C 1.38810 * 119.99933 * 356.43065 * 17 16 15 20 20 N 1.31623 * 120.00204 * 211.66449 * 19 17 16 21 21 Si 1.86801 * 120.00118 * 31.38476 * 19 17 16 22 22 H 1.48500 * 109.47019 * 275.60191 * 21 19 17 23 23 H 1.48504 * 109.47048 * 35.59968 * 21 19 17 24 24 H 1.48501 * 109.47135 * 155.59950 * 21 19 17 25 25 C 1.47724 * 108.82881 * 1.19055 * 16 15 14 26 26 H 1.08000 * 119.99700 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99776 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99892 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47070 * 14.99870 * 3 2 1 30 30 H 1.08997 * 109.47377 * 255.00120 * 3 2 1 31 31 H 1.08998 * 109.47035 * 59.99703 * 7 5 4 32 32 H 1.09003 * 109.46908 * 179.97438 * 7 5 4 33 33 H 1.09002 * 109.46840 * 299.99850 * 7 5 4 34 34 H 1.08994 * 113.85668 * 42.34656 * 11 10 8 35 35 H 1.08994 * 113.96552 * 270.68755 * 11 10 8 36 36 H 1.08997 * 113.85088 * 89.31831 * 13 10 8 37 37 H 1.09006 * 113.85480 * 317.65620 * 13 10 8 38 38 H 1.09004 * 110.76177 * 337.17442 * 14 12 11 39 39 H 1.09004 * 110.76156 * 213.79473 * 14 12 11 40 40 H 1.08995 * 109.86627 * 261.30654 * 15 14 12 41 41 H 1.09003 * 109.98111 * 140.26024 * 15 14 12 42 42 H 0.96999 * 119.99534 * 354.69865 * 20 19 17 43 43 H 1.09008 * 110.40087 * 96.07042 * 25 16 15 44 44 H 1.08993 * 110.40221 * 218.48643 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9085 2.4349 1.0320 6 1 3.9137 2.9309 0.0615 7 6 3.3043 3.3714 2.0803 8 6 5.3206 2.0852 1.4252 9 8 5.6060 0.9406 1.7065 10 7 6.2664 3.0447 1.4641 11 6 7.7079 3.0623 1.7946 12 6 7.7680 4.3226 0.9402 13 6 6.2760 4.4983 1.1926 14 6 8.6841 5.4476 1.4461 15 6 9.9953 5.1958 0.6667 16 7 9.6557 4.3861 -0.5139 17 6 10.5444 3.9341 -1.4526 18 1 10.2045 3.2959 -2.2549 19 6 11.8821 4.2960 -1.3729 20 7 12.5931 4.4340 -2.4720 21 14 12.6712 4.5949 0.2936 22 1 12.4021 5.9900 0.7257 23 1 12.1014 3.6502 1.2877 24 1 14.1374 4.3822 0.1924 25 6 8.1982 4.1460 -0.5242 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3856 2.1160 0.2660 30 1 2.4756 1.4868 -0.9926 31 1 3.2990 2.8753 3.0508 32 1 3.9008 4.2817 2.1411 33 1 2.2828 3.6243 1.7959 34 1 8.2653 2.2221 1.3807 35 1 7.9180 3.2349 2.8500 36 1 6.0455 5.1110 2.0641 37 1 5.7099 4.7850 0.3062 38 1 8.8495 5.3577 2.5198 39 1 8.2690 6.4246 1.1986 40 1 10.7022 4.6551 1.2959 41 1 10.4299 6.1448 0.3525 42 1 12.2052 4.2087 -3.3320 43 1 7.6974 4.8755 -1.1607 44 1 7.9824 3.1329 -0.8633 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148874362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:43 Heat of formation + Delta-G solvation = 15.600895 kcal Electronic energy + Delta-G solvation = -24064.409752 eV Core-core repulsion = 20599.192908 eV Total energy + Delta-G solvation = -3465.216845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.81056 -39.14575 -37.60944 -35.88858 -34.32931 -32.53659 -31.68237 -29.88884 -28.65911 -26.59657 -26.44659 -26.14283 -23.91801 -22.91813 -20.80140 -20.46471 -19.37291 -18.54329 -17.53868 -17.35857 -16.87175 -16.23027 -15.69092 -15.53980 -15.24126 -14.88449 -14.67747 -14.07501 -13.49608 -13.44714 -13.38591 -13.21686 -13.07336 -12.85378 -12.58274 -12.37518 -12.01131 -11.92620 -11.71398 -11.53716 -11.24494 -11.14415 -10.96716 -10.64961 -10.43033 -10.37808 -10.11802 -9.67987 -9.65641 -9.43624 -9.18378 -8.67325 -8.36365 -7.09176 -6.38602 -3.13126 1.79272 2.54301 2.65074 3.40547 3.50455 3.57415 3.67641 4.22914 4.40150 4.57460 4.59542 4.66358 4.69164 4.76488 4.86547 4.88653 5.04123 5.12749 5.20194 5.27079 5.28719 5.31124 5.31680 5.39045 5.48016 5.53607 5.70192 5.74372 5.79120 5.85906 5.94621 6.07190 6.20871 6.23605 6.29892 6.45747 6.48368 6.54553 6.76759 6.83993 7.67475 7.70034 8.17886 8.33178 9.03851 9.60207 10.26403 11.12791 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028095 B = 0.003267 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.376686 B = 8569.744439 C = 8969.311167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.085 3.915 4 O -0.354 6.354 5 C 0.076 3.924 6 H 0.085 0.915 7 C -0.168 4.168 8 C 0.535 3.465 9 O -0.523 6.523 10 N -0.640 5.640 11 C 0.130 3.870 12 C -0.109 4.109 13 C 0.113 3.887 14 C -0.113 4.113 15 C 0.106 3.894 16 N -0.609 5.609 17 C -0.338 4.338 18 H 0.078 0.922 19 C -0.018 4.018 20 N -0.912 5.912 21 Si 1.065 2.935 22 H -0.292 1.292 23 H -0.292 1.292 24 H -0.300 1.300 25 C 0.166 3.834 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.032 0.968 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.270 1.235 8.773 23.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.009 3.991 4 O -0.272 6.272 5 C 0.015 3.985 6 H 0.103 0.897 7 C -0.226 4.226 8 C 0.323 3.677 9 O -0.398 6.398 10 N -0.377 5.377 11 C 0.009 3.991 12 C -0.111 4.111 13 C -0.010 4.010 14 C -0.151 4.151 15 C -0.019 4.019 16 N -0.336 5.336 17 C -0.465 4.465 18 H 0.095 0.905 19 C -0.220 4.220 20 N -0.552 5.552 21 Si 0.899 3.101 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.228 1.228 25 C 0.040 3.960 26 H 0.123 0.877 27 H 0.115 0.885 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -20.771 0.701 9.668 22.922 hybrid contribution -1.521 -0.334 -0.865 1.781 sum -22.293 0.367 8.803 23.971 Atomic orbital electron populations 1.23822 0.95454 1.02245 1.00430 1.22744 0.95589 0.98287 0.99856 1.21672 0.88937 0.96101 0.92434 1.88072 1.43864 1.35264 1.60010 1.21802 0.89384 0.87147 1.00165 0.89676 1.22213 1.01561 0.99060 0.99731 1.19969 0.85302 0.84614 0.77814 1.90724 1.81210 1.19560 1.48329 1.50132 1.10521 1.08704 1.68388 1.22970 0.78973 0.98055 0.99130 1.22616 0.93533 0.95814 0.99139 1.23103 0.96158 0.80854 1.00840 1.22335 0.95840 0.97436 0.99532 1.21822 0.95093 0.95823 0.89166 1.44845 1.01665 1.60976 1.26162 1.19934 0.90203 1.32266 1.04078 0.90454 1.25655 0.93479 0.98573 1.04244 1.70925 1.42824 1.43399 0.98044 0.83860 0.74865 0.75987 0.75383 1.21978 1.22057 1.22813 1.21095 0.86067 0.98721 0.90159 0.87737 0.88460 0.86353 0.92586 0.92027 0.91157 0.90780 0.91311 0.89425 0.89673 0.89277 0.89788 0.90971 0.90597 0.94734 0.93890 0.92613 0.95074 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 14.31 29.01 0.42 -0.90 16 2 C -0.15 -1.35 9.89 -36.03 -0.36 -1.71 16 3 C 0.08 0.81 6.16 36.00 0.22 1.03 16 4 O -0.35 -4.70 9.51 -55.09 -0.52 -5.23 16 5 C 0.08 0.89 2.91 -27.88 -0.08 0.81 16 6 H 0.09 0.82 7.79 -51.93 -0.40 0.41 16 7 C -0.17 -1.45 9.44 37.16 0.35 -1.10 16 8 C 0.54 8.31 7.41 -10.98 -0.08 8.22 16 9 O -0.52 -10.59 17.23 -14.30 -0.25 -10.84 16 10 N -0.64 -8.85 3.60 -186.90 -0.67 -9.52 16 11 C 0.13 1.95 8.16 -3.59 -0.03 1.92 16 12 C -0.11 -1.59 0.99 -154.74 -0.15 -1.74 16 13 C 0.11 1.20 6.62 -3.62 -0.02 1.18 16 14 C -0.11 -1.63 6.36 -25.55 -0.16 -1.80 16 15 C 0.11 2.18 4.86 -2.85 -0.01 2.17 16 16 N -0.61 -14.52 3.39 -170.36 -0.58 -15.09 16 17 C -0.34 -9.61 10.42 -15.06 -0.16 -9.77 16 18 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 19 C -0.02 -0.54 5.44 -17.43 -0.09 -0.63 16 20 N -0.91 -28.41 13.70 55.49 0.76 -27.65 16 21 Si 1.07 26.44 24.65 -169.99 -4.19 22.25 16 22 H -0.29 -6.75 6.40 56.52 0.36 -6.38 16 23 H -0.29 -6.90 6.41 56.52 0.36 -6.54 16 24 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 25 C 0.17 3.16 6.65 -3.04 -0.02 3.14 16 26 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 27 H 0.10 0.58 7.90 -52.48 -0.41 0.16 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.06 0.42 7.59 -51.93 -0.39 0.03 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.53 6.62 -51.93 -0.34 0.19 16 33 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 34 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 35 H 0.09 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.09 0.71 8.02 -51.93 -0.42 0.30 16 37 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.07 0.88 7.99 -51.93 -0.41 0.46 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.76 4.26 -51.93 -0.22 0.54 16 41 H 0.04 0.94 6.87 -51.93 -0.36 0.59 16 42 H 0.26 8.12 8.73 -40.82 -0.36 7.77 16 43 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 LS Contribution 354.30 15.07 5.34 5.34 Total: -1.00 -35.45 354.30 -7.54 -42.99 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.24 Total: -3.07 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -0.19 Total: 0.82 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.49 Total: -52.27 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.77 Total: -16.07 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -4.19 Total: 22.25 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.45 -7.54 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148874362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.588 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds