Wall clock time and date at job start Tue Mar 31 2020 07:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00118 * 2 1 4 4 O 1.42898 * 109.47332 * 134.99892 * 3 2 1 5 5 C 1.42901 * 113.99976 * 179.97438 * 4 3 2 6 6 H 1.08990 * 109.47405 * 330.00266 * 5 4 3 7 7 C 1.53006 * 109.46829 * 90.00516 * 5 4 3 8 8 C 1.50700 * 109.46753 * 209.99877 * 5 4 3 9 9 O 1.21277 * 120.00488 * 355.00867 * 8 5 4 10 10 N 1.34783 * 119.99503 * 175.00351 * 8 5 4 11 11 C 1.47894 * 134.33829 * 180.02562 * 10 8 5 12 12 C 1.52379 * 85.58747 * 156.51272 * 11 10 8 13 13 C 1.47886 * 134.34573 * 359.97438 * 10 8 5 14 14 C 1.53649 * 116.38926 * 141.35766 * 12 11 10 15 15 C 1.54603 * 102.73243 * 95.48365 * 14 12 11 16 16 N 1.47133 * 107.36300 * 20.75480 * 15 14 12 17 17 C 1.36936 * 125.58815 * 180.92737 * 16 15 14 18 18 H 1.08005 * 120.00464 * 176.42613 * 17 16 15 19 19 C 1.38810 * 119.99933 * 356.43065 * 17 16 15 20 20 N 1.31623 * 120.00204 * 211.66449 * 19 17 16 21 21 Si 1.86801 * 120.00118 * 31.38476 * 19 17 16 22 22 H 1.48500 * 109.47019 * 275.60191 * 21 19 17 23 23 H 1.48504 * 109.47048 * 35.59968 * 21 19 17 24 24 H 1.48501 * 109.47135 * 155.59950 * 21 19 17 25 25 C 1.47724 * 108.82881 * 1.19055 * 16 15 14 26 26 H 1.08000 * 119.99700 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99776 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.99892 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47070 * 14.99870 * 3 2 1 30 30 H 1.08997 * 109.47377 * 255.00120 * 3 2 1 31 31 H 1.08998 * 109.47035 * 59.99703 * 7 5 4 32 32 H 1.09003 * 109.46908 * 179.97438 * 7 5 4 33 33 H 1.09002 * 109.46840 * 299.99850 * 7 5 4 34 34 H 1.08994 * 113.85668 * 42.34656 * 11 10 8 35 35 H 1.08994 * 113.96552 * 270.68755 * 11 10 8 36 36 H 1.08997 * 113.85088 * 89.31831 * 13 10 8 37 37 H 1.09006 * 113.85480 * 317.65620 * 13 10 8 38 38 H 1.09004 * 110.76177 * 337.17442 * 14 12 11 39 39 H 1.09004 * 110.76156 * 213.79473 * 14 12 11 40 40 H 1.08995 * 109.86627 * 261.30654 * 15 14 12 41 41 H 1.09003 * 109.98111 * 140.26024 * 15 14 12 42 42 H 0.96999 * 119.99534 * 354.69865 * 20 19 17 43 43 H 1.09008 * 110.40087 * 96.07042 * 25 16 15 44 44 H 1.08993 * 110.40221 * 218.48643 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9085 2.4349 1.0320 6 1 3.9137 2.9309 0.0615 7 6 3.3043 3.3714 2.0803 8 6 5.3206 2.0852 1.4252 9 8 5.6060 0.9406 1.7065 10 7 6.2664 3.0447 1.4641 11 6 7.7079 3.0623 1.7946 12 6 7.7680 4.3226 0.9402 13 6 6.2760 4.4983 1.1926 14 6 8.6841 5.4476 1.4461 15 6 9.9953 5.1958 0.6667 16 7 9.6557 4.3861 -0.5139 17 6 10.5444 3.9341 -1.4526 18 1 10.2045 3.2959 -2.2549 19 6 11.8821 4.2960 -1.3729 20 7 12.5931 4.4340 -2.4720 21 14 12.6712 4.5949 0.2936 22 1 12.4021 5.9900 0.7257 23 1 12.1014 3.6502 1.2877 24 1 14.1374 4.3822 0.1924 25 6 8.1982 4.1460 -0.5242 26 1 -0.5399 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3856 2.1160 0.2660 30 1 2.4756 1.4868 -0.9926 31 1 3.2990 2.8753 3.0508 32 1 3.9008 4.2817 2.1411 33 1 2.2828 3.6243 1.7959 34 1 8.2653 2.2221 1.3807 35 1 7.9180 3.2349 2.8500 36 1 6.0455 5.1110 2.0641 37 1 5.7099 4.7850 0.3062 38 1 8.8495 5.3577 2.5198 39 1 8.2690 6.4246 1.1986 40 1 10.7022 4.6551 1.2959 41 1 10.4299 6.1448 0.3525 42 1 12.2052 4.2087 -3.3320 43 1 7.6974 4.8755 -1.1607 44 1 7.9824 3.1329 -0.8633 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148874362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:43 Heat of formation + Delta-G solvation = -9.982991 kcal Electronic energy + Delta-G solvation = -24065.519153 eV Core-core repulsion = 20599.192908 eV Total energy + Delta-G solvation = -3466.326245 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.95463 -40.21170 -38.69208 -37.41880 -35.02443 -34.45874 -32.72104 -31.39060 -30.01034 -27.86086 -27.35196 -27.16246 -25.26379 -24.13639 -22.60457 -21.17422 -20.48048 -19.79918 -19.30344 -18.40626 -17.88831 -17.26705 -16.88863 -16.71011 -16.55234 -16.21262 -15.56967 -15.33817 -15.17100 -15.09046 -14.44818 -14.17366 -14.12013 -13.75094 -13.63722 -13.30371 -13.28783 -13.02074 -12.97468 -12.92485 -12.71555 -12.48246 -11.92203 -11.90048 -11.83609 -11.82015 -11.45928 -11.22260 -10.99569 -10.55823 -10.53178 -10.28226 -9.78914 -9.11378 -8.71389 -5.36130 1.14385 1.39491 1.49584 1.53204 1.61047 1.70997 2.52163 2.77819 2.98345 3.21950 3.31485 3.52402 3.61277 3.83814 3.93907 3.97658 4.04184 4.06426 4.17904 4.32704 4.37707 4.41252 4.53575 4.55175 4.59785 4.66326 4.69522 4.74557 4.80503 4.83961 4.91593 4.96920 5.01193 5.05923 5.16779 5.21156 5.32909 5.57278 5.62929 5.67133 6.09219 6.09796 6.62847 6.84934 7.05224 7.50633 8.15397 8.81635 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028095 B = 0.003267 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.376686 B = 8569.744439 C = 8969.311167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.181 4.181 3 C 0.082 3.918 4 O -0.390 6.390 5 C 0.078 3.922 6 H 0.108 0.892 7 C -0.159 4.159 8 C 0.524 3.476 9 O -0.588 6.588 10 N -0.640 5.640 11 C 0.120 3.880 12 C -0.102 4.102 13 C 0.132 3.868 14 C -0.095 4.095 15 C 0.091 3.909 16 N -0.633 5.633 17 C -0.330 4.330 18 H 0.038 0.962 19 C -0.078 4.078 20 N -0.948 5.948 21 Si 1.111 2.889 22 H -0.259 1.259 23 H -0.276 1.276 24 H -0.310 1.310 25 C 0.160 3.840 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.027 0.973 41 H 0.032 0.968 42 H 0.248 0.752 43 H 0.044 0.956 44 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.372 4.317 11.515 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.007 3.993 4 O -0.309 6.309 5 C 0.018 3.982 6 H 0.126 0.874 7 C -0.217 4.217 8 C 0.314 3.686 9 O -0.468 6.468 10 N -0.376 5.376 11 C -0.002 4.002 12 C -0.104 4.104 13 C 0.011 3.989 14 C -0.133 4.133 15 C -0.033 4.033 16 N -0.361 5.361 17 C -0.458 4.458 18 H 0.056 0.944 19 C -0.272 4.272 20 N -0.591 5.591 21 Si 0.938 3.062 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.239 1.239 25 C 0.035 3.965 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -23.938 3.838 12.416 27.238 hybrid contribution -0.636 -1.395 -1.852 2.404 sum -24.574 2.443 10.564 26.860 Atomic orbital electron populations 1.24065 0.94645 1.03710 0.97205 1.22753 0.96491 0.97785 1.02914 1.21852 0.88543 0.97016 0.91902 1.88039 1.45016 1.36723 1.61141 1.21951 0.86851 0.87246 1.02201 0.87439 1.22205 1.03100 0.98669 0.97702 1.20871 0.87035 0.83912 0.76769 1.90685 1.82498 1.22252 1.51404 1.50236 1.09685 1.10306 1.67363 1.23060 0.79691 0.96800 1.00653 1.22403 0.96874 0.95863 0.95232 1.23390 0.92599 0.79010 1.03924 1.22361 0.91801 0.98507 1.00585 1.22056 0.98752 0.94181 0.88273 1.44946 1.03077 1.61384 1.26648 1.19809 0.91362 1.30596 1.04046 0.94374 1.27014 0.94378 0.99116 1.06685 1.71048 1.43375 1.46622 0.98077 0.83289 0.73224 0.78071 0.71651 1.18472 1.20339 1.23936 1.21236 0.83808 0.97262 0.94156 0.86679 0.86488 0.88279 0.89871 0.91887 0.92718 0.88479 0.88930 0.93827 0.86714 0.84351 0.87387 0.87307 0.87366 0.95583 0.95051 0.94305 0.93800 0.96786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 14.31 67.78 0.97 -1.00 16 2 C -0.18 -3.25 9.89 25.64 0.25 -3.00 16 3 C 0.08 1.46 6.16 71.23 0.44 1.90 16 4 O -0.39 -10.13 9.51 -129.99 -1.24 -11.37 16 5 C 0.08 1.65 2.91 29.85 0.09 1.73 16 6 H 0.11 1.72 7.79 -2.39 -0.02 1.70 16 7 C -0.16 -2.09 9.44 71.98 0.68 -1.41 16 8 C 0.52 15.86 7.41 87.66 0.65 16.51 16 9 O -0.59 -24.76 17.23 15.97 0.28 -24.49 16 10 N -0.64 -16.12 3.60 -863.62 -3.11 -19.23 16 11 C 0.12 3.37 8.16 85.91 0.70 4.08 16 12 C -0.10 -2.60 0.99 -52.09 -0.05 -2.65 16 13 C 0.13 2.05 6.62 85.89 0.57 2.62 16 14 C -0.09 -2.22 6.36 31.36 0.20 -2.03 16 15 C 0.09 3.54 4.86 86.80 0.42 3.96 16 16 N -0.63 -30.23 3.39 -692.89 -2.35 -32.58 16 17 C -0.33 -19.54 10.42 84.03 0.88 -18.66 16 18 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 19 C -0.08 -4.68 5.44 84.86 0.46 -4.22 16 20 N -0.95 -61.66 13.70 21.65 0.30 -61.36 16 21 Si 1.11 53.77 24.65 68.60 1.69 55.46 16 22 H -0.26 -11.10 6.40 99.48 0.64 -10.47 16 23 H -0.28 -12.48 6.41 99.48 0.64 -11.84 16 24 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 25 C 0.16 6.00 6.65 86.36 0.57 6.58 16 26 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 27 H 0.12 0.98 7.90 -2.91 -0.02 0.96 16 28 H 0.10 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.08 0.97 7.59 -2.39 -0.02 0.95 16 30 H 0.06 1.04 8.08 -2.39 -0.02 1.02 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.80 6.62 -2.39 -0.02 0.78 16 33 H 0.09 0.80 7.87 -2.39 -0.02 0.78 16 34 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 35 H 0.12 2.56 8.04 -2.39 -0.02 2.54 16 36 H 0.14 1.01 8.02 -2.39 -0.02 0.99 16 37 H 0.11 1.27 8.12 -2.38 -0.02 1.25 16 38 H 0.11 1.87 7.99 -2.38 -0.02 1.86 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.03 1.07 4.26 -2.39 -0.01 1.06 16 41 H 0.03 1.29 6.87 -2.39 -0.02 1.28 16 42 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 43 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.01 0.59 8.08 -2.39 -0.02 0.57 16 Total: -1.00 -86.68 354.30 3.19 -83.49 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 0.79 Total: 5.68 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.83 Total: 4.39 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -5.16 Total: -113.17 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.96 Total: -35.85 kcal Atomic # 14 Polarization: 53.77 SS G_CDS: 1.69 Total: 55.46 kcal Total: -86.68 3.19 -83.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148874362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.510 kcal (2) G-P(sol) polarization free energy of solvation -86.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds