Wall clock time and date at job start Tue Mar 31 2020 07:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42908 * 109.46863 * 144.59053 * 3 2 1 5 5 C 1.42896 * 113.99925 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47331 * 30.00001 * 5 4 3 7 7 C 1.52998 * 109.47202 * 269.99877 * 5 4 3 8 8 C 1.50701 * 109.46959 * 149.99651 * 5 4 3 9 9 O 1.21281 * 120.00112 * 5.00448 * 8 5 4 10 10 N 1.34776 * 120.00154 * 185.27175 * 8 5 4 11 11 C 1.46502 * 120.00362 * 179.72493 * 10 8 5 12 12 C 1.52997 * 109.47152 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47034 * 175.02773 * 12 11 10 14 14 C 1.53000 * 115.54973 * 278.03241 * 13 12 11 15 15 N 1.46500 * 109.47020 * 303.89974 * 14 13 12 16 16 C 1.36938 * 119.99948 * 175.59107 * 15 14 13 17 17 H 1.08000 * 120.00044 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00151 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99705 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00325 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47144 * 0.02562 * 20 18 16 22 22 H 1.48511 * 109.47178 * 119.99922 * 20 18 16 23 23 H 1.48500 * 109.47472 * 240.00062 * 20 18 16 24 24 C 1.52996 * 117.50258 * 132.32198 * 13 12 11 25 25 C 1.53000 * 60.00329 * 252.51186 * 24 13 12 26 26 H 4.38443 * 5.44422 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47635 * 24.59337 * 3 2 1 28 28 H 1.08999 * 109.47392 * 264.58380 * 3 2 1 29 29 H 1.09004 * 109.47001 * 180.02562 * 7 5 4 30 30 H 1.09001 * 109.47298 * 299.99526 * 7 5 4 31 31 H 1.08993 * 109.47132 * 60.00516 * 7 5 4 32 32 H 0.97003 * 119.99666 * 359.73564 * 10 8 5 33 33 H 1.08994 * 109.47044 * 300.00644 * 11 10 8 34 34 H 1.09006 * 109.46689 * 60.00267 * 11 10 8 35 35 H 1.08997 * 109.47000 * 295.02217 * 12 11 10 36 36 H 1.08994 * 109.47498 * 55.02736 * 12 11 10 37 37 H 1.09004 * 109.46912 * 63.89549 * 14 13 12 38 38 H 1.09000 * 109.47455 * 183.89673 * 14 13 12 39 39 H 0.97004 * 120.00030 * 355.58993 * 15 14 13 40 40 H 0.97000 * 120.00060 * 180.02562 * 19 18 16 41 41 H 1.09003 * 117.49836 * 0.02562 * 24 13 12 42 42 H 1.09003 * 117.49989 * 145.01444 * 24 13 12 43 43 H 1.09001 * 117.49508 * 252.51209 * 25 24 13 44 44 H 1.08993 * 117.50008 * 107.49005 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0990 -0.7807 5 6 4.5463 1.1920 -0.8456 6 1 4.9795 0.1949 -0.7667 7 6 5.0537 2.0612 0.3067 8 6 4.9498 1.8125 -2.1583 9 8 4.1013 2.2254 -2.9202 10 7 6.2534 1.9036 -2.4882 11 6 6.6455 2.5013 -3.7670 12 6 8.1701 2.4816 -3.8930 13 6 8.5740 2.9910 -5.2780 14 6 8.5056 1.9597 -6.4062 15 7 9.3292 0.7994 -6.0577 16 6 9.3511 -0.2962 -6.8790 17 1 8.7615 -0.3047 -7.7838 18 6 10.1319 -1.3955 -6.5490 19 7 10.8509 -1.3849 -5.4465 20 14 10.1613 -2.8902 -7.6689 21 1 9.2729 -2.6527 -8.8349 22 1 11.5485 -3.1256 -8.1440 23 1 9.6864 -4.0804 -6.9185 24 6 9.6826 4.0431 -5.3483 25 6 8.2314 4.4413 -5.6249 26 1 -1.0501 -0.0002 0.0004 27 1 3.0098 -0.9336 -0.4277 28 1 3.0093 0.0978 1.0230 29 1 6.1402 2.1324 0.2569 30 1 4.6206 3.0583 0.2278 31 1 4.7619 1.6123 1.2561 32 1 6.9321 1.5732 -1.8789 33 1 6.2062 1.9302 -4.5848 34 1 6.2902 3.5309 -3.8109 35 1 8.6062 3.1242 -3.1282 36 1 8.5325 1.4621 -3.7610 37 1 7.4722 1.6427 -6.5465 38 1 8.8775 2.4053 -7.3289 39 1 9.8591 0.8071 -5.2452 40 1 11.3968 -2.1529 -5.2161 41 1 10.1245 4.3721 -4.4078 42 1 10.3637 4.0005 -6.1983 43 1 7.9578 4.6607 -6.6570 44 1 7.7184 5.0325 -4.8665 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164519177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:44 Heat of formation + Delta-G solvation = 5.474416 kcal Electronic energy + Delta-G solvation = -23047.521256 eV Core-core repulsion = 19581.865294 eV Total energy + Delta-G solvation = -3465.655962 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05258 -38.47944 -37.81810 -34.79186 -33.94718 -33.72615 -31.82703 -30.78977 -29.56416 -27.39851 -26.01434 -24.71507 -22.99231 -22.69609 -21.76954 -20.53019 -19.02379 -18.45704 -17.32001 -17.16304 -17.00714 -16.07768 -15.63058 -15.40946 -15.03163 -14.80927 -14.40648 -14.23947 -13.77109 -13.51259 -13.20327 -13.07856 -12.78929 -12.63054 -12.52101 -12.32462 -11.87776 -11.70628 -11.42342 -11.13183 -10.95916 -10.93462 -10.85727 -10.82372 -10.58167 -10.13226 -10.04881 -9.92398 -9.68441 -9.52226 -9.32373 -8.98442 -8.84667 -6.90663 -5.77339 -3.04793 2.11702 2.53329 2.62042 3.01954 3.42891 3.49267 3.51039 3.74806 4.05687 4.26146 4.50714 4.60723 4.63520 4.76319 4.86264 5.02530 5.07597 5.09350 5.15694 5.25918 5.32885 5.37009 5.53884 5.60032 5.61846 5.69221 5.77168 5.77896 5.91353 6.16172 6.19210 6.21160 6.42990 6.45162 6.45877 6.59329 6.72591 6.77189 6.83820 7.29321 7.51291 7.71075 8.23957 8.42108 9.53834 10.11835 10.47577 11.45673 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.003281 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.817024 B = 8533.110758 C =10042.750791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C 0.169 3.831 4 O -0.351 6.351 5 C 0.070 3.930 6 H 0.092 0.908 7 C -0.171 4.171 8 C 0.512 3.488 9 O -0.521 6.521 10 N -0.723 5.723 11 C 0.127 3.873 12 C -0.092 4.092 13 C -0.118 4.118 14 C 0.187 3.813 15 N -0.728 5.728 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.166 4.166 25 C -0.178 4.178 26 H 0.222 0.778 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.253 0.747 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.233 7.717 14.060 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.192 4.192 3 C 0.093 3.907 4 O -0.270 6.270 5 C 0.009 3.991 6 H 0.110 0.890 7 C -0.228 4.228 8 C 0.297 3.703 9 O -0.395 6.395 10 N -0.377 5.377 11 C 0.004 3.996 12 C -0.129 4.129 13 C -0.119 4.119 14 C 0.060 3.940 15 N -0.372 5.372 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.203 4.203 25 C -0.215 4.215 26 H 0.239 0.761 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.218 0.782 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.021 8.040 13.246 19.611 hybrid contribution 0.621 -1.245 0.074 1.393 sum -11.399 6.795 13.320 18.803 Atomic orbital electron populations 1.24970 0.95887 0.98512 0.99647 1.22435 0.93808 1.01720 1.01187 1.19197 0.85079 0.90419 0.95968 1.88118 1.19036 1.48202 1.71629 1.21941 0.82862 1.00412 0.93915 0.89023 1.22245 1.01915 1.01228 0.97444 1.20235 0.82796 0.79752 0.87546 1.90733 1.50138 1.47075 1.51569 1.45951 1.06829 1.63077 1.21815 1.21365 0.95367 0.98149 0.84712 1.21263 0.93502 1.03367 0.94811 1.21564 1.03369 0.90440 0.96562 1.20185 0.94776 0.86839 0.92245 1.42314 1.53486 1.13622 1.27768 1.19287 1.21777 0.93058 1.02530 0.91211 1.24710 0.99970 0.98481 0.97893 1.69668 1.32893 1.30751 1.25009 0.86132 0.77192 0.83137 0.79853 1.20573 1.21927 1.21918 1.22995 0.91441 1.02956 1.02936 1.22967 0.98828 0.97522 1.02207 0.76109 0.90434 0.90582 0.90574 0.91006 0.91132 0.76536 0.90867 0.91759 0.91969 0.89167 0.95604 0.96435 0.78158 0.93664 0.89318 0.88708 0.88937 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -2.11 13.73 -37.12 -0.51 -2.62 16 3 C 0.17 1.62 6.22 34.37 0.21 1.83 16 4 O -0.35 -4.54 9.48 -55.09 -0.52 -5.06 16 5 C 0.07 0.74 3.13 -27.88 -0.09 0.65 16 6 H 0.09 0.73 7.79 -51.93 -0.40 0.33 16 7 C -0.17 -1.30 9.48 37.16 0.35 -0.95 16 8 C 0.51 7.28 7.18 -10.99 -0.08 7.20 16 9 O -0.52 -9.90 16.51 -14.30 -0.24 -10.14 16 10 N -0.72 -8.99 5.52 -60.29 -0.33 -9.32 16 11 C 0.13 1.81 5.49 -4.04 -0.02 1.79 16 12 C -0.09 -1.31 5.20 -26.73 -0.14 -1.45 16 13 C -0.12 -1.87 1.65 -154.51 -0.25 -2.12 16 14 C 0.19 3.77 6.15 -4.04 -0.02 3.74 16 15 N -0.73 -18.00 5.23 -59.91 -0.31 -18.31 16 16 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 20 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C -0.17 -2.37 9.87 -26.73 -0.26 -2.63 16 25 C -0.18 -2.35 9.58 -26.73 -0.26 -2.60 16 26 H 0.22 1.20 7.80 -54.08 -0.42 0.78 16 27 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 28 H 0.08 0.51 7.87 -51.93 -0.41 0.11 16 29 H 0.08 0.45 7.94 -51.93 -0.41 0.04 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.41 7.87 -51.93 -0.41 0.01 16 32 H 0.40 3.84 8.27 -40.82 -0.34 3.50 16 33 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 34 H 0.06 0.90 7.72 -51.93 -0.40 0.50 16 35 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.09 1.52 6.94 -51.93 -0.36 1.16 16 37 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 38 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 39 H 0.38 9.87 6.80 -40.82 -0.28 9.59 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.09 1.13 8.07 -51.93 -0.42 0.71 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -35.06 378.65 -7.90 -42.96 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.15 Total: 9.20 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -0.75 Total: -5.43 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.08 Total: -54.58 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.76 Total: -15.20 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.06 -7.90 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164519177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.432 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds