Wall clock time and date at job start Tue Mar 31 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42908 * 109.46863 * 144.59053 * 3 2 1 5 5 C 1.42896 * 113.99925 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.47331 * 30.00001 * 5 4 3 7 7 C 1.52998 * 109.47202 * 269.99877 * 5 4 3 8 8 C 1.50701 * 109.46959 * 149.99651 * 5 4 3 9 9 O 1.21281 * 120.00112 * 5.00448 * 8 5 4 10 10 N 1.34776 * 120.00154 * 185.27175 * 8 5 4 11 11 C 1.46502 * 120.00362 * 179.72493 * 10 8 5 12 12 C 1.52997 * 109.47152 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47034 * 175.02773 * 12 11 10 14 14 C 1.53000 * 115.54973 * 278.03241 * 13 12 11 15 15 N 1.46500 * 109.47020 * 303.89974 * 14 13 12 16 16 C 1.36938 * 119.99948 * 175.59107 * 15 14 13 17 17 H 1.08000 * 120.00044 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00151 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99705 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00325 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47144 * 0.02562 * 20 18 16 22 22 H 1.48511 * 109.47178 * 119.99922 * 20 18 16 23 23 H 1.48500 * 109.47472 * 240.00062 * 20 18 16 24 24 C 1.52996 * 117.50258 * 132.32198 * 13 12 11 25 25 C 1.53000 * 60.00329 * 252.51186 * 24 13 12 26 26 H 4.38443 * 5.44422 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47635 * 24.59337 * 3 2 1 28 28 H 1.08999 * 109.47392 * 264.58380 * 3 2 1 29 29 H 1.09004 * 109.47001 * 180.02562 * 7 5 4 30 30 H 1.09001 * 109.47298 * 299.99526 * 7 5 4 31 31 H 1.08993 * 109.47132 * 60.00516 * 7 5 4 32 32 H 0.97003 * 119.99666 * 359.73564 * 10 8 5 33 33 H 1.08994 * 109.47044 * 300.00644 * 11 10 8 34 34 H 1.09006 * 109.46689 * 60.00267 * 11 10 8 35 35 H 1.08997 * 109.47000 * 295.02217 * 12 11 10 36 36 H 1.08994 * 109.47498 * 55.02736 * 12 11 10 37 37 H 1.09004 * 109.46912 * 63.89549 * 14 13 12 38 38 H 1.09000 * 109.47455 * 183.89673 * 14 13 12 39 39 H 0.97004 * 120.00030 * 355.58993 * 15 14 13 40 40 H 0.97000 * 120.00060 * 180.02562 * 19 18 16 41 41 H 1.09003 * 117.49836 * 0.02562 * 24 13 12 42 42 H 1.09003 * 117.49989 * 145.01444 * 24 13 12 43 43 H 1.09001 * 117.49508 * 252.51209 * 25 24 13 44 44 H 1.08993 * 117.50008 * 107.49005 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.0990 -0.7807 5 6 4.5463 1.1920 -0.8456 6 1 4.9795 0.1949 -0.7667 7 6 5.0537 2.0612 0.3067 8 6 4.9498 1.8125 -2.1583 9 8 4.1013 2.2254 -2.9202 10 7 6.2534 1.9036 -2.4882 11 6 6.6455 2.5013 -3.7670 12 6 8.1701 2.4816 -3.8930 13 6 8.5740 2.9910 -5.2780 14 6 8.5056 1.9597 -6.4062 15 7 9.3292 0.7994 -6.0577 16 6 9.3511 -0.2962 -6.8790 17 1 8.7615 -0.3047 -7.7838 18 6 10.1319 -1.3955 -6.5490 19 7 10.8509 -1.3849 -5.4465 20 14 10.1613 -2.8902 -7.6689 21 1 9.2729 -2.6527 -8.8349 22 1 11.5485 -3.1256 -8.1440 23 1 9.6864 -4.0804 -6.9185 24 6 9.6826 4.0431 -5.3483 25 6 8.2314 4.4413 -5.6249 26 1 -1.0501 -0.0002 0.0004 27 1 3.0098 -0.9336 -0.4277 28 1 3.0093 0.0978 1.0230 29 1 6.1402 2.1324 0.2569 30 1 4.6206 3.0583 0.2278 31 1 4.7619 1.6123 1.2561 32 1 6.9321 1.5732 -1.8789 33 1 6.2062 1.9302 -4.5848 34 1 6.2902 3.5309 -3.8109 35 1 8.6062 3.1242 -3.1282 36 1 8.5325 1.4621 -3.7610 37 1 7.4722 1.6427 -6.5465 38 1 8.8775 2.4053 -7.3289 39 1 9.8591 0.8071 -5.2452 40 1 11.3968 -2.1529 -5.2161 41 1 10.1245 4.3721 -4.4078 42 1 10.3637 4.0005 -6.1983 43 1 7.9578 4.6607 -6.6570 44 1 7.7184 5.0325 -4.8665 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164519177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:43 Heat of formation + Delta-G solvation = -17.923769 kcal Electronic energy + Delta-G solvation = -23048.535877 eV Core-core repulsion = 19581.865294 eV Total energy + Delta-G solvation = -3466.670583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10695 -39.65531 -38.81507 -36.10783 -35.75639 -34.46154 -32.79329 -32.65924 -30.63010 -28.09503 -27.82184 -25.69702 -24.61813 -24.03186 -22.91471 -21.59320 -20.04489 -19.58888 -19.01413 -18.21958 -17.98100 -17.07951 -16.73961 -16.59385 -16.41539 -16.06498 -15.66985 -15.53027 -15.09078 -14.83751 -14.59434 -14.23629 -13.96068 -13.88352 -13.52596 -13.19944 -13.13970 -13.01080 -12.81876 -12.55451 -12.44260 -12.26164 -12.08410 -11.93775 -11.82479 -11.72579 -11.58100 -11.10719 -10.97056 -10.89457 -10.58570 -10.43881 -10.12872 -8.96522 -7.94719 -5.21782 1.33620 1.46696 1.47117 1.53712 1.56976 1.79785 2.07793 2.54533 2.90019 3.02193 3.38506 3.53791 3.67699 3.84816 3.85233 3.91780 3.99175 4.04302 4.11327 4.23988 4.26981 4.41198 4.44532 4.48896 4.64993 4.71186 4.80275 4.85172 4.94873 4.98734 4.99775 5.08958 5.18834 5.21481 5.28199 5.34888 5.39310 5.41535 5.49892 5.96724 6.28320 6.52654 6.57822 7.19360 7.35609 8.11006 8.37833 9.28562 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.003281 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.817024 B = 8533.110758 C =10042.750791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.240 4.240 3 C 0.163 3.837 4 O -0.387 6.387 5 C 0.072 3.928 6 H 0.120 0.880 7 C -0.164 4.164 8 C 0.506 3.494 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.135 3.865 12 C -0.077 4.077 13 C -0.141 4.141 14 C 0.187 3.813 15 N -0.734 5.734 16 C -0.245 4.245 17 H 0.068 0.932 18 C -0.070 4.070 19 N -0.963 5.963 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.161 4.161 25 C -0.154 4.154 26 H 0.253 0.747 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.416 0.584 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 8.198 15.442 20.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.240 4.240 3 C 0.088 3.912 4 O -0.307 6.307 5 C 0.011 3.989 6 H 0.137 0.863 7 C -0.221 4.221 8 C 0.292 3.708 9 O -0.457 6.457 10 N -0.365 5.365 11 C 0.011 3.989 12 C -0.114 4.114 13 C -0.142 4.142 14 C 0.061 3.939 15 N -0.377 5.377 16 C -0.377 4.377 17 H 0.086 0.914 18 C -0.263 4.263 19 N -0.614 5.614 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.198 4.198 25 C -0.191 4.191 26 H 0.269 0.731 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.254 0.746 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.998 8.531 14.639 20.761 hybrid contribution 0.557 -1.362 -0.402 1.526 sum -11.440 7.169 14.237 19.621 Atomic orbital electron populations 1.25885 0.96923 0.97044 0.98316 1.23162 0.95102 1.03150 1.02561 1.19466 0.84647 0.89890 0.97197 1.88064 1.20315 1.49613 1.72698 1.22085 0.82341 1.02015 0.92441 0.86266 1.22245 1.02965 0.99853 0.97058 1.21058 0.82477 0.78801 0.88428 1.90699 1.51651 1.49735 1.53622 1.45849 1.07012 1.62284 1.21315 1.21168 0.95243 0.97940 0.84550 1.21108 0.93164 1.02296 0.94871 1.21412 1.06281 0.90660 0.95823 1.20226 0.93050 0.86649 0.94011 1.42433 1.53887 1.14284 1.27130 1.19609 1.21214 0.94149 1.02696 0.91438 1.25453 1.00204 1.01151 0.99461 1.69796 1.33745 1.31378 1.26477 0.85154 0.77050 0.79705 0.78338 1.19662 1.21887 1.21872 1.23058 0.91635 1.01563 1.03576 1.23048 0.98050 0.94891 1.03125 0.73056 0.89476 0.87677 0.88527 0.92558 0.88825 0.74639 0.94352 0.91100 0.88852 0.91930 0.96830 0.96904 0.78883 0.93951 0.87148 0.89939 0.88703 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 19.25 74.32 1.43 -1.50 16 2 C -0.24 -5.17 13.73 31.13 0.43 -4.74 16 3 C 0.16 2.97 6.22 70.18 0.44 3.40 16 4 O -0.39 -9.89 9.48 -129.99 -1.23 -11.12 16 5 C 0.07 1.42 3.13 29.85 0.09 1.51 16 6 H 0.12 1.65 7.79 -2.39 -0.02 1.63 16 7 C -0.16 -2.11 9.48 71.98 0.68 -1.43 16 8 C 0.51 14.31 7.18 87.66 0.63 14.93 16 9 O -0.58 -22.71 16.51 15.96 0.26 -22.44 16 10 N -0.71 -17.12 5.52 -463.06 -2.56 -19.67 16 11 C 0.13 3.80 5.49 86.38 0.47 4.28 16 12 C -0.08 -2.11 5.20 30.59 0.16 -1.95 16 13 C -0.14 -4.32 1.65 -52.18 -0.09 -4.41 16 14 C 0.19 7.66 6.15 86.38 0.53 8.19 16 15 N -0.73 -36.99 5.23 -343.44 -1.80 -38.79 16 16 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 17 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 18 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 19 N -0.96 -57.59 13.06 21.65 0.28 -57.31 16 20 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 24 C -0.16 -4.27 9.87 30.59 0.30 -3.97 16 25 C -0.15 -3.71 9.58 30.60 0.29 -3.42 16 26 H 0.25 2.25 7.80 -4.41 -0.03 2.21 16 27 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 28 H 0.11 1.20 7.87 -2.39 -0.02 1.18 16 29 H 0.10 0.83 7.94 -2.38 -0.02 0.81 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.80 7.87 -2.39 -0.02 0.78 16 32 H 0.42 7.26 8.27 -92.71 -0.77 6.49 16 33 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 34 H 0.07 1.92 7.72 -2.38 -0.02 1.90 16 35 H 0.09 2.00 7.93 -2.39 -0.02 1.98 16 36 H 0.06 2.10 6.94 -2.39 -0.02 2.08 16 37 H 0.01 0.59 7.96 -2.38 -0.02 0.57 16 38 H 0.01 0.55 8.10 -2.39 -0.02 0.53 16 39 H 0.38 19.78 6.80 -92.71 -0.63 19.15 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.11 2.45 8.07 -2.39 -0.02 2.44 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.11 2.26 7.90 -2.39 -0.02 2.24 16 Total: -1.00 -78.26 378.65 3.26 -75.00 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.41 Total: 31.64 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 6.68 Total: -5.58 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -4.07 Total: -115.77 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.97 Total: -33.56 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -78.26 3.26 -75.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164519177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.076 kcal (2) G-P(sol) polarization free energy of solvation -78.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds