Wall clock time and date at job start Tue Mar 31 2020 07:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46866 * 207.70687 * 3 2 1 5 5 C 1.42901 * 114.00016 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47070 * 330.00089 * 5 4 3 7 7 C 1.53007 * 109.46983 * 90.00103 * 5 4 3 8 8 C 1.50696 * 109.47160 * 209.99987 * 5 4 3 9 9 O 1.21276 * 120.00080 * 355.00328 * 8 5 4 10 10 N 1.34784 * 119.99872 * 174.99878 * 8 5 4 11 11 C 1.46494 * 120.00146 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47542 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47216 * 175.45645 * 12 11 10 14 14 C 1.53006 * 115.55205 * 279.32207 * 13 12 11 15 15 N 1.46494 * 109.46925 * 294.95643 * 14 13 12 16 16 C 1.36940 * 119.99843 * 174.37105 * 15 14 13 17 17 H 1.08004 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00448 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99751 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00249 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47220 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47459 * 119.99779 * 20 18 16 23 23 H 1.48502 * 109.47349 * 240.00044 * 20 18 16 24 24 C 1.53007 * 117.49793 * 133.61770 * 13 12 11 25 25 C 1.52997 * 59.99844 * 252.50830 * 24 13 12 26 26 H 4.38441 * 5.44438 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.46845 * 87.70658 * 3 2 1 28 28 H 1.08997 * 109.47344 * 327.70847 * 3 2 1 29 29 H 1.08992 * 109.47210 * 60.00115 * 7 5 4 30 30 H 1.09000 * 109.46808 * 300.00094 * 7 5 4 31 31 H 1.09002 * 109.46623 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00066 * 0.02562 * 10 8 5 33 33 H 1.09006 * 109.47466 * 300.00338 * 11 10 8 34 34 H 1.09007 * 109.46936 * 59.99847 * 11 10 8 35 35 H 1.08997 * 109.46759 * 295.45864 * 12 11 10 36 36 H 1.09000 * 109.46862 * 55.45709 * 12 11 10 37 37 H 1.08996 * 109.46492 * 54.95257 * 14 13 12 38 38 H 1.08997 * 109.46900 * 174.95356 * 14 13 12 39 39 H 0.97001 * 120.00691 * 354.36380 * 15 14 13 40 40 H 0.96991 * 120.00046 * 180.02562 * 19 18 16 41 41 H 1.09001 * 117.49628 * 0.02562 * 24 13 12 42 42 H 1.09003 * 117.50054 * 145.01716 * 24 13 12 43 43 H 1.09002 * 117.49636 * 252.50629 * 25 24 13 44 44 H 1.09001 * 117.49881 * 107.48836 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1218 1.1937 0.6264 5 6 4.5463 1.2945 0.6784 6 1 4.9795 0.2958 0.7338 7 6 5.0538 2.0014 -0.5801 8 6 4.9498 2.0854 1.8960 9 8 4.1013 2.5966 2.5956 10 7 6.2537 2.2244 2.2076 11 6 6.6460 2.9928 3.3916 12 6 8.1710 2.9959 3.5155 13 6 8.5858 3.8908 4.6850 14 6 8.6160 5.3917 4.3891 15 7 9.6537 5.6724 3.3939 16 6 9.7901 6.9364 2.8849 17 1 9.1324 7.7261 3.2170 18 6 10.7737 7.2027 1.9423 19 7 11.5755 6.2403 1.5381 20 14 10.9594 8.9266 1.2475 21 1 9.9430 9.8193 1.8601 22 1 12.3187 9.4401 1.5537 23 1 10.7636 8.8910 -0.2241 24 6 9.6297 3.3413 5.6594 25 6 8.1663 3.4562 6.0906 26 1 -1.0501 -0.0004 0.0000 27 1 3.0094 -0.0403 -1.0268 28 1 3.0098 -0.8679 0.5490 29 1 4.6206 3.0001 -0.6355 30 1 4.7619 1.4294 -1.4608 31 1 6.1404 2.0779 -0.5406 32 1 6.9324 1.8158 1.6479 33 1 6.2876 4.0177 3.2949 34 1 6.2098 2.5378 4.2810 35 1 8.5231 1.9797 3.6928 36 1 8.6096 3.3767 2.5932 37 1 7.6466 5.7051 4.0016 38 1 8.8347 5.9384 5.3063 39 1 10.2442 4.9631 3.0955 40 1 12.2630 6.4264 0.8797 41 1 10.0211 2.3424 5.4669 42 1 10.3383 4.0490 6.0897 43 1 7.9121 4.2394 6.8048 44 1 7.5946 2.5326 6.1822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164519181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:47 Heat of formation + Delta-G solvation = 4.893494 kcal Electronic energy + Delta-G solvation = -22993.331368 eV Core-core repulsion = 19527.650216 eV Total energy + Delta-G solvation = -3465.681152 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08112 -38.48416 -37.84216 -34.83071 -33.92084 -33.75614 -31.83005 -30.76796 -29.59532 -27.42952 -26.00854 -24.71877 -22.99476 -22.72086 -21.72265 -20.55910 -19.05603 -18.48405 -17.35100 -17.19152 -16.97890 -16.09038 -15.65857 -15.43071 -14.94342 -14.92603 -14.40203 -14.32722 -13.67281 -13.57212 -13.20772 -13.07607 -12.79405 -12.62265 -12.49744 -12.22770 -11.90715 -11.69708 -11.45035 -11.12736 -10.99055 -10.95629 -10.86376 -10.85025 -10.58551 -10.13118 -10.07739 -9.90278 -9.69124 -9.54454 -9.31837 -9.01755 -8.85137 -6.89953 -5.76434 -3.03991 2.07851 2.49070 2.58540 2.99028 3.43404 3.49769 3.51557 3.72014 4.05962 4.22204 4.49161 4.61444 4.62493 4.72502 4.82086 5.01852 5.02402 5.09238 5.15648 5.30759 5.34776 5.40676 5.53724 5.57882 5.59370 5.67950 5.76380 5.88143 5.91871 6.16374 6.19183 6.22870 6.42375 6.43816 6.46483 6.55507 6.69782 6.77137 6.85149 7.25276 7.47929 7.71749 8.20814 8.42969 9.54704 10.12949 10.48820 11.46546 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015028 B = 0.003010 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.767170 B = 9301.220374 C =10565.939704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.193 4.193 3 C 0.170 3.830 4 O -0.351 6.351 5 C 0.072 3.928 6 H 0.089 0.911 7 C -0.173 4.173 8 C 0.512 3.488 9 O -0.520 6.520 10 N -0.724 5.724 11 C 0.126 3.874 12 C -0.090 4.090 13 C -0.119 4.119 14 C 0.187 3.813 15 N -0.727 5.727 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.164 4.164 25 C -0.178 4.178 26 H 0.222 0.778 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.400 0.600 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.027 0.973 38 H 0.017 0.983 39 H 0.385 0.615 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 -16.699 -1.418 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.011 3.989 6 H 0.107 0.893 7 C -0.231 4.231 8 C 0.296 3.704 9 O -0.394 6.394 10 N -0.377 5.377 11 C 0.003 3.997 12 C -0.128 4.128 13 C -0.120 4.120 14 C 0.059 3.941 15 N -0.372 5.372 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.202 4.202 25 C -0.215 4.215 26 H 0.239 0.761 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.045 0.955 38 H 0.035 0.965 39 H 0.218 0.782 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.089 -15.985 -0.850 21.325 hybrid contribution 0.738 0.348 -0.914 1.225 sum -13.351 -15.637 -1.764 20.637 Atomic orbital electron populations 1.24981 0.95898 0.98028 1.00002 1.22436 0.93817 1.01961 1.01056 1.19180 0.85088 0.88260 0.98055 1.88134 1.19096 1.39797 1.79937 1.21938 0.82770 0.99720 0.94493 0.89321 1.22267 1.02223 1.02474 0.96126 1.20251 0.82806 0.81425 0.85898 1.90735 1.50169 1.47143 1.51398 1.45957 1.06790 1.55302 1.29693 1.21382 0.95276 0.96502 0.86543 1.21250 0.93520 0.98590 0.99459 1.21563 1.03774 0.96850 0.89831 1.20189 0.92849 0.88375 0.92641 1.42298 1.37430 1.09786 1.47637 1.19289 1.12679 0.87396 1.17303 0.91216 1.24712 0.98666 0.97563 1.00120 1.69666 1.22337 1.31055 1.35236 0.86136 0.77378 0.84185 0.78641 1.20579 1.21924 1.21920 1.22964 0.91951 1.01856 1.03388 1.22976 0.98163 1.02659 0.97719 0.76100 0.90540 0.90661 0.90733 0.91146 0.90338 0.76555 0.90856 0.91697 0.91944 0.89388 0.95510 0.96536 0.78169 0.93661 0.89330 0.88603 0.88932 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 19.25 29.55 0.57 -0.96 16 2 C -0.19 -2.01 13.73 -37.12 -0.51 -2.52 16 3 C 0.17 1.51 6.22 34.37 0.21 1.72 16 4 O -0.35 -4.41 9.48 -55.09 -0.52 -4.93 16 5 C 0.07 0.73 3.13 -27.88 -0.09 0.65 16 6 H 0.09 0.59 7.79 -51.93 -0.40 0.18 16 7 C -0.17 -1.50 9.48 37.16 0.35 -1.15 16 8 C 0.51 7.08 7.18 -10.98 -0.08 7.00 16 9 O -0.52 -9.72 16.51 -14.30 -0.24 -9.96 16 10 N -0.72 -8.68 5.52 -60.29 -0.33 -9.01 16 11 C 0.13 1.75 5.51 -4.05 -0.02 1.73 16 12 C -0.09 -1.27 5.24 -26.73 -0.14 -1.41 16 13 C -0.12 -1.88 1.52 -154.51 -0.23 -2.11 16 14 C 0.19 3.77 6.10 -4.04 -0.02 3.74 16 15 N -0.73 -18.04 5.30 -59.91 -0.32 -18.36 16 16 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 19 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 20 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 C -0.16 -2.38 9.90 -26.73 -0.26 -2.64 16 25 C -0.18 -2.36 9.57 -26.73 -0.26 -2.61 16 26 H 0.22 1.10 7.80 -54.08 -0.42 0.68 16 27 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 28 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.08 0.59 7.92 -51.93 -0.41 0.18 16 32 H 0.40 3.64 8.26 -40.82 -0.34 3.30 16 33 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 34 H 0.06 0.89 7.80 -51.93 -0.41 0.49 16 35 H 0.06 0.75 7.94 -51.93 -0.41 0.33 16 36 H 0.09 1.44 7.64 -51.93 -0.40 1.04 16 37 H 0.03 0.56 7.69 -51.93 -0.40 0.16 16 38 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 39 H 0.38 9.94 7.46 -40.82 -0.30 9.64 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 42 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.05 7.98 -51.93 -0.41 0.63 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -35.18 379.57 -7.91 -43.10 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.20 Total: 8.92 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.73 Total: -5.81 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.07 Total: -54.45 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.76 Total: -14.89 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.18 -7.91 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164519181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.992 kcal (2) G-P(sol) polarization free energy of solvation -35.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds