Wall clock time and date at job start Tue Mar 31 2020 07:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46866 * 207.70687 * 3 2 1 5 5 C 1.42901 * 114.00016 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.47070 * 330.00089 * 5 4 3 7 7 C 1.53007 * 109.46983 * 90.00103 * 5 4 3 8 8 C 1.50696 * 109.47160 * 209.99987 * 5 4 3 9 9 O 1.21276 * 120.00080 * 355.00328 * 8 5 4 10 10 N 1.34784 * 119.99872 * 174.99878 * 8 5 4 11 11 C 1.46494 * 120.00146 * 180.02562 * 10 8 5 12 12 C 1.52998 * 109.47542 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47216 * 175.45645 * 12 11 10 14 14 C 1.53006 * 115.55205 * 279.32207 * 13 12 11 15 15 N 1.46494 * 109.46925 * 294.95643 * 14 13 12 16 16 C 1.36940 * 119.99843 * 174.37105 * 15 14 13 17 17 H 1.08004 * 119.99656 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00448 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99751 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00249 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47220 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47459 * 119.99779 * 20 18 16 23 23 H 1.48502 * 109.47349 * 240.00044 * 20 18 16 24 24 C 1.53007 * 117.49793 * 133.61770 * 13 12 11 25 25 C 1.52997 * 59.99844 * 252.50830 * 24 13 12 26 26 H 4.38441 * 5.44438 * 180.02562 * 4 1 2 27 27 H 1.08999 * 109.46845 * 87.70658 * 3 2 1 28 28 H 1.08997 * 109.47344 * 327.70847 * 3 2 1 29 29 H 1.08992 * 109.47210 * 60.00115 * 7 5 4 30 30 H 1.09000 * 109.46808 * 300.00094 * 7 5 4 31 31 H 1.09002 * 109.46623 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00066 * 0.02562 * 10 8 5 33 33 H 1.09006 * 109.47466 * 300.00338 * 11 10 8 34 34 H 1.09007 * 109.46936 * 59.99847 * 11 10 8 35 35 H 1.08997 * 109.46759 * 295.45864 * 12 11 10 36 36 H 1.09000 * 109.46862 * 55.45709 * 12 11 10 37 37 H 1.08996 * 109.46492 * 54.95257 * 14 13 12 38 38 H 1.08997 * 109.46900 * 174.95356 * 14 13 12 39 39 H 0.97001 * 120.00691 * 354.36380 * 15 14 13 40 40 H 0.96991 * 120.00046 * 180.02562 * 19 18 16 41 41 H 1.09001 * 117.49628 * 0.02562 * 24 13 12 42 42 H 1.09003 * 117.50054 * 145.01716 * 24 13 12 43 43 H 1.09002 * 117.49636 * 252.50629 * 25 24 13 44 44 H 1.09001 * 117.49881 * 107.48836 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1218 1.1937 0.6264 5 6 4.5463 1.2945 0.6784 6 1 4.9795 0.2958 0.7338 7 6 5.0538 2.0014 -0.5801 8 6 4.9498 2.0854 1.8960 9 8 4.1013 2.5966 2.5956 10 7 6.2537 2.2244 2.2076 11 6 6.6460 2.9928 3.3916 12 6 8.1710 2.9959 3.5155 13 6 8.5858 3.8908 4.6850 14 6 8.6160 5.3917 4.3891 15 7 9.6537 5.6724 3.3939 16 6 9.7901 6.9364 2.8849 17 1 9.1324 7.7261 3.2170 18 6 10.7737 7.2027 1.9423 19 7 11.5755 6.2403 1.5381 20 14 10.9594 8.9266 1.2475 21 1 9.9430 9.8193 1.8601 22 1 12.3187 9.4401 1.5537 23 1 10.7636 8.8910 -0.2241 24 6 9.6297 3.3413 5.6594 25 6 8.1663 3.4562 6.0906 26 1 -1.0501 -0.0004 0.0000 27 1 3.0094 -0.0403 -1.0268 28 1 3.0098 -0.8679 0.5490 29 1 4.6206 3.0001 -0.6355 30 1 4.7619 1.4294 -1.4608 31 1 6.1404 2.0779 -0.5406 32 1 6.9324 1.8158 1.6479 33 1 6.2876 4.0177 3.2949 34 1 6.2098 2.5378 4.2810 35 1 8.5231 1.9797 3.6928 36 1 8.6096 3.3767 2.5932 37 1 7.6466 5.7051 4.0016 38 1 8.8347 5.9384 5.3063 39 1 10.2442 4.9631 3.0955 40 1 12.2630 6.4264 0.8797 41 1 10.0211 2.3424 5.4669 42 1 10.3383 4.0490 6.0897 43 1 7.9121 4.2394 6.8048 44 1 7.5946 2.5326 6.1822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164519181.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:46 Heat of formation + Delta-G solvation = -18.750806 kcal Electronic energy + Delta-G solvation = -22994.356662 eV Core-core repulsion = 19527.650216 eV Total energy + Delta-G solvation = -3466.706446 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10516 -39.64825 -38.81225 -36.12511 -35.73360 -34.45219 -32.77677 -32.66907 -30.64950 -28.08341 -27.81933 -25.71077 -24.62491 -24.03000 -22.88954 -21.59130 -20.05509 -19.59442 -18.99336 -18.21630 -17.98158 -17.00518 -16.84599 -16.53942 -16.37954 -15.98919 -15.82599 -15.47963 -15.12649 -14.82274 -14.56211 -14.31552 -13.90787 -13.82892 -13.53173 -13.21063 -13.16538 -13.00510 -12.81821 -12.54860 -12.46975 -12.26215 -12.11365 -11.93304 -11.81628 -11.72235 -11.57319 -11.09567 -10.96044 -10.88094 -10.60221 -10.44205 -10.12792 -8.96817 -7.94753 -5.21910 1.34275 1.46539 1.46917 1.53531 1.56829 1.80847 2.08455 2.54223 2.90125 3.03521 3.38188 3.54779 3.68008 3.84521 3.86164 3.91210 3.98891 4.03411 4.10240 4.25167 4.26256 4.42465 4.46660 4.49915 4.64865 4.67853 4.77867 4.85104 4.94414 4.98134 5.00665 5.09287 5.17861 5.20860 5.28598 5.35201 5.39304 5.41841 5.49675 5.98658 6.28226 6.53218 6.58895 7.19909 7.35469 8.11131 8.37869 9.28568 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015028 B = 0.003010 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.767170 B = 9301.220374 C =10565.939704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.389 6.389 5 C 0.077 3.923 6 H 0.133 0.867 7 C -0.170 4.170 8 C 0.505 3.495 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.133 3.867 12 C -0.075 4.075 13 C -0.140 4.140 14 C 0.187 3.813 15 N -0.734 5.734 16 C -0.244 4.244 17 H 0.068 0.932 18 C -0.071 4.071 19 N -0.964 5.964 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.162 4.162 25 C -0.153 4.153 26 H 0.252 0.748 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.417 0.583 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.011 0.989 39 H 0.378 0.622 40 H 0.252 0.748 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 -18.465 -1.673 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.239 4.239 3 C 0.088 3.912 4 O -0.309 6.309 5 C 0.016 3.984 6 H 0.150 0.850 7 C -0.227 4.227 8 C 0.292 3.708 9 O -0.457 6.457 10 N -0.365 5.365 11 C 0.010 3.990 12 C -0.113 4.113 13 C -0.141 4.141 14 C 0.060 3.940 15 N -0.377 5.377 16 C -0.376 4.376 17 H 0.086 0.914 18 C -0.263 4.263 19 N -0.615 5.615 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.199 4.199 25 C -0.190 4.190 26 H 0.268 0.732 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.254 0.746 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.029 0.971 39 H 0.210 0.790 40 H 0.060 0.940 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.272 -17.768 -1.105 22.817 hybrid contribution 0.729 0.903 -0.782 1.399 sum -13.544 -16.865 -1.887 21.712 Atomic orbital electron populations 1.25880 0.96958 0.96697 0.98882 1.23200 0.95167 1.03250 1.02257 1.19495 0.84494 0.87649 0.99543 1.88082 1.20305 1.41773 1.80690 1.22037 0.82340 1.01242 0.92747 0.84979 1.22278 1.02782 1.01177 0.96497 1.21071 0.82490 0.80821 0.86424 1.90702 1.51711 1.49692 1.53579 1.45844 1.06967 1.54422 1.29240 1.21179 0.95213 0.95027 0.87599 1.21098 0.93059 0.99619 0.97539 1.21415 1.06495 0.94218 0.91954 1.20236 0.90809 0.91960 0.90973 1.42416 1.38253 1.08658 1.48343 1.19613 1.12297 0.88607 1.17106 0.91424 1.25458 0.98804 1.01146 1.00908 1.69796 1.22959 1.32772 1.35930 0.85152 0.77233 0.80162 0.77696 1.19662 1.21890 1.21852 1.23012 0.92231 1.02358 1.02308 1.23057 0.97389 1.03431 0.95131 0.73203 0.88040 0.88598 0.93559 0.88526 0.89032 0.74595 0.94250 0.91063 0.88817 0.91977 0.96636 0.97080 0.78967 0.93954 0.87129 0.90247 0.88804 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 19.25 74.32 1.43 -1.37 16 2 C -0.24 -4.80 13.73 31.13 0.43 -4.37 16 3 C 0.16 2.63 6.22 70.18 0.44 3.07 16 4 O -0.39 -9.50 9.48 -129.99 -1.23 -10.73 16 5 C 0.08 1.44 3.13 29.85 0.09 1.53 16 6 H 0.13 1.29 7.79 -2.39 -0.02 1.27 16 7 C -0.17 -2.67 9.48 71.98 0.68 -1.99 16 8 C 0.51 13.80 7.18 87.65 0.63 14.43 16 9 O -0.58 -22.23 16.51 15.97 0.26 -21.96 16 10 N -0.71 -16.35 5.52 -463.06 -2.55 -18.91 16 11 C 0.13 3.65 5.51 86.38 0.48 4.13 16 12 C -0.08 -2.03 5.24 30.59 0.16 -1.87 16 13 C -0.14 -4.28 1.52 -52.18 -0.08 -4.36 16 14 C 0.19 7.66 6.10 86.38 0.53 8.18 16 15 N -0.73 -37.10 5.30 -343.46 -1.82 -38.92 16 16 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 17 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 18 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 19 N -0.96 -57.97 13.06 21.65 0.28 -57.69 16 20 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 C -0.16 -4.39 9.90 30.60 0.30 -4.09 16 25 C -0.15 -3.70 9.57 30.59 0.29 -3.41 16 26 H 0.25 2.04 7.80 -4.41 -0.03 2.00 16 27 H 0.10 1.05 7.87 -2.39 -0.02 1.03 16 28 H 0.10 1.08 8.09 -2.39 -0.02 1.06 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.02 7.87 -2.39 -0.02 1.00 16 31 H 0.09 1.18 7.92 -2.39 -0.02 1.16 16 32 H 0.42 6.74 8.26 -92.71 -0.77 5.98 16 33 H 0.04 1.35 7.69 -2.38 -0.02 1.33 16 34 H 0.07 1.88 7.80 -2.38 -0.02 1.86 16 35 H 0.09 1.95 7.94 -2.39 -0.02 1.93 16 36 H 0.06 2.01 7.64 -2.39 -0.02 1.99 16 37 H 0.02 0.67 7.69 -2.39 -0.02 0.66 16 38 H 0.01 0.48 8.09 -2.39 -0.02 0.46 16 39 H 0.38 19.90 7.46 -92.71 -0.69 19.21 16 40 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.11 2.51 8.08 -2.39 -0.02 2.49 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.11 2.26 7.98 -2.39 -0.02 2.24 16 Total: -1.00 -78.88 379.57 3.19 -75.69 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.47 Total: 30.71 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 6.69 Total: -6.66 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -4.09 Total: -115.52 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.97 Total: -32.69 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -78.88 3.19 -75.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164519181.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.941 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds