Wall clock time and date at job start Tue Mar 31 2020 07:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47294 * 2 1 4 4 C 1.53001 * 109.47081 * 120.00256 * 2 1 3 5 5 C 1.52993 * 109.46873 * 185.00009 * 4 2 1 6 6 C 1.53007 * 109.47144 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47097 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46710 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99668 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00449 * 0.02562 * 9 8 7 11 11 C 1.38820 * 119.99901 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99750 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00078 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47468 * 89.99765 * 13 11 9 15 15 H 1.48496 * 109.47302 * 210.00001 * 13 11 9 16 16 H 1.48507 * 109.46849 * 329.99799 * 13 11 9 17 17 N 1.46503 * 109.46918 * 239.99989 * 2 1 3 18 18 C 1.34777 * 119.99907 * 84.99832 * 17 2 1 19 19 O 1.21284 * 119.99941 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99946 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.46955 * 180.02562 * 20 18 17 22 22 C 1.41381 * 126.57424 * 90.00355 * 21 20 18 23 23 C 1.34520 * 106.83580 * 179.72986 * 22 21 20 24 24 O 1.34302 * 108.42210 * 0.26485 * 23 22 21 25 25 C 1.34302 * 109.47622 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47032 * 300.00111 * 1 2 3 28 28 H 1.08999 * 109.46801 * 59.99692 * 1 2 3 29 29 H 1.09005 * 109.46880 * 304.99951 * 4 2 1 30 30 H 1.09003 * 109.47382 * 64.99836 * 4 2 1 31 31 H 1.09001 * 109.47201 * 299.99169 * 5 4 2 32 32 H 1.08992 * 109.47922 * 60.00046 * 5 4 2 33 33 H 1.09005 * 109.46811 * 300.00065 * 6 5 4 34 34 H 1.09006 * 109.46759 * 59.99492 * 6 5 4 35 35 H 1.08992 * 109.47556 * 299.99631 * 7 6 5 36 36 H 1.08998 * 109.47368 * 60.00659 * 7 6 5 37 37 H 0.97002 * 120.00365 * 0.02562 * 8 7 6 38 38 H 0.97001 * 119.99613 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99724 * 265.00504 * 17 2 1 40 40 H 1.09007 * 109.46960 * 60.00376 * 20 18 17 41 41 H 1.08999 * 109.46970 * 300.00269 * 20 18 17 42 42 H 1.08002 * 126.58570 * 359.97438 * 22 21 20 43 43 H 1.08004 * 125.78733 * 180.22473 * 23 22 21 44 44 H 1.07999 * 125.79201 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5997 -1.2267 2.6273 8 7 6.0879 -1.9163 3.8241 9 6 7.4299 -1.9525 4.0939 10 1 8.1285 -1.4723 3.4246 11 6 7.8926 -2.6064 5.2276 12 7 7.0413 -3.1911 6.0435 13 14 9.7233 -2.6551 5.5960 14 1 10.0927 -1.4804 6.4258 15 1 10.0469 -3.9030 6.3329 16 1 10.4856 -2.6206 4.3220 17 7 2.0184 -0.6906 -1.1962 18 6 2.1470 -0.0183 -2.3572 19 8 1.8590 1.1586 -2.4115 20 6 2.6498 -0.7285 -3.5875 21 6 2.7009 0.2400 -4.7410 22 6 3.7958 1.0555 -5.1084 23 6 3.4142 1.7551 -6.1921 24 8 2.1514 1.4127 -6.4953 25 6 1.7127 0.4966 -5.6167 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7716 1.2056 31 1 3.9994 -1.0729 0.4259 32 1 3.8533 0.4368 1.3573 33 1 3.6402 -0.8742 3.4507 34 1 3.7864 -2.3844 2.5200 35 1 6.0340 -1.6868 1.7398 36 1 5.8885 -0.1765 2.6704 37 1 5.4605 -2.3473 4.4254 38 1 7.3647 -3.6484 6.8355 39 1 2.2489 -1.6318 -1.1526 40 1 1.9776 -1.5509 -3.8326 41 1 3.6492 -1.1203 -3.3979 42 1 4.7559 1.1043 -4.6161 43 1 4.0203 2.4712 -6.7272 44 1 0.7337 0.0404 -5.6157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170348659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:30 Heat of formation + Delta-G solvation = -35.215272 kcal Electronic energy + Delta-G solvation = -22546.395634 eV Core-core repulsion = 19078.975235 eV Total energy + Delta-G solvation = -3467.420399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.76812 -39.95161 -37.02736 -35.26676 -34.19936 -33.24624 -31.72626 -30.62142 -30.11837 -27.90096 -27.44465 -24.24221 -22.51150 -21.83663 -21.55346 -20.77797 -20.61580 -20.23998 -17.75610 -17.32252 -16.99980 -16.33705 -15.98963 -15.49378 -15.12025 -14.81141 -14.69017 -14.03499 -13.97583 -13.64016 -13.31091 -13.17345 -13.00894 -12.97557 -12.80160 -12.72557 -12.29192 -11.83220 -11.76086 -11.44252 -11.25590 -10.99016 -10.80932 -10.70374 -10.41612 -10.30566 -10.20417 -9.98650 -9.75170 -9.65905 -9.19980 -8.85269 -8.76018 -6.89805 -5.75006 -3.03330 1.54932 2.29970 2.50948 2.91242 3.16183 3.44460 3.49240 3.51141 4.44248 4.50638 4.51687 4.63612 4.71796 4.81190 4.93757 4.99296 5.10737 5.21082 5.26093 5.41677 5.44465 5.46424 5.55522 5.62432 5.70233 5.75506 5.79270 5.90043 5.92295 5.95952 6.10903 6.23563 6.25062 6.31086 6.38916 6.41649 6.47184 6.87626 6.90188 6.94151 7.35468 7.71369 8.10158 8.44485 9.55132 10.14476 10.49049 11.48142 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002325 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.876246 B =12040.300828 C =13248.545917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.087 0.913 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.935 5.935 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.724 5.724 18 C 0.513 3.487 19 O -0.533 6.533 20 C -0.073 4.073 21 C -0.162 4.162 22 C -0.198 4.198 23 C -0.045 4.045 24 O -0.178 6.178 25 C -0.029 4.029 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.400 0.600 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.147 0.853 43 H 0.201 0.799 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.663 5.158 -23.002 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.105 0.895 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.584 5.584 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.377 5.377 18 C 0.299 3.701 19 O -0.409 6.409 20 C -0.113 4.113 21 C -0.164 4.164 22 C -0.217 4.217 23 C -0.112 4.112 24 O -0.074 6.074 25 C -0.097 4.097 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.235 0.765 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.165 0.835 43 H 0.218 0.782 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.856 6.160 -23.285 28.299 hybrid contribution 1.113 -0.747 0.780 1.552 sum -13.742 5.412 -22.505 26.919 Atomic orbital electron populations 1.22170 0.95495 1.01992 1.02413 1.21026 0.93654 0.97722 0.83957 0.89468 1.21936 0.96862 1.00912 0.96752 1.21514 0.93975 1.01071 0.98610 1.21731 0.97237 1.00265 0.97124 1.20647 0.91021 0.95316 0.90532 1.42397 1.05343 1.65043 1.25137 1.19256 0.83931 1.28339 1.05429 0.91238 1.24758 0.97760 1.00995 0.97724 1.69664 1.32774 1.40839 1.15108 0.86172 0.85054 0.77028 0.77859 1.21715 1.21755 1.20772 1.46133 1.67718 1.14132 1.09711 1.20578 0.77614 0.87472 0.84403 1.90717 1.49378 1.15921 1.84930 1.20018 1.04038 0.96999 0.90236 1.19789 0.95085 1.02529 0.98985 1.21707 1.00811 1.00165 0.99038 1.23967 0.83979 1.03328 0.99926 1.84054 1.27684 1.47805 1.47815 1.23749 0.99777 0.94440 0.91752 0.92518 0.91588 0.92370 0.90276 0.91348 0.92129 0.92043 0.92065 0.92131 0.96637 0.96596 0.78348 0.93546 0.76519 0.88114 0.87720 0.83518 0.78196 0.78461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.14 1.36 2.58 -67.92 -0.17 1.19 16 3 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 4 C -0.13 -1.22 4.75 -26.73 -0.13 -1.35 16 5 C -0.11 -1.39 5.10 -26.73 -0.14 -1.52 16 6 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 7 C 0.15 3.14 6.26 -4.04 -0.03 3.11 16 8 N -0.74 -19.24 5.60 -59.91 -0.34 -19.58 16 9 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 12 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 13 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.72 -6.29 4.53 -53.80 -0.24 -6.53 16 18 C 0.51 5.36 7.79 -10.98 -0.09 5.28 16 19 O -0.53 -7.86 15.70 5.55 0.09 -7.78 16 20 C -0.07 -0.55 6.22 -29.03 -0.18 -0.73 16 21 C -0.16 -1.56 4.66 -104.74 -0.49 -2.05 16 22 C -0.20 -1.92 10.87 -39.70 -0.43 -2.35 16 23 C -0.04 -0.39 12.09 29.42 0.36 -0.03 16 24 O -0.18 -1.76 10.65 5.71 0.06 -1.70 16 25 C -0.03 -0.26 12.01 29.42 0.35 0.09 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 38 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.40 2.56 8.60 -40.82 -0.35 2.21 16 40 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.20 1.00 8.06 -52.48 -0.42 0.58 16 44 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -35.61 372.65 -7.44 -43.05 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.35 Total: 6.40 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -0.98 Total: -9.17 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.15 Total: -54.12 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.15 Total: -9.48 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.61 -7.44 -43.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170348659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.837 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds