Wall clock time and date at job start Tue Mar 31 2020 07:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47294 * 2 1 4 4 C 1.53001 * 109.47081 * 120.00256 * 2 1 3 5 5 C 1.52993 * 109.46873 * 185.00009 * 4 2 1 6 6 C 1.53007 * 109.47144 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47097 * 179.97438 * 6 5 4 8 8 N 1.46506 * 109.46710 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99668 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00449 * 0.02562 * 9 8 7 11 11 C 1.38820 * 119.99901 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99750 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00078 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47468 * 89.99765 * 13 11 9 15 15 H 1.48496 * 109.47302 * 210.00001 * 13 11 9 16 16 H 1.48507 * 109.46849 * 329.99799 * 13 11 9 17 17 N 1.46503 * 109.46918 * 239.99989 * 2 1 3 18 18 C 1.34777 * 119.99907 * 84.99832 * 17 2 1 19 19 O 1.21284 * 119.99941 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99946 * 179.97438 * 18 17 2 21 21 C 1.50701 * 109.46955 * 180.02562 * 20 18 17 22 22 C 1.41381 * 126.57424 * 90.00355 * 21 20 18 23 23 C 1.34520 * 106.83580 * 179.72986 * 22 21 20 24 24 O 1.34302 * 108.42210 * 0.26485 * 23 22 21 25 25 C 1.34302 * 109.47622 * 359.97438 * 24 23 22 26 26 H 1.08993 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47032 * 300.00111 * 1 2 3 28 28 H 1.08999 * 109.46801 * 59.99692 * 1 2 3 29 29 H 1.09005 * 109.46880 * 304.99951 * 4 2 1 30 30 H 1.09003 * 109.47382 * 64.99836 * 4 2 1 31 31 H 1.09001 * 109.47201 * 299.99169 * 5 4 2 32 32 H 1.08992 * 109.47922 * 60.00046 * 5 4 2 33 33 H 1.09005 * 109.46811 * 300.00065 * 6 5 4 34 34 H 1.09006 * 109.46759 * 59.99492 * 6 5 4 35 35 H 1.08992 * 109.47556 * 299.99631 * 7 6 5 36 36 H 1.08998 * 109.47368 * 60.00659 * 7 6 5 37 37 H 0.97002 * 120.00365 * 0.02562 * 8 7 6 38 38 H 0.97001 * 119.99613 * 179.97438 * 12 11 9 39 39 H 0.96996 * 119.99724 * 265.00504 * 17 2 1 40 40 H 1.09007 * 109.46960 * 60.00376 * 20 18 17 41 41 H 1.08999 * 109.46970 * 300.00269 * 20 18 17 42 42 H 1.08002 * 126.58570 * 359.97438 * 22 21 20 43 43 H 1.08004 * 125.78733 * 180.22473 * 23 22 21 44 44 H 1.07999 * 125.79201 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0748 -1.3341 2.5632 7 6 5.5997 -1.2267 2.6273 8 7 6.0879 -1.9163 3.8241 9 6 7.4299 -1.9525 4.0939 10 1 8.1285 -1.4723 3.4246 11 6 7.8926 -2.6064 5.2276 12 7 7.0413 -3.1911 6.0435 13 14 9.7233 -2.6551 5.5960 14 1 10.0927 -1.4804 6.4258 15 1 10.0469 -3.9030 6.3329 16 1 10.4856 -2.6206 4.3220 17 7 2.0184 -0.6906 -1.1962 18 6 2.1470 -0.0183 -2.3572 19 8 1.8590 1.1586 -2.4115 20 6 2.6498 -0.7285 -3.5875 21 6 2.7009 0.2400 -4.7410 22 6 3.7958 1.0555 -5.1084 23 6 3.4142 1.7551 -6.1921 24 8 2.1514 1.4127 -6.4953 25 6 1.7127 0.4966 -5.6167 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7716 1.2056 31 1 3.9994 -1.0729 0.4259 32 1 3.8533 0.4368 1.3573 33 1 3.6402 -0.8742 3.4507 34 1 3.7864 -2.3844 2.5200 35 1 6.0340 -1.6868 1.7398 36 1 5.8885 -0.1765 2.6704 37 1 5.4605 -2.3473 4.4254 38 1 7.3647 -3.6484 6.8355 39 1 2.2489 -1.6318 -1.1526 40 1 1.9776 -1.5509 -3.8326 41 1 3.6492 -1.1203 -3.3979 42 1 4.7559 1.1043 -4.6161 43 1 4.0203 2.4712 -6.7272 44 1 0.7337 0.0404 -5.6157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170348659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:29 Heat of formation + Delta-G solvation = -58.909714 kcal Electronic energy + Delta-G solvation = -22547.423102 eV Core-core repulsion = 19078.975235 eV Total energy + Delta-G solvation = -3468.447867 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.42550 -40.76781 -38.05556 -36.82354 -34.90152 -34.75283 -33.01394 -31.89673 -30.96113 -28.83009 -28.53867 -25.93114 -23.86109 -22.62533 -22.46333 -22.02103 -21.50838 -20.93001 -19.13183 -18.42692 -18.07493 -17.14414 -16.72462 -16.66227 -16.32790 -16.13836 -15.50485 -15.41583 -15.29271 -14.78742 -14.57960 -14.33791 -14.09666 -13.80865 -13.65734 -13.41936 -13.20675 -12.95877 -12.89396 -12.84251 -12.46998 -12.40893 -12.24703 -12.15524 -11.88445 -11.80383 -11.48827 -11.38460 -11.02325 -10.94549 -10.49047 -10.00682 -9.41006 -9.02261 -7.97272 -5.26568 0.89708 1.46281 1.48515 1.57055 1.61378 1.73237 2.31636 2.46945 2.54864 3.36013 3.61044 3.81743 3.96576 4.03573 4.06334 4.08580 4.14993 4.23789 4.36388 4.43492 4.57692 4.61318 4.65278 4.66350 4.79194 4.82744 4.88357 4.94383 4.99818 5.02937 5.12380 5.14773 5.27273 5.31634 5.33513 5.45565 5.46082 5.53185 5.60402 5.65165 6.21557 6.25790 6.66357 7.31348 7.36768 8.08066 8.31469 9.26386 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.002325 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.876246 B =12040.300828 C =13248.545917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.061 0.939 4 C -0.116 4.116 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.750 5.750 9 C -0.250 4.250 10 H 0.073 0.927 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.269 1.269 17 N -0.714 5.714 18 C 0.511 3.489 19 O -0.583 6.583 20 C -0.067 4.067 21 C -0.182 4.182 22 C -0.226 4.226 23 C -0.048 4.048 24 O -0.192 6.192 25 C -0.040 4.040 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.019 0.981 36 H 0.011 0.989 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.415 0.585 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.151 0.849 43 H 0.230 0.770 44 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 4.456 -23.918 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.142 4.142 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.392 5.392 9 C -0.382 4.382 10 H 0.091 0.909 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.213 1.213 15 H -0.219 1.219 16 H -0.194 1.194 17 N -0.367 5.367 18 C 0.299 3.701 19 O -0.462 6.462 20 C -0.106 4.106 21 C -0.184 4.184 22 C -0.245 4.245 23 C -0.115 4.115 24 O -0.088 6.088 25 C -0.107 4.107 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.029 0.971 37 H 0.206 0.794 38 H 0.061 0.939 39 H 0.252 0.748 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.168 0.832 43 H 0.247 0.753 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -14.981 5.444 -24.229 29.002 hybrid contribution 1.145 -0.487 1.035 1.618 sum -13.836 4.956 -23.194 27.458 Atomic orbital electron populations 1.22102 0.94492 1.02852 1.01979 1.20901 0.94360 0.96514 0.84303 0.92037 1.21835 0.94666 1.02036 0.96845 1.21417 0.95860 0.99974 0.96990 1.21605 0.93704 1.01005 0.98714 1.20858 0.94284 0.94198 0.88487 1.42643 1.04547 1.65451 1.26590 1.19657 0.85334 1.27736 1.05443 0.90876 1.25627 1.02337 1.01198 0.97812 1.69816 1.34721 1.41927 1.15553 0.85101 0.79769 0.76734 0.77931 1.21349 1.21853 1.19395 1.46064 1.66889 1.14725 1.09012 1.21080 0.76715 0.86938 0.85354 1.90698 1.51693 1.18129 1.85716 1.20080 1.05432 0.97004 0.88122 1.20148 0.95259 1.03172 0.99786 1.21998 1.01416 1.01122 0.99925 1.24584 0.83742 1.03301 0.99823 1.84052 1.28241 1.48190 1.48324 1.24321 1.00744 0.94185 0.91437 0.90932 0.90927 0.93952 0.89890 0.89575 0.91320 0.92964 0.92581 0.91716 0.96288 0.97072 0.79404 0.93879 0.74844 0.84989 0.86320 0.83172 0.75337 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 2 C 0.14 2.58 2.58 44.99 0.12 2.70 16 3 H 0.06 1.46 7.58 -2.39 -0.02 1.44 16 4 C -0.12 -1.98 4.75 30.59 0.15 -1.83 16 5 C -0.10 -2.37 5.10 30.59 0.16 -2.21 16 6 C -0.11 -3.41 5.33 30.60 0.16 -3.24 16 7 C 0.15 6.01 6.26 86.38 0.54 6.55 16 8 N -0.75 -39.25 5.60 -343.45 -1.92 -41.18 16 9 C -0.25 -14.35 9.99 84.04 0.84 -13.51 16 10 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 11 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 12 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 13 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 14 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 15 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 17 N -0.71 -11.06 4.53 -442.52 -2.00 -13.06 16 18 C 0.51 10.12 7.79 87.66 0.68 10.80 16 19 O -0.58 -17.27 15.70 -3.04 -0.05 -17.32 16 20 C -0.07 -0.89 6.22 29.10 0.18 -0.71 16 21 C -0.18 -3.35 4.66 -19.94 -0.09 -3.44 16 22 C -0.23 -4.31 10.87 22.19 0.24 -4.07 16 23 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 24 O -0.19 -3.71 10.65 -2.47 -0.03 -3.74 16 25 C -0.04 -0.68 12.01 66.97 0.80 0.13 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.45 7.75 -2.39 -0.02 1.44 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.37 20.57 7.67 -92.71 -0.71 19.86 16 38 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.41 4.10 8.60 -92.71 -0.80 3.30 16 40 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.23 2.03 8.06 -2.91 -0.02 2.01 16 44 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -77.23 372.65 3.52 -73.71 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.52 Total: 27.39 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 5.74 Total: -14.69 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -3.65 Total: -113.91 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.07 Total: -21.05 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.23 3.52 -73.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170348659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.800 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds