Wall clock time and date at job start Tue Mar 31 2020 07:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 C 1.50703 * 109.47069 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99426 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99680 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00284 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46785 * 60.00170 * 10 8 6 12 12 H 1.48490 * 109.47243 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47054 * 300.00406 * 10 8 6 14 14 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 15 15 C 1.46898 * 110.99888 * 275.00077 * 14 2 1 16 16 C 1.53007 * 109.46764 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.46751 * 180.02562 * 16 15 14 18 18 O 1.21275 * 120.00186 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99551 * 180.02562 * 17 16 15 20 20 C 1.46502 * 119.99848 * 179.97438 * 19 17 16 21 21 C 1.50694 * 109.47309 * 179.97438 * 20 19 17 22 22 C 1.34509 * 125.79523 * 89.99933 * 21 20 19 23 23 C 1.41383 * 106.84876 * 180.02562 * 22 21 20 24 24 C 1.34521 * 106.83388 * 0.02562 * 23 22 21 25 25 O 1.34299 * 108.42123 * 359.73609 * 24 23 22 26 26 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 27 27 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 28 28 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 30 30 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 31 31 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 32 32 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 33 33 H 0.97006 * 119.99473 * 179.97438 * 9 8 6 34 34 H 1.00902 * 110.99923 * 38.96018 * 14 2 1 35 35 H 1.08995 * 109.47296 * 299.99911 * 15 14 2 36 36 H 1.08997 * 109.47334 * 60.00212 * 15 14 2 37 37 H 1.09004 * 109.47056 * 299.99764 * 16 15 14 38 38 H 1.08997 * 109.46954 * 60.00063 * 16 15 14 39 39 H 0.96999 * 120.00197 * 359.97438 * 19 17 16 40 40 H 1.08995 * 109.47060 * 299.99629 * 20 19 17 41 41 H 1.09000 * 109.47022 * 59.99306 * 20 19 17 42 42 H 1.08009 * 126.57400 * 0.03285 * 22 21 20 43 43 H 1.07994 * 126.58516 * 179.97438 * 23 22 21 44 44 H 1.08003 * 125.78129 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3231 -2.5445 7 1 3.3686 -1.8029 -3.2140 8 6 5.4183 -1.3592 -2.8164 9 7 6.2689 -0.7745 -2.0013 10 14 6.0409 -2.2385 -4.3424 11 1 5.4484 -1.6116 -5.5512 12 1 7.5208 -2.1338 -4.4049 13 1 5.6484 -3.6695 -4.2839 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2225 2.3469 16 6 2.5950 -0.5334 3.5745 17 6 2.6588 0.4052 4.7518 18 8 2.3275 1.5646 4.6217 19 7 3.0851 -0.0436 5.9490 20 6 3.1477 0.8690 7.0934 21 6 3.6524 0.1245 8.3025 22 6 4.9409 -0.0010 8.6679 23 6 4.9576 -0.7728 9.8523 24 6 3.6782 -1.0733 10.1396 25 8 2.8918 -0.5226 9.2005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2616 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9994 -1.0728 -0.4259 33 1 7.2196 -0.8002 -2.1924 34 1 1.4496 -1.4980 1.4100 35 1 2.7588 1.0461 2.1183 36 1 1.0871 0.6162 2.5526 37 1 1.9183 -1.3567 3.8030 38 1 3.5903 -0.9274 3.3691 39 1 3.3505 -0.9707 6.0529 40 1 3.8242 1.6925 6.8648 41 1 2.1523 1.2628 7.2989 42 1 5.7982 0.4092 8.1548 43 1 5.8300 -1.0657 10.4175 44 1 3.3405 -1.6545 10.9850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:20 Heat of formation + Delta-G solvation = -39.815058 kcal Electronic energy + Delta-G solvation = -22442.163883 eV Core-core repulsion = 18974.544022 eV Total energy + Delta-G solvation = -3467.619861 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.99167 -39.83224 -37.21223 -35.31498 -33.58079 -33.36455 -32.36109 -30.91648 -29.57879 -28.22637 -26.12446 -24.99292 -22.69202 -22.17149 -21.23786 -21.00395 -20.53788 -19.67860 -18.05971 -17.06147 -16.62379 -16.07407 -16.01092 -15.76643 -15.05438 -14.95031 -14.47748 -14.32457 -13.96083 -13.55470 -13.40547 -13.24195 -13.06105 -12.70474 -12.61934 -12.33263 -12.24058 -11.91220 -11.73774 -11.27975 -11.07987 -11.02930 -10.78404 -10.43856 -10.37646 -10.17709 -10.02238 -9.58339 -9.40064 -9.16262 -8.96986 -8.86978 -8.19779 -7.84392 -5.85076 -3.86115 1.18169 2.14887 2.48707 2.54849 3.12572 3.40571 3.44619 3.47235 4.15987 4.46277 4.56735 4.61202 4.63107 4.84414 4.97397 5.08548 5.19247 5.32195 5.38577 5.45487 5.50130 5.52537 5.58888 5.64383 5.66322 5.74882 5.97053 6.04271 6.07262 6.20064 6.22736 6.34621 6.47492 6.69540 6.72994 6.94009 7.22367 7.35611 7.53036 7.84806 7.88949 8.04769 8.12650 8.27411 8.61532 9.22924 9.76136 11.25948 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.002404 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.758829 B =11645.703791 C =12866.511476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.085 3.915 3 H 0.073 0.927 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.050 0.950 8 C 0.055 3.945 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 N -0.673 5.673 15 C 0.076 3.924 16 C -0.138 4.138 17 C 0.520 3.480 18 O -0.537 6.537 19 N -0.734 5.734 20 C 0.203 3.797 21 C -0.038 4.038 22 C -0.183 4.183 23 C -0.217 4.217 24 C -0.032 4.032 25 O -0.172 6.172 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.007 0.993 32 H 0.032 0.968 33 H 0.258 0.742 34 H 0.333 0.667 35 H 0.080 0.920 36 H 0.030 0.970 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.405 0.595 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.276 -0.564 24.637 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.556 4.556 7 H 0.068 0.932 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.716 3.284 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.303 5.303 15 C -0.054 4.054 16 C -0.178 4.178 17 C 0.307 3.693 18 O -0.414 6.414 19 N -0.388 5.388 20 C 0.080 3.920 21 C -0.088 4.088 22 C -0.203 4.203 23 C -0.236 4.236 24 C -0.100 4.100 25 O -0.068 6.068 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.239 0.761 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.170 0.830 43 H 0.169 0.831 44 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -6.983 0.410 24.368 25.352 hybrid contribution -0.058 -0.947 -0.305 0.997 sum -7.041 -0.537 24.063 25.078 Atomic orbital electron populations 1.22535 0.98602 1.01452 1.01369 1.21724 0.90941 0.98476 0.91336 0.90891 1.21633 1.00596 0.98328 0.93070 1.18997 0.88327 0.96513 0.96949 1.21326 0.91821 1.34043 1.08452 0.93171 1.25003 0.97154 0.95827 0.96503 1.69977 1.02168 1.44402 1.36968 0.86742 0.77546 0.80257 0.83895 1.20436 1.21436 1.20397 1.60509 1.57639 1.09065 1.03098 1.21642 0.99666 0.95351 0.88703 1.21639 1.05295 0.98302 0.92594 1.20851 0.75744 0.89083 0.83584 1.90719 1.47837 1.18653 1.84152 1.46123 1.69044 1.14328 1.09328 1.19542 1.02823 0.90565 0.79114 1.22319 0.89896 1.02070 0.94482 1.21771 0.96822 1.03328 0.98409 1.21914 0.97981 1.04176 0.99547 1.24148 0.89629 1.01440 0.94758 1.84045 1.37844 1.53840 1.31080 0.93651 0.92242 0.92836 0.93500 0.93520 0.97469 0.94937 0.93227 0.85002 0.90187 0.95163 0.89073 0.87342 0.76063 0.88226 0.89798 0.82991 0.83148 0.77870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 9.16 37.16 0.34 -2.20 16 2 C 0.08 1.47 2.59 -67.71 -0.18 1.29 16 3 H 0.07 1.35 7.80 -51.93 -0.40 0.94 16 4 C -0.10 -2.06 4.83 -26.73 -0.13 -2.19 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 10 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.67 -10.81 5.70 -106.72 -0.61 -11.42 16 15 C 0.08 1.11 4.77 -3.82 -0.02 1.09 16 16 C -0.14 -1.58 5.96 -27.88 -0.17 -1.75 16 17 C 0.52 6.33 7.83 -10.99 -0.09 6.25 16 18 O -0.54 -8.56 15.98 5.56 0.09 -8.47 16 19 N -0.73 -6.81 5.55 -61.48 -0.34 -7.15 16 20 C 0.20 1.80 6.20 -5.20 -0.03 1.76 16 21 C -0.04 -0.32 6.69 -35.63 -0.24 -0.56 16 22 C -0.18 -1.46 10.81 -39.70 -0.43 -1.89 16 23 C -0.22 -1.51 10.91 -39.70 -0.43 -1.94 16 24 C -0.03 -0.20 12.09 29.42 0.36 0.15 16 25 O -0.17 -1.52 10.65 5.71 0.06 -1.46 16 26 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.33 4.66 8.47 -39.29 -0.33 4.33 16 35 H 0.08 1.35 8.01 -51.93 -0.42 0.93 16 36 H 0.03 0.44 7.39 -51.93 -0.38 0.05 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.40 2.97 8.46 -40.82 -0.35 2.63 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.20 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 372.13 15.07 5.61 5.61 Total: -1.00 -34.65 372.13 -8.32 -42.97 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.29 Total: 2.88 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.56 Total: -13.22 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.21 Total: -45.49 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.15 Total: -9.92 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.65 -8.32 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.160 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds