Wall clock time and date at job start Tue Mar 31 2020 07:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47516 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.46975 * 175.00015 * 4 2 1 6 6 C 1.50703 * 109.47069 * 180.02562 * 5 4 2 7 7 H 1.08000 * 119.99426 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99680 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00284 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46785 * 60.00170 * 10 8 6 12 12 H 1.48490 * 109.47243 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47054 * 300.00406 * 10 8 6 14 14 N 1.46906 * 109.47160 * 120.00121 * 2 1 3 15 15 C 1.46898 * 110.99888 * 275.00077 * 14 2 1 16 16 C 1.53007 * 109.46764 * 179.97438 * 15 14 2 17 17 C 1.50699 * 109.46751 * 180.02562 * 16 15 14 18 18 O 1.21275 * 120.00186 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99551 * 180.02562 * 17 16 15 20 20 C 1.46502 * 119.99848 * 179.97438 * 19 17 16 21 21 C 1.50694 * 109.47309 * 179.97438 * 20 19 17 22 22 C 1.34509 * 125.79523 * 89.99933 * 21 20 19 23 23 C 1.41383 * 106.84876 * 180.02562 * 22 21 20 24 24 C 1.34521 * 106.83388 * 0.02562 * 23 22 21 25 25 O 1.34299 * 108.42123 * 359.73609 * 24 23 22 26 26 H 1.09001 * 109.47093 * 299.99896 * 1 2 3 27 27 H 1.09002 * 109.47121 * 59.99683 * 1 2 3 28 28 H 1.09002 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46869 * 294.99887 * 4 2 1 30 30 H 1.09000 * 109.46715 * 55.00379 * 4 2 1 31 31 H 1.09002 * 109.47050 * 299.99956 * 5 4 2 32 32 H 1.09000 * 109.47076 * 60.00044 * 5 4 2 33 33 H 0.97006 * 119.99473 * 179.97438 * 9 8 6 34 34 H 1.00902 * 110.99923 * 38.96018 * 14 2 1 35 35 H 1.08995 * 109.47296 * 299.99911 * 15 14 2 36 36 H 1.08997 * 109.47334 * 60.00212 * 15 14 2 37 37 H 1.09004 * 109.47056 * 299.99764 * 16 15 14 38 38 H 1.08997 * 109.46954 * 60.00063 * 16 15 14 39 39 H 0.96999 * 120.00197 * 359.97438 * 19 17 16 40 40 H 1.08995 * 109.47060 * 299.99629 * 20 19 17 41 41 H 1.09000 * 109.47022 * 59.99306 * 20 19 17 42 42 H 1.08009 * 126.57400 * 0.03285 * 22 21 20 43 43 H 1.07994 * 126.58516 * 179.97438 * 23 22 21 44 44 H 1.08003 * 125.78129 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0672 -1.3231 -2.5445 7 1 3.3686 -1.8029 -3.2140 8 6 5.4183 -1.3592 -2.8164 9 7 6.2689 -0.7745 -2.0013 10 14 6.0409 -2.2385 -4.3424 11 1 5.4484 -1.6116 -5.5512 12 1 7.5208 -2.1338 -4.4049 13 1 5.6484 -3.6695 -4.2839 14 7 2.0197 -0.6925 1.1995 15 6 2.0824 0.2225 2.3469 16 6 2.5950 -0.5334 3.5745 17 6 2.6588 0.4052 4.7518 18 8 2.3275 1.5646 4.6217 19 7 3.0851 -0.0436 5.9490 20 6 3.1477 0.8690 7.0934 21 6 3.6524 0.1245 8.3025 22 6 4.9409 -0.0010 8.6679 23 6 4.9576 -0.7728 9.8523 24 6 3.6782 -1.0733 10.1396 25 8 2.8918 -0.5226 9.2005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2616 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9994 -1.0728 -0.4259 33 1 7.2196 -0.8002 -2.1924 34 1 1.4496 -1.4980 1.4100 35 1 2.7588 1.0461 2.1183 36 1 1.0871 0.6162 2.5526 37 1 1.9183 -1.3567 3.8030 38 1 3.5903 -0.9274 3.3691 39 1 3.3505 -0.9707 6.0529 40 1 3.8242 1.6925 6.8648 41 1 2.1523 1.2628 7.2989 42 1 5.7982 0.4092 8.1548 43 1 5.8300 -1.0657 10.4175 44 1 3.3405 -1.6545 10.9850 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:19 Heat of formation + Delta-G solvation = -64.109665 kcal Electronic energy + Delta-G solvation = -22443.217376 eV Core-core repulsion = 18974.544022 eV Total energy + Delta-G solvation = -3468.673354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.56750 -40.82636 -38.58453 -36.20298 -35.43331 -34.02819 -33.90519 -31.91050 -31.09790 -29.37042 -27.04788 -26.77453 -23.91272 -22.99531 -22.73239 -21.71872 -21.58395 -21.08132 -18.76536 -18.32467 -17.93674 -17.31016 -16.99997 -16.57837 -16.47650 -16.28252 -15.90969 -15.34842 -15.14163 -14.65878 -14.51028 -14.27479 -14.00319 -13.79665 -13.73507 -13.56710 -13.50626 -13.15108 -12.99528 -12.90141 -12.79518 -12.49672 -12.30274 -12.15854 -11.76123 -11.50367 -11.19534 -11.14600 -10.94849 -10.88315 -10.45763 -10.26251 -9.55049 -9.14579 -8.11107 -6.21671 0.58755 1.41510 1.45100 1.52723 1.55960 1.59520 1.92464 2.32212 2.45847 3.20831 3.33669 3.58544 3.83255 4.02761 4.08100 4.09795 4.16053 4.20001 4.33811 4.38531 4.48061 4.51363 4.63929 4.80105 4.86667 4.90263 4.95965 4.97986 5.05225 5.10004 5.11605 5.14667 5.26016 5.30581 5.49780 5.53583 5.61993 5.90643 6.05488 6.13139 6.22065 6.37102 6.41398 6.68871 6.98203 7.13530 7.46249 9.00069 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.002404 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.758829 B =11645.703791 C =12866.511476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 H 0.052 0.948 4 C -0.087 4.087 5 C 0.037 3.963 6 C -0.542 4.542 7 H 0.057 0.943 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.266 1.266 14 N -0.687 5.687 15 C 0.083 3.917 16 C -0.129 4.129 17 C 0.521 3.479 18 O -0.581 6.581 19 N -0.718 5.718 20 C 0.205 3.795 21 C -0.053 4.053 22 C -0.189 4.189 23 C -0.231 4.231 24 C -0.026 4.026 25 O -0.188 6.188 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.048 0.952 31 H -0.028 1.028 32 H 0.007 0.993 33 H 0.261 0.739 34 H 0.347 0.653 35 H 0.046 0.954 36 H 0.035 0.965 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.416 0.584 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.158 0.842 43 H 0.169 0.831 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 -2.462 25.211 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.021 4.021 3 H 0.070 0.930 4 C -0.125 4.125 5 C 0.000 4.000 6 C -0.580 4.580 7 H 0.075 0.925 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.191 1.191 14 N -0.319 5.319 15 C -0.047 4.047 16 C -0.169 4.169 17 C 0.309 3.691 18 O -0.460 6.460 19 N -0.372 5.372 20 C 0.082 3.918 21 C -0.103 4.103 22 C -0.209 4.209 23 C -0.250 4.250 24 C -0.093 4.093 25 O -0.085 6.085 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.067 0.933 31 H -0.010 1.010 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.167 0.833 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.253 0.747 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.175 0.825 43 H 0.187 0.813 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -7.775 -1.525 24.967 26.194 hybrid contribution 0.238 -0.362 -0.394 0.585 sum -7.538 -1.887 24.574 25.773 Atomic orbital electron populations 1.22382 0.95335 1.02734 1.02268 1.21508 0.93410 0.96775 0.90379 0.92965 1.21456 0.96491 0.99298 0.95280 1.18839 0.92259 0.93653 0.95231 1.21793 0.92496 1.34351 1.09372 0.92513 1.25978 0.97439 0.96562 1.00048 1.70129 1.02548 1.45680 1.39087 0.85553 0.76922 0.79332 0.79520 1.19385 1.20988 1.19068 1.60371 1.58425 1.09880 1.03219 1.21497 0.99218 0.94638 0.89318 1.21552 1.05891 0.98509 0.90960 1.20929 0.75325 0.88448 0.84378 1.90704 1.50092 1.20346 1.84885 1.46003 1.67571 1.14981 1.08654 1.19489 1.02580 0.90546 0.79211 1.22167 0.90105 1.03240 0.94795 1.22014 0.96801 1.03164 0.98907 1.22224 0.99050 1.04285 0.99450 1.24910 0.89415 1.00379 0.94621 1.84036 1.38581 1.54218 1.31624 0.92378 0.91752 0.91305 0.92819 0.93302 1.00973 0.97426 0.93065 0.83330 0.93499 0.94711 0.85814 0.87402 0.74721 0.88411 0.90263 0.82463 0.81322 0.74407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 9.16 71.98 0.66 -3.75 16 2 C 0.09 3.08 2.59 44.92 0.12 3.20 16 3 H 0.05 2.01 7.80 -2.39 -0.02 1.99 16 4 C -0.09 -3.67 4.83 30.60 0.15 -3.52 16 5 C 0.04 2.05 4.86 29.85 0.15 2.20 16 6 C -0.54 -31.96 9.11 25.60 0.23 -31.72 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 9 N -0.93 -58.88 13.29 21.45 0.28 -58.59 16 10 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 N -0.69 -21.92 5.70 -491.55 -2.80 -24.73 16 15 C 0.08 2.44 4.77 86.31 0.41 2.85 16 16 C -0.13 -2.87 5.96 29.85 0.18 -2.69 16 17 C 0.52 12.67 7.83 87.66 0.69 13.36 16 18 O -0.58 -18.99 15.98 -3.01 -0.05 -19.04 16 19 N -0.72 -13.00 5.55 -466.80 -2.59 -15.59 16 20 C 0.20 3.64 6.20 85.63 0.53 4.17 16 21 C -0.05 -0.88 6.69 24.83 0.17 -0.72 16 22 C -0.19 -2.86 10.81 22.19 0.24 -2.62 16 23 C -0.23 -2.82 10.91 22.19 0.24 -2.57 16 24 C -0.03 -0.28 12.09 66.97 0.81 0.53 16 25 O -0.19 -3.09 10.65 -2.48 -0.03 -3.12 16 26 H 0.06 1.39 7.45 -2.39 -0.02 1.37 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 29 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 32 H 0.01 0.43 7.75 -2.39 -0.02 0.42 16 33 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 34 H 0.35 9.17 8.47 -89.69 -0.76 8.41 16 35 H 0.05 1.68 8.01 -2.39 -0.02 1.66 16 36 H 0.03 0.99 7.39 -2.39 -0.02 0.97 16 37 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.42 5.64 8.46 -92.71 -0.78 4.86 16 40 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.24 0.57 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -76.49 372.13 1.32 -75.18 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.55 Total: 19.41 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 5.03 Total: -21.01 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -5.11 Total: -98.91 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -76.49 1.32 -75.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.066 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds