Wall clock time and date at job start Tue Mar 31 2020 07:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 116.99917 * 2 1 4 4 C 1.38807 * 120.49031 * 359.97415 * 3 2 1 5 5 C 1.38778 * 118.43502 * 180.02562 * 4 3 2 6 6 C 1.38051 * 119.33291 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.53002 * 180.26133 * 6 5 4 8 8 N 1.46900 * 109.46785 * 94.72746 * 7 6 5 9 9 C 1.46908 * 111.00006 * 179.97438 * 8 7 6 10 10 H 1.09011 * 109.46857 * 34.99972 * 9 8 7 11 11 C 1.52999 * 109.47158 * 275.00208 * 9 8 7 12 12 C 1.52996 * 109.47151 * 154.99981 * 9 8 7 13 13 C 1.53003 * 109.47070 * 295.00016 * 12 9 8 14 14 C 1.50708 * 109.46785 * 180.02562 * 13 12 9 15 15 H 1.08003 * 119.99892 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46774 * 60.00446 * 18 16 14 20 20 H 1.48501 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47153 * 300.00351 * 18 16 14 22 22 N 1.31994 * 120.93899 * 359.97438 * 6 5 4 23 23 C 1.32161 * 121.70057 * 0.02562 * 22 6 5 24 24 O 1.35762 * 119.71211 * 179.97438 * 23 22 6 25 25 C 1.42901 * 117.00226 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46709 * 60.00440 * 1 2 3 27 27 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47631 * 300.00466 * 1 2 3 29 29 H 1.07992 * 120.77998 * 0.02562 * 4 3 2 30 30 H 1.08003 * 120.33036 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.47477 * 214.72580 * 7 6 5 32 32 H 1.09003 * 109.46989 * 334.73435 * 7 6 5 33 33 H 1.00895 * 111.00221 * 56.04798 * 8 7 6 34 34 H 1.09002 * 109.46936 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.47028 * 299.99648 * 11 9 8 36 36 H 1.09008 * 109.46901 * 59.99660 * 11 9 8 37 37 H 1.09000 * 109.47405 * 55.00237 * 12 9 8 38 38 H 1.09003 * 109.46946 * 175.00289 * 12 9 8 39 39 H 1.08993 * 109.47388 * 300.00033 * 13 12 9 40 40 H 1.08994 * 109.46796 * 60.00322 * 13 12 9 41 41 H 0.96997 * 119.99679 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.47288 * 300.00382 * 25 24 23 43 43 H 1.08998 * 109.47124 * 59.99980 * 25 24 23 44 44 H 1.09004 * 109.47547 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.3004 2.3823 -0.0005 5 6 1.9744 3.5954 -0.0011 6 6 3.3549 3.6022 -0.0016 7 6 4.0913 4.9170 0.0038 8 7 4.4306 5.2824 1.3856 9 6 5.1516 6.5616 1.4300 10 1 4.7677 7.2222 0.6524 11 6 6.6436 6.3144 1.1984 12 6 4.9492 7.2139 2.7990 13 6 3.4732 7.5747 2.9788 14 6 3.2740 8.2178 4.3272 15 1 4.1160 8.3558 4.9893 16 6 2.0170 8.6310 4.7149 17 7 0.9918 8.4634 3.9083 18 14 1.7699 9.4274 6.3864 19 1 2.5954 10.6587 6.4748 20 1 0.3374 9.7777 6.5609 21 1 2.1804 8.4786 7.4524 22 7 4.0390 2.4733 -0.0011 23 6 3.4373 1.2966 -0.0005 24 8 4.1808 0.1607 -0.0006 25 6 5.6014 0.3151 -0.0017 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2210 2.3497 -0.0006 30 1 1.4243 4.5249 -0.0011 31 1 5.0055 4.8239 -0.5823 32 1 3.4577 5.6900 -0.4312 33 1 4.9638 4.5516 1.8324 34 1 7.1785 7.2637 1.2308 35 1 7.0274 5.6540 1.9759 36 1 6.7878 5.8497 0.2229 37 1 5.2509 6.5176 3.5815 38 1 5.5547 8.1180 2.8638 39 1 3.1714 8.2710 2.1965 40 1 2.8678 6.6707 2.9140 41 1 0.1075 8.7537 4.1812 42 1 5.9064 0.8648 -0.8921 43 1 5.9078 0.8656 0.8878 44 1 6.0738 -0.6673 -0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:04 Heat of formation + Delta-G solvation = -48.036575 kcal Electronic energy + Delta-G solvation = -23510.603027 eV Core-core repulsion = 20042.626654 eV Total energy + Delta-G solvation = -3467.976372 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97520 -38.59966 -38.10689 -36.82799 -33.35568 -32.14094 -31.83558 -30.10293 -28.94321 -27.56154 -27.26968 -25.22236 -24.47005 -23.07752 -21.78170 -21.24314 -19.80007 -18.47274 -17.89585 -17.14524 -16.41498 -16.09212 -15.43907 -15.32918 -15.04848 -14.88559 -14.45335 -14.35099 -13.83368 -13.64972 -13.35848 -13.18723 -12.70768 -12.43352 -12.27511 -12.04556 -12.03454 -11.70170 -11.53442 -11.48988 -11.31020 -11.14445 -11.09112 -10.79834 -10.45438 -10.20907 -9.80351 -9.62161 -9.58334 -9.18551 -8.89306 -8.21669 -8.01902 -7.81753 -5.87126 -3.87695 1.12460 1.22447 2.91571 3.16415 3.39578 3.43482 3.46384 3.65326 4.20137 4.55508 4.63308 4.73204 4.82615 4.95079 4.97443 5.06233 5.21353 5.26006 5.28036 5.29966 5.39725 5.48548 5.52378 5.57664 5.61792 5.72691 5.82501 5.98018 6.09687 6.14566 6.30608 6.31385 6.43860 6.69199 6.83707 6.91772 7.32273 7.34565 7.49086 7.78208 7.86459 7.87493 8.10297 8.25487 8.59854 9.21002 9.74638 11.23959 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.003572 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.215847 B = 7836.103557 C = 9135.994496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.056 3.944 4 C -0.133 4.133 5 C -0.139 4.139 6 C 0.138 3.862 7 C 0.114 3.886 8 N -0.664 5.664 9 C 0.085 3.915 10 H 0.073 0.927 11 C -0.180 4.180 12 C -0.098 4.098 13 C 0.030 3.970 14 C -0.518 4.518 15 H 0.050 0.950 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.886 3.114 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 N -0.501 5.501 23 C 0.297 3.703 24 O -0.301 6.301 25 C 0.041 3.959 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.146 0.854 30 H 0.147 0.853 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.339 0.661 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.007 0.993 40 H 0.032 0.968 41 H 0.258 0.742 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -15.715 -12.117 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.008 3.992 4 C -0.159 4.159 5 C -0.160 4.160 6 C 0.002 3.998 7 C -0.015 4.015 8 N -0.295 5.295 9 C -0.025 4.025 10 H 0.092 0.908 11 C -0.239 4.239 12 C -0.136 4.136 13 C -0.007 4.007 14 C -0.557 4.557 15 H 0.068 0.932 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.715 3.285 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.204 1.204 22 N -0.226 5.226 23 C 0.116 3.884 24 O -0.208 6.208 25 C -0.054 4.054 26 H 0.073 0.927 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.157 0.843 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.727 -15.839 -12.005 20.221 hybrid contribution -0.293 0.433 0.677 0.856 sum 3.434 -15.406 -11.327 19.428 Atomic orbital electron populations 1.23098 0.78469 1.04047 1.01446 1.86169 1.21079 1.25343 1.89091 1.18908 0.89821 0.85969 1.04460 1.21540 1.00739 0.91105 1.02557 1.21751 0.94600 0.98689 1.00915 1.20741 0.91063 0.92110 0.95867 1.20777 0.98070 0.90936 0.91767 1.60588 1.49765 1.04983 1.14203 1.21758 0.89712 0.90519 1.00486 0.90837 1.22533 0.98892 1.01863 1.00639 1.21628 1.01386 0.97719 0.92875 1.18994 0.89492 0.96779 0.95472 1.21329 0.93409 1.38694 1.02232 0.93195 1.24982 0.96270 0.96269 0.96845 1.69964 0.99515 1.47947 1.36109 0.86755 0.76861 0.79850 0.85061 1.20420 1.21417 1.20400 1.67155 1.40210 0.97246 1.18013 1.18981 0.86024 0.85683 0.97693 1.86308 1.19892 1.26282 1.88355 1.22819 0.77621 1.02611 1.02361 0.92684 0.88134 0.92441 0.83616 0.83560 0.94029 0.89199 0.84305 0.92242 0.92802 0.93624 0.93517 0.93449 0.97454 0.94920 0.93256 0.92550 0.92312 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 101.05 0.99 1.19 16 2 O -0.30 -3.86 10.29 -34.12 -0.35 -4.21 16 3 C 0.06 0.78 6.72 -38.96 -0.26 0.52 16 4 C -0.13 -1.66 9.14 -39.17 -0.36 -2.02 16 5 C -0.14 -1.90 9.71 -39.45 -0.38 -2.28 16 6 C 0.14 2.00 6.29 -82.59 -0.52 1.48 16 7 C 0.11 1.62 5.79 -4.97 -0.03 1.59 16 8 N -0.66 -10.94 5.69 -107.98 -0.61 -11.55 16 9 C 0.08 1.41 2.59 -67.71 -0.18 1.23 16 10 H 0.07 1.24 7.80 -51.92 -0.41 0.83 16 11 C -0.18 -2.46 9.16 37.16 0.34 -2.12 16 12 C -0.10 -2.03 4.83 -26.73 -0.13 -2.16 16 13 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 14 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 15 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 N -0.50 -7.41 9.13 -9.43 -0.09 -7.49 16 23 C 0.30 4.41 7.50 -17.00 -0.13 4.28 16 24 O -0.30 -4.21 10.27 -33.39 -0.34 -4.55 16 25 C 0.04 0.43 10.38 101.05 1.05 1.48 16 26 H 0.05 0.37 7.70 -51.93 -0.40 -0.03 16 27 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 29 H 0.15 1.40 6.44 -52.49 -0.34 1.06 16 30 H 0.15 1.89 8.06 -52.48 -0.42 1.47 16 31 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 32 H 0.09 1.23 7.95 -51.93 -0.41 0.82 16 33 H 0.34 5.47 8.46 -39.29 -0.33 5.14 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 36 H 0.04 0.56 7.45 -51.92 -0.39 0.18 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.03 0.92 7.75 -51.93 -0.40 0.51 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 43 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -33.06 366.89 -7.52 -40.58 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.23 Total: 1.08 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -0.15 Total: -9.91 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.04 Total: -45.59 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.69 Total: -8.77 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.06 -7.52 -40.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.454 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds