Wall clock time and date at job start Tue Mar 31 2020 07:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 116.99917 * 2 1 4 4 C 1.38807 * 120.49031 * 359.97415 * 3 2 1 5 5 C 1.38778 * 118.43502 * 180.02562 * 4 3 2 6 6 C 1.38051 * 119.33291 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.53002 * 180.26133 * 6 5 4 8 8 N 1.46900 * 109.46785 * 94.72746 * 7 6 5 9 9 C 1.46908 * 111.00006 * 179.97438 * 8 7 6 10 10 H 1.09011 * 109.46857 * 34.99972 * 9 8 7 11 11 C 1.52999 * 109.47158 * 275.00208 * 9 8 7 12 12 C 1.52996 * 109.47151 * 154.99981 * 9 8 7 13 13 C 1.53003 * 109.47070 * 295.00016 * 12 9 8 14 14 C 1.50708 * 109.46785 * 180.02562 * 13 12 9 15 15 H 1.08003 * 119.99892 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99879 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46774 * 60.00446 * 18 16 14 20 20 H 1.48501 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47153 * 300.00351 * 18 16 14 22 22 N 1.31994 * 120.93899 * 359.97438 * 6 5 4 23 23 C 1.32161 * 121.70057 * 0.02562 * 22 6 5 24 24 O 1.35762 * 119.71211 * 179.97438 * 23 22 6 25 25 C 1.42901 * 117.00226 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46709 * 60.00440 * 1 2 3 27 27 H 1.09000 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47631 * 300.00466 * 1 2 3 29 29 H 1.07992 * 120.77998 * 0.02562 * 4 3 2 30 30 H 1.08003 * 120.33036 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.47477 * 214.72580 * 7 6 5 32 32 H 1.09003 * 109.46989 * 334.73435 * 7 6 5 33 33 H 1.00895 * 111.00221 * 56.04798 * 8 7 6 34 34 H 1.09002 * 109.46936 * 179.97438 * 11 9 8 35 35 H 1.08997 * 109.47028 * 299.99648 * 11 9 8 36 36 H 1.09008 * 109.46901 * 59.99660 * 11 9 8 37 37 H 1.09000 * 109.47405 * 55.00237 * 12 9 8 38 38 H 1.09003 * 109.46946 * 175.00289 * 12 9 8 39 39 H 1.08993 * 109.47388 * 300.00033 * 13 12 9 40 40 H 1.08994 * 109.46796 * 60.00322 * 13 12 9 41 41 H 0.96997 * 119.99679 * 179.97438 * 17 16 14 42 42 H 1.09000 * 109.47288 * 300.00382 * 25 24 23 43 43 H 1.08998 * 109.47124 * 59.99980 * 25 24 23 44 44 H 1.09004 * 109.47547 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.3004 2.3823 -0.0005 5 6 1.9744 3.5954 -0.0011 6 6 3.3549 3.6022 -0.0016 7 6 4.0913 4.9170 0.0038 8 7 4.4306 5.2824 1.3856 9 6 5.1516 6.5616 1.4300 10 1 4.7677 7.2222 0.6524 11 6 6.6436 6.3144 1.1984 12 6 4.9492 7.2139 2.7990 13 6 3.4732 7.5747 2.9788 14 6 3.2740 8.2178 4.3272 15 1 4.1160 8.3558 4.9893 16 6 2.0170 8.6310 4.7149 17 7 0.9918 8.4634 3.9083 18 14 1.7699 9.4274 6.3864 19 1 2.5954 10.6587 6.4748 20 1 0.3374 9.7777 6.5609 21 1 2.1804 8.4786 7.4524 22 7 4.0390 2.4733 -0.0011 23 6 3.4373 1.2966 -0.0005 24 8 4.1808 0.1607 -0.0006 25 6 5.6014 0.3151 -0.0017 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2210 2.3497 -0.0006 30 1 1.4243 4.5249 -0.0011 31 1 5.0055 4.8239 -0.5823 32 1 3.4577 5.6900 -0.4312 33 1 4.9638 4.5516 1.8324 34 1 7.1785 7.2637 1.2308 35 1 7.0274 5.6540 1.9759 36 1 6.7878 5.8497 0.2229 37 1 5.2509 6.5176 3.5815 38 1 5.5547 8.1180 2.8638 39 1 3.1714 8.2710 2.1965 40 1 2.8678 6.6707 2.9140 41 1 0.1075 8.7537 4.1812 42 1 5.9064 0.8648 -0.8921 43 1 5.9078 0.8656 0.8878 44 1 6.0738 -0.6673 -0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:03 Heat of formation + Delta-G solvation = -71.203117 kcal Electronic energy + Delta-G solvation = -23511.607603 eV Core-core repulsion = 20042.626654 eV Total energy + Delta-G solvation = -3468.980949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98454 -39.53189 -39.19548 -38.11365 -35.31035 -33.59636 -32.93602 -31.55680 -30.27016 -28.47916 -28.08698 -26.98825 -25.72838 -24.09158 -23.20775 -22.67402 -21.35507 -19.44686 -18.87969 -18.34883 -18.11130 -17.38338 -16.66276 -16.47355 -16.24400 -16.18525 -15.82198 -15.53509 -14.89677 -14.65007 -14.55326 -14.38026 -14.24819 -14.00331 -13.59889 -13.26779 -13.19671 -12.94147 -12.82531 -12.77638 -12.56089 -12.33881 -12.31740 -12.27245 -12.11394 -11.76509 -11.49277 -11.18333 -10.98909 -10.83586 -10.60793 -10.44420 -9.19493 -8.95285 -8.10753 -6.20258 0.07780 0.17092 1.41205 1.44180 1.51653 1.99510 2.29318 2.45819 2.57417 3.14558 3.21471 3.51706 3.71412 3.85176 3.97960 4.09158 4.23572 4.36498 4.38212 4.39452 4.44111 4.46027 4.47735 4.56482 4.69158 4.73442 4.75978 4.81446 4.95603 5.01456 5.06381 5.08423 5.12748 5.29377 5.31669 5.50170 5.62491 5.92663 5.93798 6.06952 6.24043 6.37304 6.38749 6.53975 6.79146 6.99041 7.47168 9.00142 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.003572 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.215847 B = 7836.103557 C = 9135.994496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.051 3.949 4 C -0.129 4.129 5 C -0.149 4.149 6 C 0.123 3.877 7 C 0.122 3.878 8 N -0.683 5.683 9 C 0.092 3.908 10 H 0.070 0.930 11 C -0.168 4.168 12 C -0.088 4.088 13 C 0.039 3.961 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.271 1.271 22 N -0.507 5.507 23 C 0.277 3.723 24 O -0.315 6.315 25 C 0.038 3.962 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.062 0.938 29 H 0.174 0.826 30 H 0.149 0.851 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.339 0.661 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.051 0.949 39 H -0.019 1.019 40 H 0.005 0.995 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -16.120 -11.897 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.234 6.234 3 C 0.003 3.997 4 C -0.154 4.154 5 C -0.170 4.170 6 C -0.013 4.013 7 C -0.008 4.008 8 N -0.314 5.314 9 C -0.018 4.018 10 H 0.088 0.912 11 C -0.227 4.227 12 C -0.126 4.126 13 C 0.002 3.998 14 C -0.583 4.583 15 H 0.071 0.929 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.782 3.218 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.196 1.196 22 N -0.232 5.232 23 C 0.096 3.904 24 O -0.222 6.222 25 C -0.056 4.056 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.081 0.919 29 H 0.191 0.809 30 H 0.167 0.833 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.000 1.000 40 H 0.023 0.977 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.062 -16.252 -11.791 20.486 hybrid contribution -0.457 0.488 0.589 0.891 sum 3.605 -15.764 -11.203 19.672 Atomic orbital electron populations 1.23431 0.76166 1.05951 1.02424 1.86150 1.23488 1.24880 1.88881 1.19071 0.89854 0.86782 1.04019 1.21815 1.02076 0.90166 1.01358 1.21905 0.94579 0.99411 1.01108 1.20828 0.91537 0.92163 0.96768 1.20719 0.98577 0.90917 0.90558 1.60485 1.50102 1.04914 1.15915 1.21553 0.92123 0.90416 0.97677 0.91163 1.22384 0.96092 1.02564 1.01688 1.21455 0.97476 0.98190 0.95467 1.18818 0.92715 0.94566 0.93687 1.21800 0.93846 1.39140 1.03481 0.92918 1.25890 0.95957 0.96764 1.00992 1.70099 0.99997 1.48765 1.38160 0.85630 0.77071 0.79109 0.79983 1.19282 1.20814 1.19586 1.67109 1.40500 0.97342 1.18275 1.19291 0.86873 0.85895 0.98330 1.86291 1.21402 1.26186 1.88361 1.23024 0.76176 1.04372 1.02076 0.91170 0.85914 0.91897 0.80867 0.83311 0.92772 0.89167 0.84243 0.91401 0.92474 0.91926 0.93929 0.93010 1.00017 0.97663 0.93065 0.92450 0.92914 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.83 113.37 1.11 1.32 16 2 O -0.32 -7.85 10.29 -79.75 -0.82 -8.67 16 3 C 0.05 1.39 6.72 22.67 0.15 1.54 16 4 C -0.13 -3.10 9.14 22.54 0.21 -2.90 16 5 C -0.15 -4.08 9.71 22.35 0.22 -3.87 16 6 C 0.12 3.57 6.29 42.49 0.27 3.84 16 7 C 0.12 3.42 5.79 85.56 0.50 3.92 16 8 N -0.68 -22.51 5.69 -495.55 -2.82 -25.33 16 9 C 0.09 3.01 2.59 44.91 0.12 3.13 16 10 H 0.07 2.35 7.80 -2.38 -0.02 2.33 16 11 C -0.17 -4.27 9.16 71.98 0.66 -3.61 16 12 C -0.09 -3.65 4.83 30.59 0.15 -3.50 16 13 C 0.04 2.11 4.86 29.85 0.15 2.26 16 14 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 15 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 18 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 22 N -0.51 -14.98 9.13 -296.62 -2.71 -17.68 16 23 C 0.28 8.21 7.50 84.91 0.64 8.85 16 24 O -0.31 -8.73 10.27 -77.12 -0.79 -9.52 16 25 C 0.04 0.77 10.38 113.37 1.18 1.95 16 26 H 0.07 0.80 7.70 -2.39 -0.02 0.78 16 27 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 0.84 7.70 -2.39 -0.02 0.82 16 29 H 0.17 3.03 6.44 -2.91 -0.02 3.01 16 30 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 31 H 0.05 1.38 7.43 -2.39 -0.02 1.36 16 32 H 0.09 2.49 7.95 -2.39 -0.02 2.47 16 33 H 0.34 10.92 8.46 -89.70 -0.76 10.17 16 34 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.06 1.40 7.45 -2.38 -0.02 1.38 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H 0.00 0.29 7.75 -2.39 -0.02 0.27 16 41 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 43 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 44 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -71.55 366.89 1.42 -70.13 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.22 Total: 19.12 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 6.03 Total: -18.19 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -5.24 Total: -100.14 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -1.61 Total: -18.19 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -71.55 1.42 -70.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.073 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds