Wall clock time and date at job start Tue Mar 31 2020 07:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 116.99998 * 2 1 4 4 C 1.38793 * 120.48786 * 0.02562 * 3 2 1 5 5 C 1.38788 * 118.43391 * 179.97438 * 4 3 2 6 6 C 1.38044 * 119.33227 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.53380 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47741 * 95.01928 * 7 6 5 9 9 C 1.46890 * 111.00397 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47478 * 325.00064 * 9 8 7 11 11 C 1.53007 * 109.47165 * 85.00140 * 9 8 7 12 12 C 1.52998 * 109.47377 * 205.00018 * 9 8 7 13 13 C 1.53004 * 109.47186 * 65.00007 * 12 9 8 14 14 C 1.50699 * 109.47396 * 180.02562 * 13 12 9 15 15 H 1.07998 * 119.99752 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00082 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00061 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46936 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47214 * 119.99286 * 18 16 14 21 21 H 1.48503 * 109.46809 * 239.99459 * 18 16 14 22 22 N 1.31994 * 120.93783 * 0.02562 * 6 5 4 23 23 C 1.32161 * 121.70515 * 359.97438 * 22 6 5 24 24 O 1.35760 * 119.72087 * 180.02562 * 23 22 6 25 25 C 1.42900 * 116.99636 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.46879 * 300.00177 * 1 2 3 27 27 H 1.09000 * 109.47261 * 59.99603 * 1 2 3 28 28 H 1.08998 * 109.47571 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.78751 * 359.95658 * 4 3 2 30 30 H 1.08002 * 120.33191 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47256 * 215.02597 * 7 6 5 32 32 H 1.09003 * 109.46741 * 335.02056 * 7 6 5 33 33 H 1.00905 * 110.99732 * 303.96312 * 8 7 6 34 34 H 1.08997 * 109.47526 * 179.97438 * 11 9 8 35 35 H 1.08992 * 109.47235 * 300.00267 * 11 9 8 36 36 H 1.09003 * 109.46837 * 59.99917 * 11 9 8 37 37 H 1.08997 * 109.47558 * 185.00077 * 12 9 8 38 38 H 1.09005 * 109.47349 * 305.00526 * 12 9 8 39 39 H 1.08997 * 109.46929 * 300.00455 * 13 12 9 40 40 H 1.09005 * 109.46553 * 60.00031 * 13 12 9 41 41 H 0.97000 * 120.00067 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.47197 * 60.00573 * 25 24 23 43 43 H 1.09007 * 109.47252 * 180.02562 * 25 24 23 44 44 H 1.08993 * 109.47672 * 300.00653 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3005 2.3822 0.0005 5 6 1.9745 3.5954 0.0011 6 6 3.3549 3.6021 0.0016 7 6 4.0914 4.9169 0.0027 8 7 4.4359 5.2841 1.3827 9 6 5.1560 6.5638 1.4228 10 1 5.7934 6.6498 0.5429 11 6 4.1488 7.7155 1.4376 12 6 6.0184 6.6244 2.6851 13 6 7.1057 5.5503 2.6121 14 6 7.9548 5.6096 3.8557 15 1 7.7406 6.3405 4.6214 16 6 9.0056 4.7314 4.0154 17 7 9.2666 3.8417 3.0827 18 14 10.0576 4.8044 5.5573 19 1 9.5599 5.8854 6.4454 20 1 9.9823 3.5037 6.2699 21 1 11.4673 5.0823 5.1819 22 7 4.0390 2.4733 0.0011 23 6 3.4374 1.2966 0.0006 24 8 4.1808 0.1606 0.0006 25 6 5.6014 0.3150 0.0006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2210 2.3497 0.0003 30 1 1.4245 4.5249 0.0019 31 1 5.0034 4.8231 -0.5868 32 1 3.4563 5.6894 -0.4310 33 1 3.6125 5.3143 1.9651 34 1 4.6830 8.6651 1.4678 35 1 3.5344 7.6724 0.5384 36 1 3.5114 7.6294 2.3176 37 1 6.4833 7.6073 2.7608 38 1 5.3934 6.4496 3.5610 39 1 6.6408 4.5674 2.5364 40 1 7.7306 5.7251 1.7362 41 1 10.0056 3.2236 3.1953 42 1 5.9071 0.8650 0.8906 43 1 6.0737 -0.6674 0.0001 44 1 5.9071 0.8652 -0.8893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:07 Heat of formation + Delta-G solvation = -45.698813 kcal Electronic energy + Delta-G solvation = -23643.456292 eV Core-core repulsion = 20175.581292 eV Total energy + Delta-G solvation = -3467.874999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93810 -38.55857 -38.02690 -36.81885 -33.33187 -32.12514 -31.84441 -30.06019 -28.92523 -27.58992 -27.03571 -25.20639 -24.50368 -22.99523 -21.77588 -21.23994 -19.79011 -18.43188 -17.80234 -17.18365 -16.33495 -16.05981 -15.40088 -15.25389 -15.03030 -14.88647 -14.34999 -14.22370 -13.93069 -13.49521 -13.40357 -13.27683 -12.68438 -12.44082 -12.23282 -12.20325 -11.85971 -11.60406 -11.50248 -11.43153 -11.27508 -11.10121 -10.94718 -10.80711 -10.38846 -10.19647 -9.64057 -9.58374 -9.57171 -9.15775 -8.83130 -8.18336 -7.99970 -7.80576 -5.82664 -3.83585 1.13856 1.19933 2.97269 3.26215 3.39567 3.46704 3.50737 3.67994 4.26856 4.51791 4.58589 4.67444 4.81253 4.90837 4.95450 5.02284 5.19343 5.23733 5.37478 5.47808 5.52588 5.53961 5.58089 5.66615 5.68941 5.83591 5.85184 5.95559 6.02484 6.12043 6.27364 6.34035 6.43376 6.70438 6.90273 6.93007 7.35266 7.43847 7.50028 7.80441 7.91218 7.99792 8.14843 8.31922 8.63745 9.25925 9.78578 11.28222 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003873 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.270719 B = 7228.257175 C = 8649.787611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.302 6.302 3 C 0.053 3.947 4 C -0.135 4.135 5 C -0.171 4.171 6 C 0.145 3.855 7 C 0.113 3.887 8 N -0.661 5.661 9 C 0.085 3.915 10 H 0.074 0.926 11 C -0.181 4.181 12 C -0.098 4.098 13 C 0.029 3.971 14 C -0.517 4.517 15 H 0.050 0.950 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.885 3.115 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.286 1.286 22 N -0.475 5.475 23 C 0.308 3.692 24 O -0.302 6.302 25 C 0.038 3.962 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.334 0.666 34 H 0.059 0.941 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.007 0.993 41 H 0.256 0.744 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.361 -2.888 -9.757 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.004 3.996 4 C -0.161 4.161 5 C -0.192 4.192 6 C 0.008 3.992 7 C -0.017 4.017 8 N -0.292 5.292 9 C -0.024 4.024 10 H 0.092 0.908 11 C -0.240 4.240 12 C -0.136 4.136 13 C -0.008 4.008 14 C -0.556 4.556 15 H 0.068 0.932 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.713 3.287 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.212 1.212 22 N -0.200 5.200 23 C 0.126 3.874 24 O -0.209 6.209 25 C -0.057 4.057 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.161 0.839 30 H 0.154 0.846 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.025 0.975 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.735 -3.863 -9.792 20.624 hybrid contribution -1.022 0.832 0.719 1.501 sum -18.757 -3.031 -9.074 21.055 Atomic orbital electron populations 1.23070 0.78753 1.04037 1.01096 1.86206 1.20827 1.25350 1.89096 1.18948 0.89953 0.85890 1.04766 1.21397 1.00337 0.91152 1.03179 1.21621 0.94614 0.98225 1.04722 1.20767 0.90201 0.92875 0.95342 1.20777 0.99082 0.89468 0.92377 1.60456 1.28231 1.32944 1.07572 1.21761 0.94365 0.85191 1.01111 0.90791 1.22552 1.00127 1.00609 1.00713 1.21625 0.97551 1.00349 0.94036 1.18997 0.91591 0.94422 0.95762 1.21386 1.13152 1.16448 1.04577 0.93155 1.24991 0.97604 0.95675 0.96158 1.69996 1.29839 1.20040 1.33371 0.86656 0.80405 0.77731 0.83884 1.19924 1.21171 1.21215 1.67318 1.39612 0.96927 1.16100 1.19172 0.86000 0.86114 0.96095 1.86282 1.20675 1.26103 1.87791 1.22938 0.76474 1.02899 1.03416 0.92718 0.92843 0.88139 0.83929 0.84620 0.89167 0.94048 0.84778 0.92166 0.93709 0.92784 0.93500 0.93554 0.94773 0.97501 0.93386 0.91159 0.88757 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.83 101.05 0.99 1.19 16 2 O -0.30 -3.87 10.29 -34.14 -0.35 -4.22 16 3 C 0.05 0.73 6.72 -38.96 -0.26 0.47 16 4 C -0.13 -1.49 9.14 -39.17 -0.36 -1.85 16 5 C -0.17 -1.97 9.70 -39.45 -0.38 -2.35 16 6 C 0.14 2.11 6.29 -82.59 -0.52 1.59 16 7 C 0.11 1.60 5.79 -4.98 -0.03 1.57 16 8 N -0.66 -10.85 5.69 -108.00 -0.61 -11.47 16 9 C 0.09 1.41 2.59 -67.72 -0.18 1.24 16 10 H 0.07 1.28 7.80 -51.93 -0.41 0.87 16 11 C -0.18 -2.34 9.16 37.16 0.34 -2.00 16 12 C -0.10 -2.04 4.83 -26.73 -0.13 -2.17 16 13 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 14 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 18 Si 0.88 22.40 29.54 -169.99 -5.02 17.38 16 19 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 N -0.48 -8.11 9.13 -9.43 -0.09 -8.20 16 23 C 0.31 5.06 7.50 -17.00 -0.13 4.93 16 24 O -0.30 -4.99 10.27 -33.38 -0.34 -5.33 16 25 C 0.04 0.56 10.38 101.05 1.05 1.61 16 26 H 0.05 0.35 7.70 -51.93 -0.40 -0.05 16 27 H 0.05 0.32 7.70 -51.93 -0.40 -0.08 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.14 1.08 6.44 -52.49 -0.34 0.74 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.09 1.41 8.06 -51.93 -0.42 1.00 16 32 H 0.04 0.47 7.33 -51.93 -0.38 0.09 16 33 H 0.33 5.00 8.46 -39.29 -0.33 4.66 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 36 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.03 1.00 7.75 -51.93 -0.40 0.59 16 40 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 43 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 44 H 0.06 0.86 8.10 -51.93 -0.42 0.43 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -34.39 366.89 -7.52 -41.91 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.23 Total: 0.49 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.15 Total: -9.07 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.04 Total: -46.69 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -0.69 Total: -9.55 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.39 -7.52 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.785 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds