Wall clock time and date at job start Tue Mar 31 2020 07:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36001 * 116.99998 * 2 1 4 4 C 1.38793 * 120.48786 * 0.02562 * 3 2 1 5 5 C 1.38788 * 118.43391 * 179.97438 * 4 3 2 6 6 C 1.38044 * 119.33227 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.53380 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47741 * 95.01928 * 7 6 5 9 9 C 1.46890 * 111.00397 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47478 * 325.00064 * 9 8 7 11 11 C 1.53007 * 109.47165 * 85.00140 * 9 8 7 12 12 C 1.52998 * 109.47377 * 205.00018 * 9 8 7 13 13 C 1.53004 * 109.47186 * 65.00007 * 12 9 8 14 14 C 1.50699 * 109.47396 * 180.02562 * 13 12 9 15 15 H 1.07998 * 119.99752 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00082 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00061 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46936 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47214 * 119.99286 * 18 16 14 21 21 H 1.48503 * 109.46809 * 239.99459 * 18 16 14 22 22 N 1.31994 * 120.93783 * 0.02562 * 6 5 4 23 23 C 1.32161 * 121.70515 * 359.97438 * 22 6 5 24 24 O 1.35760 * 119.72087 * 180.02562 * 23 22 6 25 25 C 1.42900 * 116.99636 * 359.97438 * 24 23 22 26 26 H 1.08998 * 109.46879 * 300.00177 * 1 2 3 27 27 H 1.09000 * 109.47261 * 59.99603 * 1 2 3 28 28 H 1.08998 * 109.47571 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.78751 * 359.95658 * 4 3 2 30 30 H 1.08002 * 120.33191 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.47256 * 215.02597 * 7 6 5 32 32 H 1.09003 * 109.46741 * 335.02056 * 7 6 5 33 33 H 1.00905 * 110.99732 * 303.96312 * 8 7 6 34 34 H 1.08997 * 109.47526 * 179.97438 * 11 9 8 35 35 H 1.08992 * 109.47235 * 300.00267 * 11 9 8 36 36 H 1.09003 * 109.46837 * 59.99917 * 11 9 8 37 37 H 1.08997 * 109.47558 * 185.00077 * 12 9 8 38 38 H 1.09005 * 109.47349 * 305.00526 * 12 9 8 39 39 H 1.08997 * 109.46929 * 300.00455 * 13 12 9 40 40 H 1.09005 * 109.46553 * 60.00031 * 13 12 9 41 41 H 0.97000 * 120.00067 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.47197 * 60.00573 * 25 24 23 43 43 H 1.09007 * 109.47252 * 180.02562 * 25 24 23 44 44 H 1.08993 * 109.47672 * 300.00653 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.3005 2.3822 0.0005 5 6 1.9745 3.5954 0.0011 6 6 3.3549 3.6021 0.0016 7 6 4.0914 4.9169 0.0027 8 7 4.4359 5.2841 1.3827 9 6 5.1560 6.5638 1.4228 10 1 5.7934 6.6498 0.5429 11 6 4.1488 7.7155 1.4376 12 6 6.0184 6.6244 2.6851 13 6 7.1057 5.5503 2.6121 14 6 7.9548 5.6096 3.8557 15 1 7.7406 6.3405 4.6214 16 6 9.0056 4.7314 4.0154 17 7 9.2666 3.8417 3.0827 18 14 10.0576 4.8044 5.5573 19 1 9.5599 5.8854 6.4454 20 1 9.9823 3.5037 6.2699 21 1 11.4673 5.0823 5.1819 22 7 4.0390 2.4733 0.0011 23 6 3.4374 1.2966 0.0006 24 8 4.1808 0.1606 0.0006 25 6 5.6014 0.3150 0.0006 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.2210 2.3497 0.0003 30 1 1.4245 4.5249 0.0019 31 1 5.0034 4.8231 -0.5868 32 1 3.4563 5.6894 -0.4310 33 1 3.6125 5.3143 1.9651 34 1 4.6830 8.6651 1.4678 35 1 3.5344 7.6724 0.5384 36 1 3.5114 7.6294 2.3176 37 1 6.4833 7.6073 2.7608 38 1 5.3934 6.4496 3.5610 39 1 6.6408 4.5674 2.5364 40 1 7.7306 5.7251 1.7362 41 1 10.0056 3.2236 3.1953 42 1 5.9071 0.8650 0.8906 43 1 6.0737 -0.6674 0.0001 44 1 5.9071 0.8652 -0.8893 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:06 Heat of formation + Delta-G solvation = -71.266158 kcal Electronic energy + Delta-G solvation = -23644.564975 eV Core-core repulsion = 20175.581292 eV Total energy + Delta-G solvation = -3468.983683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95689 -39.51194 -39.19853 -38.11116 -35.33440 -33.58981 -32.93859 -31.54728 -30.26021 -28.46036 -28.10087 -26.98879 -25.75017 -24.05401 -23.21157 -22.67672 -21.36586 -19.41442 -18.86172 -18.38364 -18.16601 -17.37232 -16.63142 -16.47121 -16.23636 -16.19595 -15.85093 -15.31380 -14.97833 -14.64664 -14.53382 -14.40093 -14.26053 -13.98492 -13.63911 -13.39851 -13.10066 -12.95887 -12.85834 -12.80575 -12.50325 -12.31419 -12.28881 -12.25240 -12.13759 -11.75937 -11.50949 -11.19819 -10.95307 -10.68431 -10.58200 -10.48389 -9.13953 -8.93338 -8.12360 -6.23302 0.11362 0.22226 1.38567 1.39684 1.52602 2.03474 2.31329 2.43639 2.61786 3.19345 3.21610 3.49236 3.75837 3.90308 4.00133 4.10087 4.25872 4.35511 4.38013 4.38807 4.41911 4.42925 4.50966 4.54228 4.74016 4.75106 4.76604 4.82852 4.91483 4.99812 5.02356 5.09383 5.15454 5.33545 5.38421 5.50040 5.60543 5.90219 5.95028 6.05393 6.26924 6.35758 6.41318 6.65445 6.94547 6.97544 7.44696 8.98913 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.003873 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.270719 B = 7228.257175 C = 8649.787611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.051 3.949 4 C -0.123 4.123 5 C -0.149 4.149 6 C 0.117 3.883 7 C 0.121 3.879 8 N -0.688 5.688 9 C 0.093 3.907 10 H 0.060 0.940 11 C -0.167 4.167 12 C -0.088 4.088 13 C 0.040 3.960 14 C -0.542 4.542 15 H 0.056 0.944 16 C -0.003 4.003 17 N -0.932 5.932 18 Si 0.961 3.039 19 H -0.261 1.261 20 H -0.280 1.280 21 H -0.278 1.278 22 N -0.514 5.514 23 C 0.265 3.735 24 O -0.317 6.317 25 C 0.046 3.954 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.187 0.813 30 H 0.177 0.823 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.344 0.656 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.046 0.954 39 H -0.002 1.002 40 H -0.026 1.026 41 H 0.260 0.740 42 H 0.036 0.964 43 H 0.123 0.877 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.239 -1.468 -9.261 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.002 3.998 4 C -0.149 4.149 5 C -0.170 4.170 6 C -0.020 4.020 7 C -0.008 4.008 8 N -0.321 5.321 9 C -0.017 4.017 10 H 0.079 0.921 11 C -0.226 4.226 12 C -0.126 4.126 13 C 0.003 3.997 14 C -0.580 4.580 15 H 0.074 0.926 16 C -0.200 4.200 17 N -0.572 5.572 18 Si 0.786 3.214 19 H -0.185 1.185 20 H -0.206 1.206 21 H -0.203 1.203 22 N -0.238 5.238 23 C 0.084 3.916 24 O -0.225 6.225 25 C -0.049 4.049 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.136 0.864 29 H 0.204 0.796 30 H 0.194 0.806 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.016 0.984 40 H -0.007 1.007 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.141 0.859 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.641 -2.426 -9.299 22.768 hybrid contribution -0.206 0.343 0.534 0.667 sum -20.847 -2.083 -8.765 22.710 Atomic orbital electron populations 1.23449 0.75924 1.05894 1.02708 1.86177 1.23773 1.25160 1.88909 1.19117 0.89240 0.87380 1.04048 1.21883 1.02204 0.89691 1.01087 1.22013 0.93216 1.00128 1.01607 1.21020 0.91835 0.92055 0.97055 1.20710 0.98663 0.90639 0.90833 1.60262 1.29197 1.33170 1.09426 1.21520 0.94916 0.87302 0.97951 0.92128 1.22384 0.99205 0.98513 1.02486 1.21459 0.96409 0.98119 0.96611 1.18799 0.92496 0.94720 0.93690 1.21850 1.13896 1.16726 1.05511 0.92605 1.25982 0.99138 0.95102 0.99828 1.70152 1.30573 1.20832 1.35690 0.85463 0.78403 0.78142 0.79404 1.18504 1.20633 1.20330 1.67183 1.41539 0.98060 1.17051 1.19533 0.87367 0.85840 0.98821 1.86241 1.20803 1.26994 1.88465 1.22866 0.76680 1.03926 1.01460 0.91249 0.90844 0.86437 0.79613 0.80552 0.92051 0.90101 0.83733 0.91710 0.91068 0.91845 0.92988 0.93560 0.98352 1.00749 0.93153 0.94508 0.85931 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.83 113.37 1.11 1.29 16 2 O -0.33 -8.04 10.29 -79.80 -0.82 -8.87 16 3 C 0.05 1.37 6.72 22.67 0.15 1.52 16 4 C -0.12 -2.34 9.14 22.53 0.21 -2.13 16 5 C -0.15 -2.98 9.70 22.36 0.22 -2.76 16 6 C 0.12 3.36 6.29 42.49 0.27 3.63 16 7 C 0.12 3.38 5.79 85.56 0.50 3.88 16 8 N -0.69 -22.61 5.69 -495.60 -2.82 -25.43 16 9 C 0.09 3.04 2.59 44.92 0.12 3.16 16 10 H 0.06 2.13 7.80 -2.39 -0.02 2.12 16 11 C -0.17 -3.81 9.16 71.98 0.66 -3.15 16 12 C -0.09 -3.72 4.83 30.59 0.15 -3.58 16 13 C 0.04 2.26 4.86 29.85 0.15 2.41 16 14 C -0.54 -32.71 9.11 25.60 0.23 -32.48 16 15 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.93 -60.15 13.29 21.44 0.28 -59.86 16 18 Si 0.96 46.60 29.54 68.60 2.03 48.63 16 19 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 N -0.51 -18.54 9.13 -296.63 -2.71 -21.25 16 23 C 0.27 9.13 7.50 84.91 0.64 9.76 16 24 O -0.32 -11.26 10.27 -77.10 -0.79 -12.05 16 25 C 0.05 1.50 10.38 113.37 1.18 2.67 16 26 H 0.07 0.64 7.70 -2.39 -0.02 0.62 16 27 H 0.07 0.60 7.70 -2.39 -0.02 0.58 16 28 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.19 1.83 6.44 -2.91 -0.02 1.81 16 30 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 32 H 0.08 1.60 7.33 -2.39 -0.02 1.58 16 33 H 0.34 9.86 8.46 -89.69 -0.76 9.10 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 36 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.00 -0.12 7.75 -2.39 -0.02 -0.14 16 40 H -0.03 -1.60 8.14 -2.38 -0.02 -1.62 16 41 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 42 H 0.04 1.41 8.11 -2.38 -0.02 1.39 16 43 H 0.12 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -80.51 366.89 1.42 -79.09 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.22 Total: 15.26 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 6.03 Total: -15.52 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -5.24 Total: -106.54 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.61 Total: -20.91 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -80.51 1.42 -79.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.822 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds