Wall clock time and date at job start Tue Mar 31 2020 07:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00210 * 2 1 4 4 C 1.53002 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47277 * 64.99647 * 4 3 2 6 6 C 1.35954 * 119.43716 * 270.02699 * 5 4 3 7 7 C 1.34932 * 120.89954 * 179.71017 * 6 5 4 8 8 C 1.41142 * 119.76796 * 0.51954 * 7 6 5 9 9 N 1.38301 * 120.53677 * 179.75909 * 8 7 6 10 10 C 1.46492 * 120.00352 * 359.72790 * 9 8 7 11 11 H 1.09001 * 109.47360 * 34.99174 * 10 9 8 12 12 C 1.53009 * 109.46798 * 274.99815 * 10 9 8 13 13 C 1.52999 * 109.47631 * 154.99870 * 10 9 8 14 14 C 1.53006 * 109.46623 * 294.99736 * 13 10 9 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 10 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.38566 * 118.92271 * 359.48989 * 8 7 6 24 24 C 1.34580 * 119.43195 * 90.00312 * 5 4 3 25 25 O 1.22139 * 119.91469 * 0.02562 * 24 5 4 26 26 H 1.08999 * 109.47056 * 59.99410 * 1 2 3 27 27 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46849 * 299.99953 * 1 2 3 29 29 H 1.08996 * 109.47546 * 59.99969 * 3 2 1 30 30 H 1.09009 * 109.46970 * 300.00355 * 3 2 1 31 31 H 1.09006 * 109.46678 * 304.99724 * 4 3 2 32 32 H 1.08995 * 109.46983 * 185.00326 * 4 3 2 33 33 H 1.08005 * 119.55290 * 359.97343 * 6 5 4 34 34 H 1.08003 * 120.11576 * 180.28109 * 7 6 5 35 35 H 0.97002 * 119.99843 * 179.72140 * 9 8 7 36 36 H 1.08999 * 109.47112 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46642 * 299.99799 * 12 10 9 38 38 H 1.08998 * 109.46901 * 60.00034 * 12 10 9 39 39 H 1.09000 * 109.47486 * 174.99907 * 13 10 9 40 40 H 1.09001 * 109.47362 * 54.99184 * 13 10 9 41 41 H 1.08993 * 109.46955 * 300.00075 * 14 13 10 42 42 H 1.09000 * 109.47050 * 59.99904 * 14 13 10 43 43 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 44 44 H 1.07989 * 120.44894 * 180.22802 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.0916 -0.7884 -1.3236 7 6 4.4889 -1.3910 -2.4636 8 6 4.8001 -0.6101 -3.5974 9 7 5.2136 -1.2109 -4.7724 10 6 5.3374 -2.6687 -4.8457 11 1 4.5579 -3.1305 -4.2398 12 6 6.7103 -3.0911 -4.3186 13 6 5.1882 -3.1209 -6.2997 14 6 3.7717 -2.8099 -6.7876 15 6 3.6249 -3.2547 -8.2200 16 1 4.4586 -3.7129 -8.7313 17 6 2.4266 -3.0757 -8.8781 18 7 1.4115 -2.5172 -8.2555 19 14 2.2443 -3.6277 -10.6532 20 1 2.4890 -5.0894 -10.7448 21 1 0.8697 -3.3258 -11.1269 22 1 3.2293 -2.9070 -11.4994 23 6 4.6792 0.7679 -3.5157 24 6 4.2582 1.3434 -2.3131 25 8 4.1466 2.5565 -2.2247 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8410 32 1 3.9786 2.1765 0.0890 33 1 3.8583 -1.3892 -0.4569 34 1 4.5721 -2.4670 -2.5072 35 1 5.4217 -0.6669 -5.5482 36 1 6.8026 -4.1758 -4.3736 37 1 7.4899 -2.6293 -4.9246 38 1 6.8166 -2.7690 -3.2828 39 1 5.3682 -4.1938 -6.3670 40 1 5.9108 -2.5915 -6.9209 41 1 3.0492 -3.3391 -6.1665 42 1 3.5917 -1.7370 -6.7204 43 1 0.5684 -2.3917 -8.7184 44 1 4.9073 1.3888 -4.3693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:58 Heat of formation + Delta-G solvation = -62.850493 kcal Electronic energy + Delta-G solvation = -23705.947316 eV Core-core repulsion = 20237.328564 eV Total energy + Delta-G solvation = -3468.618752 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02407 -38.27945 -37.76874 -36.15952 -34.47084 -32.91449 -31.40859 -29.72743 -29.28142 -28.54155 -26.47870 -25.23119 -23.64968 -23.47818 -22.05076 -21.09614 -20.10942 -17.64064 -17.26894 -16.92512 -16.43798 -16.21611 -16.08239 -15.53490 -15.06787 -14.82553 -14.56584 -14.44372 -13.67531 -13.41147 -13.35332 -13.05292 -12.74286 -12.56658 -12.46269 -12.29322 -12.16268 -11.85799 -11.58769 -11.44094 -11.34837 -11.19519 -10.94100 -10.71521 -10.52394 -10.38132 -9.95536 -9.90536 -9.56466 -9.37437 -9.10676 -8.37820 -8.02552 -7.33785 -6.02039 -4.05681 1.34042 2.35104 2.88212 3.31091 3.36302 3.37939 3.51630 3.67696 4.09149 4.43179 4.64340 4.72962 4.84161 4.98816 5.15611 5.20065 5.20706 5.23517 5.33518 5.36201 5.43199 5.46005 5.51807 5.55054 5.61413 5.70802 5.88965 6.02884 6.09580 6.24808 6.32280 6.42770 6.54185 6.63512 6.66072 6.86836 6.98342 7.46477 7.55965 7.63544 7.76359 7.92498 7.96940 8.37582 8.51124 9.01465 9.58892 11.08718 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.003543 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.777871 B = 7901.048991 C = 8738.670417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.044 3.956 4 C 0.100 3.900 5 N -0.510 5.510 6 C 0.169 3.831 7 C -0.260 4.260 8 C 0.315 3.685 9 N -0.701 5.701 10 C 0.136 3.864 11 H 0.080 0.920 12 C -0.166 4.166 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.526 4.526 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.379 4.379 24 C 0.536 3.464 25 O -0.584 6.584 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.014 0.986 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 2.043 19.304 19.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.034 4.034 4 C -0.022 4.022 5 N -0.223 5.223 6 C 0.042 3.958 7 C -0.286 4.286 8 C 0.199 3.801 9 N -0.323 5.323 10 C 0.031 3.969 11 H 0.098 0.902 12 C -0.224 4.224 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.564 4.564 16 H 0.072 0.928 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.409 4.409 24 C 0.344 3.656 25 O -0.470 6.470 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.347 2.463 19.334 19.969 hybrid contribution -0.481 -0.002 -1.445 1.523 sum 3.866 2.461 17.889 18.467 Atomic orbital electron populations 1.22738 0.80561 1.02980 1.00003 1.87834 1.20162 1.27488 1.95490 1.22931 0.93446 0.85454 1.01544 1.21875 0.93233 1.01528 0.85583 1.45385 1.56886 1.06454 1.13580 1.21539 0.92074 0.83281 0.98934 1.20432 1.15066 1.00606 0.92511 1.18241 0.84347 0.91603 0.85936 1.44897 1.68785 1.07191 1.11450 1.21319 0.96447 0.79455 0.99682 0.90183 1.22299 0.97761 1.01442 1.00903 1.21968 1.01760 1.00564 0.91475 1.19086 0.89376 0.97266 0.95662 1.21200 0.97513 1.40132 0.97579 0.92815 1.25017 0.96014 0.95217 0.98053 1.69958 1.02749 1.43464 1.36953 0.86679 0.77134 0.79128 0.85180 1.20258 1.21285 1.20260 1.21175 1.26798 0.92832 1.00083 1.16441 0.79220 0.86717 0.83259 1.90883 1.59085 1.13340 1.83736 0.93849 0.89406 0.94183 0.91843 0.92129 0.88849 0.87065 0.82346 0.83803 0.75751 0.91749 0.92537 0.92795 0.91647 0.92744 0.96723 0.96238 0.92917 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.29 10.14 -35.23 -0.36 -4.64 16 3 C 0.04 0.45 6.28 37.16 0.23 0.68 16 4 C 0.10 1.01 5.75 -4.04 -0.02 0.98 16 5 N -0.51 -6.76 2.57 -120.07 -0.31 -7.07 16 6 C 0.17 1.94 9.72 -16.90 -0.16 1.77 16 7 C -0.26 -3.36 8.82 -39.65 -0.35 -3.71 16 8 C 0.31 4.86 6.66 -83.72 -0.56 4.31 16 9 N -0.70 -10.83 4.65 -52.01 -0.24 -11.07 16 10 C 0.14 2.02 2.27 -67.93 -0.15 1.86 16 11 H 0.08 1.21 6.48 -51.93 -0.34 0.87 16 12 C -0.17 -1.98 9.46 37.16 0.35 -1.63 16 13 C -0.12 -2.21 4.69 -26.73 -0.13 -2.33 16 14 C 0.02 0.57 4.86 -27.88 -0.14 0.43 16 15 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 16 16 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.38 -6.52 9.88 -38.87 -0.38 -6.90 16 24 C 0.54 9.27 7.38 -15.76 -0.12 9.16 16 25 O -0.58 -11.75 16.61 4.79 0.08 -11.68 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.09 0.65 8.00 -51.93 -0.42 0.24 16 32 H 0.11 1.15 7.37 -51.93 -0.38 0.77 16 33 H 0.16 1.27 8.03 -52.48 -0.42 0.85 16 34 H 0.14 1.62 6.29 -52.48 -0.33 1.29 16 35 H 0.41 6.38 8.61 -40.82 -0.35 6.03 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.59 7.80 -51.93 -0.40 0.19 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.51 7.75 -51.93 -0.40 0.11 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.14 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -34.18 365.34 -7.57 -41.75 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -7.24 Total: 3.98 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.72 Total: -7.22 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.19 Total: -44.16 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.28 Total: -16.32 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.18 -7.57 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.105 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds