Wall clock time and date at job start Tue Mar 31 2020 07:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00210 * 2 1 4 4 C 1.53002 * 109.47449 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47277 * 64.99647 * 4 3 2 6 6 C 1.35954 * 119.43716 * 270.02699 * 5 4 3 7 7 C 1.34932 * 120.89954 * 179.71017 * 6 5 4 8 8 C 1.41142 * 119.76796 * 0.51954 * 7 6 5 9 9 N 1.38301 * 120.53677 * 179.75909 * 8 7 6 10 10 C 1.46492 * 120.00352 * 359.72790 * 9 8 7 11 11 H 1.09001 * 109.47360 * 34.99174 * 10 9 8 12 12 C 1.53009 * 109.46798 * 274.99815 * 10 9 8 13 13 C 1.52999 * 109.47631 * 154.99870 * 10 9 8 14 14 C 1.53006 * 109.46623 * 294.99736 * 13 10 9 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 10 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47325 * 59.99531 * 19 17 15 21 21 H 1.48496 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47183 * 299.99726 * 19 17 15 23 23 C 1.38566 * 118.92271 * 359.48989 * 8 7 6 24 24 C 1.34580 * 119.43195 * 90.00312 * 5 4 3 25 25 O 1.22139 * 119.91469 * 0.02562 * 24 5 4 26 26 H 1.08999 * 109.47056 * 59.99410 * 1 2 3 27 27 H 1.09000 * 109.46937 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46849 * 299.99953 * 1 2 3 29 29 H 1.08996 * 109.47546 * 59.99969 * 3 2 1 30 30 H 1.09009 * 109.46970 * 300.00355 * 3 2 1 31 31 H 1.09006 * 109.46678 * 304.99724 * 4 3 2 32 32 H 1.08995 * 109.46983 * 185.00326 * 4 3 2 33 33 H 1.08005 * 119.55290 * 359.97343 * 6 5 4 34 34 H 1.08003 * 120.11576 * 180.28109 * 7 6 5 35 35 H 0.97002 * 119.99843 * 179.72140 * 9 8 7 36 36 H 1.08999 * 109.47112 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46642 * 299.99799 * 12 10 9 38 38 H 1.08998 * 109.46901 * 60.00034 * 12 10 9 39 39 H 1.09000 * 109.47486 * 174.99907 * 13 10 9 40 40 H 1.09001 * 109.47362 * 54.99184 * 13 10 9 41 41 H 1.08993 * 109.46955 * 300.00075 * 14 13 10 42 42 H 1.09000 * 109.47050 * 59.99904 * 14 13 10 43 43 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 44 44 H 1.07989 * 120.44894 * 180.22802 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9758 0.5644 -1.2527 6 6 4.0916 -0.7884 -1.3236 7 6 4.4889 -1.3910 -2.4636 8 6 4.8001 -0.6101 -3.5974 9 7 5.2136 -1.2109 -4.7724 10 6 5.3374 -2.6687 -4.8457 11 1 4.5579 -3.1305 -4.2398 12 6 6.7103 -3.0911 -4.3186 13 6 5.1882 -3.1209 -6.2997 14 6 3.7717 -2.8099 -6.7876 15 6 3.6249 -3.2547 -8.2200 16 1 4.4586 -3.7129 -8.7313 17 6 2.4266 -3.0757 -8.8781 18 7 1.4115 -2.5172 -8.2555 19 14 2.2443 -3.6277 -10.6532 20 1 2.4890 -5.0894 -10.7448 21 1 0.8697 -3.3258 -11.1269 22 1 3.2293 -2.9070 -11.4994 23 6 4.6792 0.7679 -3.5157 24 6 4.2582 1.3434 -2.3131 25 8 4.1466 2.5565 -2.2247 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6887 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8515 0.5682 0.8410 32 1 3.9786 2.1765 0.0890 33 1 3.8583 -1.3892 -0.4569 34 1 4.5721 -2.4670 -2.5072 35 1 5.4217 -0.6669 -5.5482 36 1 6.8026 -4.1758 -4.3736 37 1 7.4899 -2.6293 -4.9246 38 1 6.8166 -2.7690 -3.2828 39 1 5.3682 -4.1938 -6.3670 40 1 5.9108 -2.5915 -6.9209 41 1 3.0492 -3.3391 -6.1665 42 1 3.5917 -1.7370 -6.7204 43 1 0.5684 -2.3917 -8.7184 44 1 4.9073 1.3888 -4.3693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:58 Heat of formation + Delta-G solvation = -85.433049 kcal Electronic energy + Delta-G solvation = -23706.926569 eV Core-core repulsion = 20237.328564 eV Total energy + Delta-G solvation = -3469.598005 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16156 -39.40273 -38.74361 -37.42400 -35.91002 -34.68411 -32.64382 -31.25676 -30.39669 -29.65882 -27.25471 -26.99793 -24.73132 -24.54820 -23.43912 -22.52035 -21.45148 -18.77910 -18.57466 -18.21106 -17.96923 -17.26478 -17.01648 -16.58889 -16.48604 -16.12993 -16.06528 -15.49335 -14.84944 -14.79590 -14.58583 -14.32994 -14.13724 -13.96790 -13.54722 -13.38635 -13.15886 -13.00238 -12.88533 -12.84668 -12.77486 -12.46336 -12.35131 -12.17392 -11.96750 -11.74143 -11.53535 -11.28123 -11.01010 -10.95338 -10.66670 -10.54611 -9.12052 -8.65154 -8.19505 -6.30804 0.24030 1.15581 1.39167 1.41417 1.49281 1.86982 2.40255 2.44215 2.71248 2.93830 3.14070 3.77838 3.91285 3.95527 4.02353 4.17685 4.28500 4.29935 4.33853 4.42571 4.47463 4.50428 4.54796 4.68633 4.74398 4.76492 4.78650 4.86976 4.96264 5.00223 5.10649 5.23949 5.26122 5.29560 5.44408 5.53051 5.61601 5.75648 5.87800 6.09899 6.24581 6.30334 6.38731 6.62972 6.88432 7.24731 7.39002 8.91330 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.003543 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.777871 B = 7901.048991 C = 8738.670417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.403 6.403 3 C 0.046 3.954 4 C 0.095 3.905 5 N -0.507 5.507 6 C 0.191 3.809 7 C -0.278 4.278 8 C 0.321 3.679 9 N -0.706 5.706 10 C 0.142 3.858 11 H 0.082 0.918 12 C -0.155 4.155 13 C -0.108 4.108 14 C 0.028 3.972 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.960 3.040 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.269 1.269 23 C -0.418 4.418 24 C 0.526 3.474 25 O -0.628 6.628 26 H 0.028 0.972 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.025 0.975 31 H 0.137 0.863 32 H 0.104 0.896 33 H 0.207 0.793 34 H 0.167 0.833 35 H 0.401 0.599 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.056 0.944 41 H -0.012 1.012 42 H -0.010 1.010 43 H 0.261 0.739 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -0.232 20.969 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C -0.031 4.031 4 C -0.026 4.026 5 N -0.218 5.218 6 C 0.063 3.937 7 C -0.303 4.303 8 C 0.205 3.795 9 N -0.327 5.327 10 C 0.038 3.962 11 H 0.100 0.900 12 C -0.213 4.213 13 C -0.145 4.145 14 C -0.009 4.009 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.194 1.194 23 C -0.447 4.447 24 C 0.334 3.666 25 O -0.518 6.518 26 H 0.046 0.954 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.044 0.956 31 H 0.155 0.845 32 H 0.123 0.877 33 H 0.224 0.776 34 H 0.185 0.815 35 H 0.236 0.764 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.006 0.994 42 H 0.009 0.991 43 H 0.070 0.930 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.198 0.152 21.014 21.648 hybrid contribution -0.787 0.674 -1.935 2.195 sum 4.411 0.826 19.080 19.600 Atomic orbital electron populations 1.22871 0.79686 1.03835 1.00351 1.87784 1.21181 1.27668 1.95559 1.22911 0.93486 0.85338 1.01359 1.22185 0.93104 1.02124 0.85143 1.45399 1.55629 1.07131 1.13644 1.22260 0.89072 0.82499 0.99889 1.20709 1.16063 1.01565 0.91997 1.18433 0.83264 0.91167 0.86685 1.45026 1.68646 1.07565 1.11458 1.21283 0.98770 0.78858 0.97336 0.89974 1.22195 0.95078 1.02511 1.01517 1.21780 0.97504 1.01420 0.93840 1.18959 0.92667 0.94855 0.94391 1.21736 0.97729 1.39616 0.99092 0.92014 1.25955 0.95779 0.95308 1.02751 1.70107 1.03325 1.45027 1.38919 0.85573 0.77078 0.79257 0.79587 1.18873 1.21262 1.19378 1.21116 1.29600 0.93824 1.00178 1.16461 0.79392 0.86463 0.84264 1.90835 1.61251 1.15046 1.84692 0.95367 0.88341 0.92011 0.88741 0.95637 0.84468 0.87731 0.77607 0.81546 0.76414 0.89984 0.92576 0.91248 0.90458 0.92491 0.99372 0.99128 0.93015 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -7.92 10.14 -148.98 -1.51 -9.44 16 3 C 0.05 0.88 6.28 71.98 0.45 1.33 16 4 C 0.10 1.73 5.75 86.38 0.50 2.22 16 5 N -0.51 -12.89 2.57 -651.94 -1.68 -14.57 16 6 C 0.19 3.81 9.72 83.29 0.81 4.62 16 7 C -0.28 -6.62 8.82 22.22 0.20 -6.43 16 8 C 0.32 10.01 6.66 38.91 0.26 10.27 16 9 N -0.71 -22.02 4.65 -318.48 -1.48 -23.50 16 10 C 0.14 4.02 2.27 45.00 0.10 4.13 16 11 H 0.08 2.33 6.48 -2.39 -0.02 2.31 16 12 C -0.15 -3.23 9.46 71.99 0.68 -2.55 16 13 C -0.11 -3.88 4.69 30.60 0.14 -3.74 16 14 C 0.03 1.43 4.86 29.85 0.15 1.57 16 15 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 16 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 17 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 18 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 19 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 C -0.42 -15.25 9.88 22.73 0.22 -15.02 16 24 C 0.53 18.91 7.38 84.65 0.62 19.53 16 25 O -0.63 -26.81 16.61 -5.77 -0.10 -26.91 16 26 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.14 1.31 8.00 -2.38 -0.02 1.29 16 32 H 0.10 2.09 7.37 -2.39 -0.02 2.07 16 33 H 0.21 2.18 8.03 -2.91 -0.02 2.16 16 34 H 0.17 3.19 6.29 -2.91 -0.02 3.17 16 35 H 0.40 13.19 8.61 -92.71 -0.80 12.40 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.07 1.27 7.80 -2.39 -0.02 1.26 16 39 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H -0.01 -0.54 7.75 -2.39 -0.02 -0.56 16 43 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.11 4.49 8.06 -2.92 -0.02 4.47 16 Total: -1.00 -78.15 365.34 3.81 -74.34 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 0.18 Total: 22.78 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 6.08 Total: -11.85 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -2.87 Total: -95.10 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.61 Total: -36.34 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -78.15 3.81 -74.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.089 kcal (2) G-P(sol) polarization free energy of solvation -78.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds