Wall clock time and date at job start Tue Mar 31 2020 07:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 113.99946 * 2 1 4 4 C 1.53000 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47503 * 65.00325 * 4 3 2 6 6 C 1.35955 * 119.44131 * 89.99658 * 5 4 3 7 7 C 1.34919 * 120.90257 * 180.02562 * 6 5 4 8 8 C 1.41141 * 119.77030 * 359.97438 * 7 6 5 9 9 N 1.38309 * 120.53892 * 179.97438 * 8 7 6 10 10 C 1.46501 * 119.99826 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.47216 * 325.00237 * 10 9 8 12 12 C 1.53002 * 109.46911 * 84.99891 * 10 9 8 13 13 C 1.52994 * 109.47141 * 205.00178 * 10 9 8 14 14 C 1.53001 * 109.47367 * 65.00319 * 13 10 9 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 C 1.38562 * 118.92107 * 0.24660 * 8 7 6 24 24 C 1.34580 * 119.43355 * 270.02201 * 5 4 3 25 25 O 1.22144 * 119.91003 * 0.02562 * 24 5 4 26 26 H 1.09001 * 109.46965 * 299.99546 * 1 2 3 27 27 H 1.09007 * 109.47355 * 59.99842 * 1 2 3 28 28 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47217 * 60.00186 * 3 2 1 30 30 H 1.09000 * 109.47603 * 299.99994 * 3 2 1 31 31 H 1.09002 * 109.47090 * 304.99808 * 4 3 2 32 32 H 1.09009 * 109.46920 * 185.00331 * 4 3 2 33 33 H 1.08004 * 119.54511 * 0.03060 * 6 5 4 34 34 H 1.08000 * 120.11674 * 179.97438 * 7 6 5 35 35 H 0.96995 * 119.99673 * 0.02562 * 9 8 7 36 36 H 1.08994 * 109.47486 * 300.00049 * 12 10 9 37 37 H 1.09007 * 109.46897 * 60.00152 * 12 10 9 38 38 H 1.08994 * 109.47060 * 179.97438 * 12 10 9 39 39 H 1.08998 * 109.47353 * 305.00097 * 13 10 9 40 40 H 1.09006 * 109.47395 * 185.00353 * 13 10 9 41 41 H 1.08998 * 109.47065 * 59.99602 * 14 13 10 42 42 H 1.09001 * 109.46892 * 299.99866 * 14 13 10 43 43 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.44636 * 179.73244 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2610 1.3513 -2.3240 7 6 4.6684 0.8114 -3.4915 8 6 4.8022 -0.5888 -3.6071 9 7 5.2180 -1.1592 -4.7965 10 6 5.3534 -2.6141 -4.9032 11 1 5.7005 -3.0175 -3.9518 12 6 3.9965 -3.2282 -5.2529 13 6 6.3647 -2.9531 -6.0001 14 6 7.7494 -2.4467 -5.5915 15 6 8.7453 -2.7800 -6.6723 16 1 8.4238 -3.3049 -7.5596 17 6 10.0681 -2.4195 -6.5258 18 7 10.4595 -1.7798 -5.4455 19 14 11.3040 -2.8395 -7.8621 20 1 10.6155 -3.5558 -8.9657 21 1 11.9111 -1.5895 -8.3854 22 1 12.3680 -3.7076 -7.2969 23 6 4.5048 -1.3832 -2.5114 24 6 4.0904 -0.7746 -1.3230 25 8 3.8273 -1.4605 -0.3471 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5681 0.8410 32 1 3.9785 2.1765 0.0890 33 1 4.1603 2.4233 -2.2393 34 1 4.8912 1.4485 -4.3346 35 1 5.4207 -0.5960 -5.5597 36 1 3.2760 -2.9868 -4.4715 37 1 3.6494 -2.8248 -6.2043 38 1 4.0973 -4.3106 -5.3328 39 1 6.0635 -2.4751 -6.9323 40 1 6.3998 -4.0334 -6.1407 41 1 8.0506 -2.9246 -4.6593 42 1 7.7143 -1.3663 -5.4510 43 1 11.3900 -1.5258 -5.3427 44 1 4.5944 -2.4576 -2.5739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:01 Heat of formation + Delta-G solvation = -59.140999 kcal Electronic energy + Delta-G solvation = -23712.765026 eV Core-core repulsion = 20244.307130 eV Total energy + Delta-G solvation = -3468.457896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95445 -38.20588 -37.60276 -36.18980 -34.41966 -32.91464 -31.25815 -29.58232 -29.20092 -28.73809 -26.44800 -25.18556 -23.82968 -23.24233 -21.86358 -21.13504 -20.08315 -17.65152 -17.32860 -16.82040 -16.36444 -16.18152 -16.01124 -15.46534 -15.05392 -14.71675 -14.47468 -14.38769 -13.81723 -13.37392 -13.17253 -12.91440 -12.80040 -12.64607 -12.37478 -12.32369 -12.07294 -11.82374 -11.50564 -11.38562 -11.32312 -11.09473 -10.94796 -10.69367 -10.45290 -10.27728 -9.88054 -9.86016 -9.41908 -9.33704 -9.05877 -8.37372 -7.98185 -7.27594 -6.01422 -4.04524 1.33431 2.42149 2.91580 3.29059 3.36985 3.40486 3.57043 3.69871 4.16544 4.43815 4.59128 4.77324 4.78444 4.94050 5.02887 5.14253 5.16678 5.30751 5.34340 5.37684 5.46567 5.51318 5.55377 5.60361 5.66107 5.71509 5.95293 6.08136 6.15849 6.34851 6.40294 6.46606 6.61226 6.69776 6.73981 6.99614 7.03243 7.53958 7.54885 7.66373 7.79386 7.98215 8.01334 8.39539 8.67538 9.03230 9.59843 11.09396 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026620 B = 0.003053 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.597948 B = 9168.096440 C = 9647.671811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.095 3.905 5 N -0.513 5.513 6 C 0.146 3.854 7 C -0.252 4.252 8 C 0.302 3.698 9 N -0.701 5.701 10 C 0.138 3.862 11 H 0.082 0.918 12 C -0.165 4.165 13 C -0.119 4.119 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.368 4.368 24 C 0.541 3.459 25 O -0.560 6.560 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.156 0.844 34 H 0.141 0.859 35 H 0.402 0.598 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.015 0.985 42 H 0.018 0.982 43 H 0.260 0.740 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.520 10.291 7.220 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C -0.033 4.033 4 C -0.027 4.027 5 N -0.226 5.226 6 C 0.019 3.981 7 C -0.279 4.279 8 C 0.187 3.813 9 N -0.324 5.324 10 C 0.034 3.966 11 H 0.100 0.900 12 C -0.223 4.223 13 C -0.157 4.157 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.398 4.398 24 C 0.346 3.654 25 O -0.443 6.443 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.238 0.762 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.401 9.525 7.926 22.184 hybrid contribution 0.743 0.427 -1.174 1.453 sum -17.658 9.952 6.752 21.365 Atomic orbital electron populations 1.22732 0.81613 1.02839 0.99356 1.88188 1.18959 1.26080 1.95176 1.22918 0.93695 0.86163 1.00474 1.21871 0.93127 0.99545 0.88147 1.45442 1.57205 1.08538 1.11442 1.21455 0.93683 0.96513 0.86457 1.20322 1.14758 0.93741 0.99064 1.18218 0.85416 0.91247 0.86447 1.44813 1.68777 1.07527 1.11238 1.21283 0.95103 0.79004 1.01254 0.89996 1.22246 0.97713 1.00871 1.01485 1.21967 0.96756 1.01133 0.95853 1.19090 0.89093 0.96586 0.96630 1.21289 0.93285 1.37078 1.04464 0.92720 1.25031 0.98560 0.95236 0.95607 1.69984 1.16569 1.39799 1.26809 0.86567 0.81450 0.78099 0.82065 1.19783 1.21062 1.21011 1.21326 1.25132 1.00523 0.92858 1.16424 0.79395 0.79746 0.89855 1.90910 1.54180 1.60691 1.38549 0.94366 0.94462 0.89627 0.92123 0.93193 0.87604 0.88197 0.82683 0.84110 0.76230 0.92574 0.92769 0.91826 0.92866 0.91683 0.96653 0.96324 0.93068 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.37 -4.79 9.42 -44.44 -0.42 -5.21 16 3 C 0.05 0.41 6.28 37.16 0.23 0.65 16 4 C 0.10 0.94 5.78 -4.04 -0.02 0.92 16 5 N -0.51 -6.69 2.57 -120.08 -0.31 -7.00 16 6 C 0.15 1.51 10.26 -16.90 -0.17 1.33 16 7 C -0.25 -3.04 9.89 -39.66 -0.39 -3.43 16 8 C 0.30 4.64 6.67 -83.72 -0.56 4.09 16 9 N -0.70 -10.84 4.66 -52.01 -0.24 -11.09 16 10 C 0.14 2.28 2.27 -67.93 -0.15 2.13 16 11 H 0.08 1.49 6.51 -51.92 -0.34 1.15 16 12 C -0.16 -2.30 9.42 37.16 0.35 -1.95 16 13 C -0.12 -2.29 4.69 -26.73 -0.13 -2.41 16 14 C 0.02 0.58 4.86 -27.88 -0.14 0.44 16 15 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 19 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 C -0.37 -6.48 8.79 -38.88 -0.34 -6.82 16 24 C 0.54 9.60 6.99 -15.76 -0.11 9.49 16 25 O -0.56 -11.82 15.77 -4.42 -0.07 -11.89 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 1.27 7.37 -51.93 -0.38 0.89 16 32 H 0.10 0.57 8.00 -51.92 -0.42 0.15 16 33 H 0.16 0.87 8.03 -52.48 -0.42 0.45 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.40 5.80 8.62 -40.82 -0.35 5.45 16 36 H 0.06 0.79 7.68 -51.93 -0.40 0.39 16 37 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.14 2.58 6.17 -52.49 -0.32 2.26 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -35.86 363.70 -7.80 -43.66 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.23 Total: 3.05 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -0.73 Total: -7.47 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.19 Total: -44.08 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.49 Total: -17.11 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.86 -7.80 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.484 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds