Wall clock time and date at job start Tue Mar 31 2020 07:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42892 * 113.99946 * 2 1 4 4 C 1.53000 * 109.47023 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47503 * 65.00325 * 4 3 2 6 6 C 1.35955 * 119.44131 * 89.99658 * 5 4 3 7 7 C 1.34919 * 120.90257 * 180.02562 * 6 5 4 8 8 C 1.41141 * 119.77030 * 359.97438 * 7 6 5 9 9 N 1.38309 * 120.53892 * 179.97438 * 8 7 6 10 10 C 1.46501 * 119.99826 * 179.97438 * 9 8 7 11 11 H 1.09007 * 109.47216 * 325.00237 * 10 9 8 12 12 C 1.53002 * 109.46911 * 84.99891 * 10 9 8 13 13 C 1.52994 * 109.47141 * 205.00178 * 10 9 8 14 14 C 1.53001 * 109.47367 * 65.00319 * 13 10 9 15 15 C 1.50697 * 109.46995 * 180.02562 * 14 13 10 16 16 H 1.07991 * 120.00449 * 359.72153 * 15 14 13 17 17 C 1.37885 * 119.99686 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.72095 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.72528 * 17 15 14 20 20 H 1.48490 * 109.47339 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47239 * 120.00108 * 19 17 15 22 22 H 1.48504 * 109.46636 * 239.99667 * 19 17 15 23 23 C 1.38562 * 118.92107 * 0.24660 * 8 7 6 24 24 C 1.34580 * 119.43355 * 270.02201 * 5 4 3 25 25 O 1.22144 * 119.91003 * 0.02562 * 24 5 4 26 26 H 1.09001 * 109.46965 * 299.99546 * 1 2 3 27 27 H 1.09007 * 109.47355 * 59.99842 * 1 2 3 28 28 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47217 * 60.00186 * 3 2 1 30 30 H 1.09000 * 109.47603 * 299.99994 * 3 2 1 31 31 H 1.09002 * 109.47090 * 304.99808 * 4 3 2 32 32 H 1.09009 * 109.46920 * 185.00331 * 4 3 2 33 33 H 1.08004 * 119.54511 * 0.03060 * 6 5 4 34 34 H 1.08000 * 120.11674 * 179.97438 * 7 6 5 35 35 H 0.96995 * 119.99673 * 0.02562 * 9 8 7 36 36 H 1.08994 * 109.47486 * 300.00049 * 12 10 9 37 37 H 1.09007 * 109.46897 * 60.00152 * 12 10 9 38 38 H 1.08994 * 109.47060 * 179.97438 * 12 10 9 39 39 H 1.08998 * 109.47353 * 305.00097 * 13 10 9 40 40 H 1.09006 * 109.47395 * 185.00353 * 13 10 9 41 41 H 1.08998 * 109.47065 * 59.99602 * 14 13 10 42 42 H 1.09001 * 109.46892 * 299.99866 * 14 13 10 43 43 H 0.97000 * 119.99651 * 180.02562 * 18 17 15 44 44 H 1.08001 * 120.44636 * 179.73244 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.2610 1.3513 -2.3240 7 6 4.6684 0.8114 -3.4915 8 6 4.8022 -0.5888 -3.6071 9 7 5.2180 -1.1592 -4.7965 10 6 5.3534 -2.6141 -4.9032 11 1 5.7005 -3.0175 -3.9518 12 6 3.9965 -3.2282 -5.2529 13 6 6.3647 -2.9531 -6.0001 14 6 7.7494 -2.4467 -5.5915 15 6 8.7453 -2.7800 -6.6723 16 1 8.4238 -3.3049 -7.5596 17 6 10.0681 -2.4195 -6.5258 18 7 10.4595 -1.7798 -5.4455 19 14 11.3040 -2.8395 -7.8621 20 1 10.6155 -3.5558 -8.9657 21 1 11.9111 -1.5895 -8.3854 22 1 12.3680 -3.7076 -7.2969 23 6 4.5048 -1.3832 -2.5114 24 6 4.0904 -0.7746 -1.3230 25 8 3.8273 -1.4605 -0.3471 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5681 0.8410 32 1 3.9785 2.1765 0.0890 33 1 4.1603 2.4233 -2.2393 34 1 4.8912 1.4485 -4.3346 35 1 5.4207 -0.5960 -5.5597 36 1 3.2760 -2.9868 -4.4715 37 1 3.6494 -2.8248 -6.2043 38 1 4.0973 -4.3106 -5.3328 39 1 6.0635 -2.4751 -6.9323 40 1 6.3998 -4.0334 -6.1407 41 1 8.0506 -2.9246 -4.6593 42 1 7.7143 -1.3663 -5.4510 43 1 11.3900 -1.5258 -5.3427 44 1 4.5944 -2.4576 -2.5739 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486912.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:00 Heat of formation + Delta-G solvation = -83.335416 kcal Electronic energy + Delta-G solvation = -23713.814175 eV Core-core repulsion = 20244.307130 eV Total energy + Delta-G solvation = -3469.507045 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.06257 -39.34780 -38.60791 -37.45817 -35.88450 -34.67503 -32.56541 -31.02678 -30.48456 -29.76827 -27.23147 -27.00621 -24.91919 -24.22774 -23.37275 -22.45776 -21.54529 -18.79774 -18.50330 -18.21985 -17.86242 -17.19825 -16.93347 -16.55762 -16.43786 -16.22074 -15.82355 -15.37792 -14.96545 -14.77233 -14.62695 -14.25233 -14.13251 -13.85984 -13.57625 -13.36158 -13.17966 -13.05555 -12.88903 -12.79276 -12.73099 -12.39063 -12.30744 -12.12042 -11.98015 -11.70349 -11.52473 -11.26517 -11.00537 -10.81273 -10.55790 -10.55215 -9.04497 -8.60461 -8.19022 -6.30350 0.29230 1.26003 1.39388 1.40667 1.53171 1.95770 2.40846 2.45803 2.86429 3.03378 3.14254 3.83759 3.95520 4.02715 4.06399 4.22869 4.25954 4.30119 4.38843 4.40656 4.43847 4.50180 4.56803 4.66085 4.70356 4.74058 4.83112 4.88925 4.91370 4.96353 5.07931 5.20531 5.29777 5.34133 5.39079 5.52805 5.69706 5.75875 5.87013 6.24479 6.27502 6.31066 6.43276 6.81454 6.88627 7.39215 7.42065 8.92391 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026620 B = 0.003053 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.597948 B = 9168.096440 C = 9647.671811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.041 3.959 4 C 0.088 3.912 5 N -0.511 5.511 6 C 0.172 3.828 7 C -0.275 4.275 8 C 0.309 3.691 9 N -0.701 5.701 10 C 0.145 3.855 11 H 0.055 0.945 12 C -0.152 4.152 13 C -0.104 4.104 14 C 0.030 3.970 15 C -0.541 4.541 16 H 0.062 0.938 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.283 1.283 23 C -0.411 4.411 24 C 0.529 3.471 25 O -0.612 6.612 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.221 0.779 34 H 0.172 0.828 35 H 0.409 0.591 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.068 0.932 41 H -0.024 1.024 42 H 0.002 0.998 43 H 0.262 0.738 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.334 13.036 5.573 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.036 4.036 4 C -0.032 4.032 5 N -0.222 5.222 6 C 0.045 3.955 7 C -0.300 4.300 8 C 0.194 3.806 9 N -0.324 5.324 10 C 0.040 3.960 11 H 0.073 0.927 12 C -0.210 4.210 13 C -0.142 4.142 14 C -0.007 4.007 15 C -0.579 4.579 16 H 0.080 0.920 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.788 3.212 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.209 1.209 23 C -0.441 4.441 24 C 0.335 3.665 25 O -0.501 6.501 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.172 0.828 33 H 0.237 0.763 34 H 0.190 0.810 35 H 0.246 0.754 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.086 0.914 41 H -0.006 1.006 42 H 0.020 0.980 43 H 0.071 0.929 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.234 12.299 6.258 23.673 hybrid contribution 1.001 -0.357 -0.628 1.234 sum -18.233 11.942 5.630 22.511 Atomic orbital electron populations 1.22827 0.80213 1.02830 1.00891 1.88148 1.20828 1.28817 1.95550 1.23136 0.92641 0.85056 1.02745 1.22266 0.94381 1.01090 0.85499 1.45440 1.55956 1.07330 1.13465 1.22412 0.89748 0.98862 0.84466 1.20698 1.16098 0.92034 1.01211 1.18512 0.83916 0.92903 0.85315 1.44770 1.68767 1.07115 1.11730 1.21068 0.95902 0.80097 0.98982 0.92698 1.22115 0.95604 1.01331 1.01999 1.21756 0.94060 1.01217 0.97163 1.18947 0.92098 0.95226 0.94429 1.21751 0.94173 1.36805 1.05135 0.91984 1.25977 1.00875 0.95051 0.97992 1.70125 1.17139 1.41067 1.28974 0.85430 0.78568 0.78052 0.79175 1.18432 1.20286 1.20895 1.21186 1.28572 0.99781 0.94566 1.16459 0.79369 0.81561 0.89066 1.90858 1.56770 1.62454 1.39995 0.92361 0.93225 0.90619 0.89289 0.91183 0.90639 0.82809 0.76268 0.81043 0.75389 0.93056 0.91071 0.90882 0.91228 0.91367 1.00592 0.97990 0.92944 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -10.78 9.42 -140.18 -1.32 -12.10 16 3 C 0.04 0.64 6.28 71.98 0.45 1.10 16 4 C 0.09 1.56 5.78 86.38 0.50 2.05 16 5 N -0.51 -12.61 2.57 -651.95 -1.68 -14.29 16 6 C 0.17 2.90 10.26 83.29 0.85 3.76 16 7 C -0.27 -5.93 9.89 22.22 0.22 -5.71 16 8 C 0.31 9.59 6.67 38.91 0.26 9.85 16 9 N -0.70 -21.79 4.66 -318.47 -1.48 -23.28 16 10 C 0.14 4.92 2.27 44.99 0.10 5.02 16 11 H 0.05 2.17 6.51 -2.38 -0.02 2.16 16 12 C -0.15 -4.21 9.42 71.98 0.68 -3.54 16 13 C -0.10 -4.02 4.69 30.59 0.14 -3.87 16 14 C 0.03 1.55 4.86 29.85 0.15 1.70 16 15 C -0.54 -30.19 9.11 25.60 0.23 -29.95 16 16 H 0.06 3.30 7.74 -2.92 -0.02 3.28 16 17 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 18 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 19 Si 0.96 43.98 29.54 68.60 2.03 46.01 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 C -0.41 -15.46 8.79 22.73 0.20 -15.26 16 24 C 0.53 19.68 6.99 84.65 0.59 20.27 16 25 O -0.61 -27.88 15.77 3.02 0.05 -27.84 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 29 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.83 7.37 -2.39 -0.02 1.81 16 32 H 0.15 0.98 8.00 -2.38 -0.02 0.96 16 33 H 0.22 0.86 8.03 -2.91 -0.02 0.84 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.41 11.46 8.62 -92.71 -0.80 10.66 16 36 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 37 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 41 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 42 H 0.00 0.09 7.75 -2.39 -0.02 0.07 16 43 H 0.26 15.03 8.31 -92.71 -0.77 14.25 16 44 H 0.11 4.61 6.17 -2.91 -0.02 4.59 16 Total: -1.00 -84.63 363.70 4.15 -80.48 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.18 Total: 20.09 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 6.09 Total: -12.45 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -2.88 Total: -94.19 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -1.27 Total: -39.94 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -84.63 4.15 -80.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486912.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.853 kcal (2) G-P(sol) polarization free energy of solvation -84.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds