Wall clock time and date at job start Tue Mar 31 2020 07:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35668 * 117.00083 * 2 1 4 4 C 1.38798 * 119.65150 * 180.02562 * 3 2 1 5 5 C 1.38537 * 119.23470 * 179.97438 * 4 3 2 6 6 C 1.38573 * 118.55082 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.38308 * 180.02562 * 6 5 4 8 8 N 1.46908 * 109.47418 * 260.00198 * 7 6 5 9 9 C 1.46893 * 111.00014 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47829 * 34.99848 * 9 8 7 11 11 C 1.53000 * 109.47024 * 274.99730 * 9 8 7 12 12 C 1.53002 * 109.47060 * 154.99978 * 9 8 7 13 13 C 1.52999 * 109.47419 * 295.00008 * 12 9 8 14 14 C 1.50694 * 109.47240 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99843 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00029 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46837 * 89.99688 * 18 16 14 20 20 H 1.48490 * 109.47013 * 209.99966 * 18 16 14 21 21 H 1.48503 * 109.46844 * 330.00052 * 18 16 14 22 22 C 1.38759 * 119.23675 * 359.97438 * 6 5 4 23 23 O 1.35673 * 119.64898 * 180.02562 * 22 6 5 24 24 C 1.42902 * 116.99979 * 179.97438 * 23 22 6 25 25 N 1.32324 * 119.64607 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47203 * 299.99525 * 1 2 3 28 28 H 1.08990 * 109.47450 * 60.00139 * 1 2 3 29 29 H 1.07995 * 120.37963 * 0.02626 * 4 3 2 30 30 H 1.08003 * 120.72352 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47049 * 19.99929 * 7 6 5 32 32 H 1.09002 * 109.47430 * 140.00417 * 7 6 5 33 33 H 1.00902 * 110.99872 * 303.95495 * 8 7 6 34 34 H 1.09004 * 109.47266 * 60.00311 * 11 9 8 35 35 H 1.09004 * 109.47580 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.47368 * 300.00400 * 11 9 8 37 37 H 1.09003 * 109.46770 * 55.00205 * 12 9 8 38 38 H 1.08999 * 109.47181 * 174.99362 * 12 9 8 39 39 H 1.09000 * 109.46598 * 299.99953 * 13 12 9 40 40 H 1.08996 * 109.46761 * 59.99439 * 13 12 9 41 41 H 0.96997 * 119.99940 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.47007 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.47120 * 299.99933 * 24 23 22 44 44 H 1.08998 * 109.46978 * 60.00666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4315 1.2730 -0.0005 5 6 4.0514 2.5119 -0.0011 6 6 3.2593 3.6489 -0.0005 7 6 3.8902 5.0174 -0.0016 8 7 3.8785 5.5632 1.3622 9 6 4.4877 6.8994 1.3997 10 1 4.2526 7.4321 0.4783 11 6 6.0055 6.7641 1.5375 12 6 3.9347 7.6787 2.5946 13 6 2.4373 7.9220 2.3960 14 6 1.8927 8.6901 3.5726 15 1 2.5489 8.9758 4.3815 16 6 0.5565 9.0273 3.6170 17 7 -0.2426 8.6790 2.6322 18 14 -0.1187 9.9788 5.0758 19 1 -0.0153 11.4357 4.8072 20 1 -1.5424 9.6144 5.2883 21 1 0.6651 9.6428 6.2915 22 6 1.8784 3.5128 0.0000 23 8 1.0948 4.6204 0.0001 24 6 -0.3193 4.4147 0.0001 25 7 1.3175 2.3141 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 4.0201 0.3676 -0.0014 30 1 5.1287 2.5899 -0.0011 31 1 4.9189 4.9429 -0.3543 32 1 3.3267 5.6768 -0.6617 33 1 2.9415 5.5821 1.7361 34 1 6.3996 6.2089 0.6862 35 1 6.4577 7.7555 1.5649 36 1 6.2407 6.2315 2.4589 37 1 4.0914 7.1037 3.5073 38 1 4.4508 8.6353 2.6749 39 1 2.2807 8.4970 1.4833 40 1 1.9212 6.9653 2.3158 41 1 -1.1825 8.9166 2.6633 42 1 -0.8268 5.3794 -0.0004 43 1 -0.6049 3.8539 -0.8899 44 1 -0.6049 3.8540 0.8901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:09 Heat of formation + Delta-G solvation = -51.803139 kcal Electronic energy + Delta-G solvation = -24062.716355 eV Core-core repulsion = 20594.576652 eV Total energy + Delta-G solvation = -3468.139703 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91196 -38.89273 -37.35962 -36.78154 -33.64658 -32.63402 -31.50235 -29.88344 -28.88445 -27.78396 -26.68530 -25.28559 -24.36467 -22.90242 -21.81365 -21.21969 -19.45264 -18.83507 -17.86543 -16.41461 -16.33091 -16.03209 -15.48460 -15.40954 -15.05089 -14.94881 -14.52077 -14.43311 -13.67474 -13.43899 -13.21927 -13.04093 -12.49181 -12.37454 -12.16731 -12.13948 -11.93210 -11.60132 -11.55638 -11.34468 -11.28361 -11.04476 -10.88057 -10.59915 -10.45858 -10.19444 -9.82818 -9.72826 -9.65925 -9.21997 -8.98568 -8.32277 -8.09705 -7.81356 -5.97522 -3.98899 1.23900 1.30947 2.97343 3.25771 3.32844 3.38988 3.42987 3.74364 4.27023 4.47974 4.77143 4.92683 5.02653 5.09678 5.18184 5.25201 5.37881 5.38888 5.46428 5.49697 5.53121 5.55980 5.68161 5.78611 5.88819 5.92423 5.99073 6.01297 6.23862 6.35524 6.39264 6.42698 6.56732 6.60586 6.89556 6.97383 7.15237 7.44020 7.58666 7.68470 7.77599 7.87253 7.98228 8.05609 8.46682 9.07837 9.64616 11.13443 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.004263 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.081371 B = 6566.953069 C = 8029.743001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.352 3.648 4 C -0.233 4.233 5 C 0.005 3.995 6 C -0.182 4.182 7 C 0.116 3.884 8 N -0.682 5.682 9 C 0.082 3.918 10 H 0.038 0.962 11 C -0.135 4.135 12 C -0.114 4.114 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.369 3.631 23 O -0.290 6.290 24 C 0.045 3.955 25 N -0.594 5.594 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.140 0.860 30 H 0.147 0.853 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.355 0.645 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.012 0.988 40 H 0.017 0.983 41 H 0.258 0.742 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 -15.064 -8.495 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.215 6.215 3 C 0.174 3.826 4 C -0.253 4.253 5 C -0.021 4.021 6 C -0.185 4.185 7 C -0.013 4.013 8 N -0.317 5.317 9 C -0.028 4.028 10 H 0.056 0.944 11 C -0.193 4.193 12 C -0.152 4.152 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C 0.190 3.810 23 O -0.196 6.196 24 C -0.051 4.051 25 N -0.333 5.333 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.177 0.823 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.030 0.970 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.122 0.878 43 H 0.070 0.930 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.705 -15.403 -8.356 18.144 hybrid contribution -0.982 1.030 0.390 1.476 sum 3.722 -14.373 -7.966 16.850 Atomic orbital electron populations 1.22829 0.77393 1.02727 1.02516 1.86233 1.22815 1.24626 1.87872 1.19377 0.89091 0.83340 0.90820 1.20826 0.91488 0.99462 1.13573 1.21082 1.00227 0.89718 0.91034 1.19733 0.90098 0.97593 1.11080 1.20563 0.99112 0.90167 0.91507 1.60721 1.27885 1.23963 1.19125 1.21602 0.93908 0.88363 0.98884 0.94401 1.21790 0.95678 1.00511 1.01358 1.21824 0.99548 0.97960 0.95884 1.19112 0.89021 0.96583 0.96854 1.21254 0.93866 1.35062 1.05405 0.92772 1.24999 0.97175 0.96114 0.96040 1.69967 1.04821 1.46879 1.31693 0.86638 0.78147 0.80249 0.83233 1.20749 1.21313 1.19900 1.19354 0.88545 0.83797 0.89299 1.86392 1.19779 1.26780 1.86605 1.22880 0.77189 1.03498 1.01491 1.66813 1.41513 0.98485 1.26530 0.88771 0.92242 0.92448 0.84186 0.83518 0.90739 0.94053 0.82346 0.93820 0.93104 0.92430 0.92601 0.92813 0.96979 0.96460 0.93203 0.87796 0.92990 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.31 -3.86 10.47 -18.71 -0.20 -4.05 16 3 C 0.35 4.88 7.48 -17.13 -0.13 4.75 16 4 C -0.23 -2.81 10.04 -39.26 -0.39 -3.21 16 5 C 0.00 0.06 9.80 -39.35 -0.39 -0.33 16 6 C -0.18 -2.68 5.42 -104.31 -0.57 -3.24 16 7 C 0.12 1.76 5.29 -4.97 -0.03 1.73 16 8 N -0.68 -11.95 6.30 -107.99 -0.68 -12.63 16 9 C 0.08 1.45 2.65 -67.71 -0.18 1.27 16 10 H 0.04 0.70 7.80 -51.93 -0.41 0.29 16 11 C -0.14 -1.98 9.41 37.16 0.35 -1.63 16 12 C -0.11 -2.40 4.74 -26.73 -0.13 -2.53 16 13 C 0.02 0.55 4.80 -27.89 -0.13 0.42 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.37 5.98 7.46 -17.14 -0.13 5.85 16 23 O -0.29 -5.07 9.67 -18.72 -0.18 -5.25 16 24 C 0.04 0.66 10.38 101.05 1.05 1.71 16 25 N -0.59 -9.05 8.06 -13.40 -0.11 -9.16 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.19 16 28 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.07 0.97 7.32 -51.93 -0.38 0.59 16 32 H 0.04 0.68 7.77 -51.93 -0.40 0.27 16 33 H 0.35 7.19 6.43 -39.29 -0.25 6.94 16 34 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.02 0.47 6.43 -51.93 -0.33 0.14 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 43 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -31.23 365.87 -7.16 -38.39 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.19 Total: 3.52 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -0.03 Total: -7.26 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.05 Total: -47.62 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.38 Total: -9.30 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.23 -7.16 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.415 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds