Wall clock time and date at job start Tue Mar 31 2020 07:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35668 * 117.00083 * 2 1 4 4 C 1.38798 * 119.65150 * 180.02562 * 3 2 1 5 5 C 1.38537 * 119.23470 * 179.97438 * 4 3 2 6 6 C 1.38573 * 118.55082 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.38308 * 180.02562 * 6 5 4 8 8 N 1.46908 * 109.47418 * 260.00198 * 7 6 5 9 9 C 1.46893 * 111.00014 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47829 * 34.99848 * 9 8 7 11 11 C 1.53000 * 109.47024 * 274.99730 * 9 8 7 12 12 C 1.53002 * 109.47060 * 154.99978 * 9 8 7 13 13 C 1.52999 * 109.47419 * 295.00008 * 12 9 8 14 14 C 1.50694 * 109.47240 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00257 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99843 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00029 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46837 * 89.99688 * 18 16 14 20 20 H 1.48490 * 109.47013 * 209.99966 * 18 16 14 21 21 H 1.48503 * 109.46844 * 330.00052 * 18 16 14 22 22 C 1.38759 * 119.23675 * 359.97438 * 6 5 4 23 23 O 1.35673 * 119.64898 * 180.02562 * 22 6 5 24 24 C 1.42902 * 116.99979 * 179.97438 * 23 22 6 25 25 N 1.32324 * 119.64607 * 0.02562 * 3 2 1 26 26 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47203 * 299.99525 * 1 2 3 28 28 H 1.08990 * 109.47450 * 60.00139 * 1 2 3 29 29 H 1.07995 * 120.37963 * 0.02626 * 4 3 2 30 30 H 1.08003 * 120.72352 * 179.97438 * 5 4 3 31 31 H 1.09003 * 109.47049 * 19.99929 * 7 6 5 32 32 H 1.09002 * 109.47430 * 140.00417 * 7 6 5 33 33 H 1.00902 * 110.99872 * 303.95495 * 8 7 6 34 34 H 1.09004 * 109.47266 * 60.00311 * 11 9 8 35 35 H 1.09004 * 109.47580 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.47368 * 300.00400 * 11 9 8 37 37 H 1.09003 * 109.46770 * 55.00205 * 12 9 8 38 38 H 1.08999 * 109.47181 * 174.99362 * 12 9 8 39 39 H 1.09000 * 109.46598 * 299.99953 * 13 12 9 40 40 H 1.08996 * 109.46761 * 59.99439 * 13 12 9 41 41 H 0.96997 * 119.99940 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.47007 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.47120 * 299.99933 * 24 23 22 44 44 H 1.08998 * 109.46978 * 60.00666 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4315 1.2730 -0.0005 5 6 4.0514 2.5119 -0.0011 6 6 3.2593 3.6489 -0.0005 7 6 3.8902 5.0174 -0.0016 8 7 3.8785 5.5632 1.3622 9 6 4.4877 6.8994 1.3997 10 1 4.2526 7.4321 0.4783 11 6 6.0055 6.7641 1.5375 12 6 3.9347 7.6787 2.5946 13 6 2.4373 7.9220 2.3960 14 6 1.8927 8.6901 3.5726 15 1 2.5489 8.9758 4.3815 16 6 0.5565 9.0273 3.6170 17 7 -0.2426 8.6790 2.6322 18 14 -0.1187 9.9788 5.0758 19 1 -0.0153 11.4357 4.8072 20 1 -1.5424 9.6144 5.2883 21 1 0.6651 9.6428 6.2915 22 6 1.8784 3.5128 0.0000 23 8 1.0948 4.6204 0.0001 24 6 -0.3193 4.4147 0.0001 25 7 1.3175 2.3141 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 4.0201 0.3676 -0.0014 30 1 5.1287 2.5899 -0.0011 31 1 4.9189 4.9429 -0.3543 32 1 3.3267 5.6768 -0.6617 33 1 2.9415 5.5821 1.7361 34 1 6.3996 6.2089 0.6862 35 1 6.4577 7.7555 1.5649 36 1 6.2407 6.2315 2.4589 37 1 4.0914 7.1037 3.5073 38 1 4.4508 8.6353 2.6749 39 1 2.2807 8.4970 1.4833 40 1 1.9212 6.9653 2.3158 41 1 -1.1825 8.9166 2.6633 42 1 -0.8268 5.3794 -0.0004 43 1 -0.6049 3.8539 -0.8899 44 1 -0.6049 3.8540 0.8901 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:08 Heat of formation + Delta-G solvation = -74.696592 kcal Electronic energy + Delta-G solvation = -24063.709089 eV Core-core repulsion = 20594.576652 eV Total energy + Delta-G solvation = -3469.132437 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98414 -39.95751 -38.68744 -37.99954 -35.41718 -34.20219 -32.72222 -31.46964 -30.22049 -28.80622 -27.77938 -27.03621 -25.71037 -23.94958 -23.30553 -22.69705 -21.01576 -19.88412 -18.95700 -18.51669 -17.41792 -17.14543 -16.72066 -16.60839 -16.53364 -16.38108 -15.98793 -15.74131 -14.76557 -14.57455 -14.38010 -14.37653 -14.36212 -13.99415 -13.36787 -13.32820 -13.03594 -13.01030 -12.89381 -12.83530 -12.65800 -12.54751 -12.34373 -12.29363 -11.82171 -11.61987 -11.56525 -11.28654 -10.93443 -10.88609 -10.74524 -10.53001 -9.35343 -9.04453 -8.18043 -6.28612 0.15943 0.28849 1.38715 1.39750 1.50796 2.01028 2.17218 2.40936 2.66178 3.14258 3.22105 3.48300 3.88355 3.90344 4.14199 4.23398 4.29786 4.32172 4.33086 4.38368 4.42562 4.44682 4.53521 4.64080 4.66572 4.72164 4.78698 4.82592 4.92351 5.04932 5.10507 5.13726 5.26521 5.30219 5.42168 5.49790 5.57365 5.73303 5.85715 5.86869 6.25145 6.28062 6.36243 6.42195 6.70038 6.87577 7.39797 8.92960 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014355 B = 0.004263 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.081371 B = 6566.953069 C = 8029.743001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C 0.335 3.665 4 C -0.223 4.223 5 C 0.016 3.984 6 C -0.196 4.196 7 C 0.121 3.879 8 N -0.681 5.681 9 C 0.085 3.915 10 H 0.027 0.973 11 C -0.125 4.125 12 C -0.103 4.103 13 C 0.031 3.969 14 C -0.544 4.544 15 H 0.057 0.943 16 C 0.003 3.997 17 N -0.927 5.927 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.343 3.657 23 O -0.319 6.319 24 C 0.048 3.952 25 N -0.606 5.606 26 H 0.127 0.873 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.171 0.829 30 H 0.184 0.816 31 H 0.105 0.895 32 H 0.020 0.980 33 H 0.334 0.666 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.058 0.942 39 H -0.019 1.019 40 H -0.005 1.005 41 H 0.262 0.738 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.921 -16.209 -8.091 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.219 6.219 3 C 0.157 3.843 4 C -0.243 4.243 5 C -0.009 4.009 6 C -0.200 4.200 7 C -0.008 4.008 8 N -0.313 5.313 9 C -0.024 4.024 10 H 0.045 0.955 11 C -0.183 4.183 12 C -0.140 4.140 13 C -0.006 4.006 14 C -0.582 4.582 15 H 0.075 0.925 16 C -0.195 4.195 17 N -0.567 5.567 18 Si 0.785 3.215 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.189 1.189 22 C 0.165 3.835 23 O -0.226 6.226 24 C -0.047 4.047 25 N -0.346 5.346 26 H 0.145 0.855 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.189 0.811 30 H 0.201 0.799 31 H 0.123 0.877 32 H 0.038 0.962 33 H 0.153 0.847 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.000 1.000 40 H 0.013 0.987 41 H 0.070 0.930 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.571 -16.561 -7.961 19.515 hybrid contribution -1.590 1.296 0.224 2.064 sum 4.981 -15.265 -7.737 17.824 Atomic orbital electron populations 1.23019 0.76186 1.04688 1.01833 1.86237 1.24047 1.23867 1.87714 1.19825 0.90127 0.83340 0.91016 1.21237 0.90916 1.00675 1.11491 1.21490 1.01719 0.88574 0.89130 1.19877 0.89749 0.98236 1.12097 1.20593 1.00474 0.90026 0.89720 1.60858 1.26298 1.23557 1.20582 1.21575 0.96196 0.88062 0.96612 0.95474 1.21700 0.92530 1.01662 1.02421 1.21655 0.96190 0.98793 0.97401 1.18947 0.92313 0.94562 0.94776 1.21684 0.94554 1.35691 1.06250 0.92498 1.25914 0.97519 0.97020 0.99012 1.70102 1.05204 1.47760 1.33629 0.85520 0.77459 0.78885 0.79624 1.19799 1.20767 1.18947 1.19606 0.89142 0.83758 0.91012 1.86343 1.20650 1.28298 1.87269 1.22853 0.76629 1.03207 1.01990 1.66734 1.42243 0.98658 1.26936 0.85490 0.93320 0.92751 0.81126 0.79889 0.87722 0.96192 0.84716 0.91507 0.92015 0.92319 0.92916 0.92334 1.00018 0.98696 0.92951 0.88512 0.91355 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 10.38 113.37 1.18 1.88 16 2 O -0.31 -7.37 10.47 -89.85 -0.94 -8.31 16 3 C 0.33 8.94 7.48 84.75 0.63 9.58 16 4 C -0.22 -4.80 10.04 22.48 0.23 -4.57 16 5 C 0.02 0.34 9.80 22.42 0.22 0.56 16 6 C -0.20 -5.66 5.42 -19.66 -0.11 -5.76 16 7 C 0.12 3.60 5.29 85.55 0.45 4.05 16 8 N -0.68 -23.87 6.30 -495.57 -3.12 -26.99 16 9 C 0.09 2.98 2.65 44.92 0.12 3.10 16 10 H 0.03 1.01 7.80 -2.39 -0.02 0.99 16 11 C -0.13 -3.34 9.41 71.98 0.68 -2.66 16 12 C -0.10 -4.36 4.74 30.59 0.15 -4.22 16 13 C 0.03 1.68 4.80 29.85 0.14 1.83 16 14 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 15 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.20 5.46 84.66 0.46 0.66 16 17 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 18 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 C 0.34 11.42 7.46 84.74 0.63 12.06 16 23 O -0.32 -11.91 9.67 -89.90 -0.87 -12.78 16 24 C 0.05 1.53 10.38 113.37 1.18 2.71 16 25 N -0.61 -18.70 8.06 -421.97 -3.40 -22.10 16 26 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 28 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 29 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.10 2.43 7.32 -2.39 -0.02 2.42 16 32 H 0.02 0.68 7.77 -2.39 -0.02 0.66 16 33 H 0.33 14.17 6.43 -89.69 -0.58 13.59 16 34 H 0.07 1.49 7.45 -2.38 -0.02 1.47 16 35 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 39 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 40 H -0.01 -0.30 6.43 -2.39 -0.02 -0.32 16 41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 43 H 0.07 1.87 8.10 -2.39 -0.02 1.85 16 44 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 Total: -1.00 -69.48 365.87 0.57 -68.91 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.40 Total: 22.89 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 6.19 Total: -12.24 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -6.24 Total: -105.48 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -1.81 Total: -21.09 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -69.48 0.57 -68.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.786 kcal (2) G-P(sol) polarization free energy of solvation -69.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds