Wall clock time and date at job start Tue Mar 31 2020 07:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99974 * 2 1 4 4 C 1.52998 * 109.46985 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47130 * 64.99884 * 4 3 2 6 6 C 1.36058 * 119.61354 * 90.00225 * 5 4 3 7 7 C 1.35873 * 120.58684 * 180.02562 * 6 5 4 8 8 N 1.40308 * 120.08826 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99925 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47018 * 35.00709 * 9 8 7 11 11 C 1.52996 * 109.47340 * 275.00151 * 9 8 7 12 12 C 1.53006 * 109.47007 * 155.00112 * 9 8 7 13 13 C 1.52997 * 109.47127 * 295.00479 * 12 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46672 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46691 * 119.99941 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00323 * 18 16 14 22 22 C 1.40613 * 119.82552 * 0.27005 * 7 6 5 23 23 C 1.36381 * 119.25533 * 359.44794 * 22 7 6 24 24 C 1.34634 * 119.62145 * 270.02113 * 5 4 3 25 25 O 1.22118 * 119.91855 * 359.95345 * 24 5 4 26 26 H 1.08998 * 109.47479 * 60.00004 * 1 2 3 27 27 H 1.09007 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47241 * 299.99772 * 1 2 3 29 29 H 1.09000 * 109.46799 * 60.00227 * 3 2 1 30 30 H 1.08995 * 109.46892 * 300.00184 * 3 2 1 31 31 H 1.09001 * 109.47393 * 304.99634 * 4 3 2 32 32 H 1.09003 * 109.46946 * 185.00435 * 4 3 2 33 33 H 1.07997 * 119.70724 * 359.97438 * 6 5 4 34 34 H 0.97001 * 119.99782 * 0.02562 * 8 7 6 35 35 H 1.08997 * 109.47474 * 300.00057 * 11 9 8 36 36 H 1.09002 * 109.46922 * 60.00654 * 11 9 8 37 37 H 1.09006 * 109.46822 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.47002 * 55.00053 * 12 9 8 39 39 H 1.08993 * 109.46955 * 175.00490 * 12 9 8 40 40 H 1.09001 * 109.47289 * 299.99953 * 13 12 9 41 41 H 1.09004 * 109.47261 * 59.99697 * 13 12 9 42 42 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 43 43 H 1.08006 * 120.37713 * 179.73010 * 22 7 6 44 44 H 1.07997 * 120.29923 * 180.27048 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2621 1.3485 -2.3270 7 6 4.6714 0.7941 -3.4980 8 7 4.9636 1.6126 -4.5996 9 6 5.4054 1.0128 -5.8610 10 1 4.8983 0.0590 -6.0071 11 6 6.9176 0.7849 -5.8154 12 6 5.0661 1.9533 -7.0193 13 6 3.5466 2.0828 -7.1427 14 6 3.2125 3.0096 -8.2831 15 1 4.0046 3.4608 -8.8621 16 6 1.8954 3.2807 -8.5879 17 7 0.9307 2.7309 -7.8830 18 14 1.4812 4.4290 -10.0019 19 1 2.7366 4.9117 -10.6314 20 1 0.6707 3.7000 -11.0103 21 1 0.7071 5.5875 -9.4882 22 6 4.7955 -0.6024 -3.6050 23 6 4.5122 -1.3816 -2.5221 24 6 4.0915 -0.7749 -1.3271 25 8 3.8308 -1.4639 -0.3531 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8463 -0.8899 31 1 3.8514 0.5682 0.8410 32 1 3.9785 2.1765 0.0890 33 1 4.1625 2.4210 -2.2486 34 1 4.8738 2.5756 -4.5256 35 1 7.4246 1.7386 -5.6694 36 1 7.1592 0.1148 -4.9903 37 1 7.2461 0.3382 -6.7539 38 1 5.5001 2.9350 -6.8292 39 1 5.4729 1.5494 -7.9463 40 1 3.1125 1.1012 -7.3327 41 1 3.1398 2.4867 -6.2156 42 1 0.0042 2.9219 -8.0972 43 1 5.1160 -1.0528 -4.5329 44 1 4.6060 -2.4557 -2.5842 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:53 Heat of formation + Delta-G solvation = -51.949088 kcal Electronic energy + Delta-G solvation = -23825.923349 eV Core-core repulsion = 20357.777318 eV Total energy + Delta-G solvation = -3468.146032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.01677 -38.06343 -37.60480 -35.98938 -34.46238 -33.03420 -31.49634 -30.17990 -29.36080 -27.30037 -26.41712 -25.14877 -24.39662 -23.01157 -22.13765 -21.15847 -19.88625 -17.74676 -17.35909 -16.45596 -16.32775 -16.19069 -16.03535 -15.65285 -14.97190 -14.75587 -14.54279 -14.31934 -13.90326 -13.31335 -13.04871 -13.02825 -12.82381 -12.54739 -12.46071 -12.27272 -11.99398 -11.90301 -11.61042 -11.44161 -11.26645 -11.20766 -10.98623 -10.55564 -10.44622 -10.01290 -9.88725 -9.74503 -9.49568 -9.42720 -9.10987 -8.84951 -8.39325 -6.66263 -6.04240 -4.07134 1.03382 2.38815 2.84666 3.26679 3.34832 3.38118 3.67075 3.90581 3.98734 4.41433 4.80691 4.85412 4.91121 5.03314 5.07835 5.18051 5.25300 5.30079 5.31735 5.32873 5.38561 5.39173 5.56669 5.65890 5.68005 5.69479 5.92973 6.03352 6.12721 6.20780 6.29077 6.31433 6.45777 6.69138 6.71782 7.02666 7.10380 7.40048 7.64100 7.67531 7.79857 7.96215 8.12960 8.37596 8.45831 9.00937 9.57432 11.06561 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003829 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.185322 B = 7310.153803 C = 8685.203996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.043 3.957 4 C 0.102 3.898 5 N -0.475 5.475 6 C 0.000 4.000 7 C 0.129 3.871 8 N -0.731 5.731 9 C 0.150 3.850 10 H 0.070 0.930 11 C -0.166 4.166 12 C -0.118 4.118 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.049 4.049 23 C -0.213 4.213 24 C 0.506 3.494 25 O -0.558 6.558 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.400 0.600 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.013 0.987 41 H 0.020 0.980 42 H 0.259 0.741 43 H 0.135 0.865 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -2.147 13.734 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.035 4.035 4 C -0.020 4.020 5 N -0.190 5.190 6 C -0.130 4.130 7 C 0.024 3.976 8 N -0.365 5.365 9 C 0.045 3.955 10 H 0.088 0.912 11 C -0.225 4.225 12 C -0.156 4.156 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.073 4.073 23 C -0.236 4.236 24 C 0.306 3.694 25 O -0.441 6.441 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.168 0.832 34 H 0.235 0.765 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.153 0.847 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.424 -2.880 14.221 15.868 hybrid contribution -0.736 1.408 -1.018 1.887 sum 5.688 -1.472 13.203 14.452 Atomic orbital electron populations 1.22739 0.81397 1.02788 0.99661 1.88119 1.19188 1.26208 1.95265 1.22925 0.93448 0.86198 1.00899 1.21846 0.93391 0.99513 0.87274 1.44794 1.55340 1.07533 1.11327 1.20688 1.08677 0.96505 0.87180 1.16903 1.01965 0.90443 0.88302 1.44503 1.75731 1.07374 1.08904 1.21030 0.92650 0.97801 0.84032 0.91171 1.22331 0.97354 1.01569 1.01253 1.21927 1.01234 0.97347 0.95066 1.19071 0.88310 0.96907 0.96979 1.21311 0.91779 1.27637 1.15393 0.92755 1.25018 0.96622 0.96179 0.96532 1.69979 0.99459 1.43908 1.39925 0.86588 0.78412 0.80787 0.82520 1.19755 1.21022 1.21069 1.21348 0.94883 0.92076 0.98980 1.22046 1.07397 1.01194 0.92929 1.16887 0.81379 0.80788 0.90301 1.90937 1.53917 1.60682 1.38573 0.94055 0.89682 0.94396 0.92088 0.92632 0.87816 0.88115 0.83187 0.76536 0.92664 0.93223 0.92174 0.92913 0.92006 0.96858 0.96191 0.93096 0.84732 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.37 -5.36 9.44 -43.95 -0.42 -5.78 16 3 C 0.04 0.48 6.28 37.16 0.23 0.71 16 4 C 0.10 1.11 5.80 -4.05 -0.02 1.08 16 5 N -0.48 -6.47 2.58 -119.56 -0.31 -6.78 16 6 C 0.00 0.00 10.13 -16.52 -0.17 -0.17 16 7 C 0.13 1.79 6.60 -83.93 -0.55 1.23 16 8 N -0.73 -10.35 4.72 -52.31 -0.25 -10.60 16 9 C 0.15 2.22 2.28 -67.93 -0.16 2.06 16 10 H 0.07 1.08 6.50 -51.93 -0.34 0.75 16 11 C -0.17 -2.02 9.47 37.16 0.35 -1.67 16 12 C -0.12 -2.14 4.69 -26.73 -0.13 -2.27 16 13 C 0.02 0.59 4.86 -27.89 -0.14 0.45 16 14 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 15 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C -0.05 -0.67 8.92 -39.36 -0.35 -1.02 16 23 C -0.21 -3.10 9.98 -39.41 -0.39 -3.50 16 24 C 0.51 8.27 7.02 -15.48 -0.11 8.16 16 25 O -0.56 -10.81 15.81 -3.91 -0.06 -10.87 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.23 7.38 -51.93 -0.38 0.85 16 32 H 0.10 0.72 8.02 -51.93 -0.42 0.30 16 33 H 0.15 1.52 8.04 -52.49 -0.42 1.10 16 34 H 0.40 5.49 8.61 -40.82 -0.35 5.14 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.57 7.83 -51.93 -0.41 0.16 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.02 0.51 7.75 -51.93 -0.40 0.10 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.13 1.66 6.31 -52.48 -0.33 1.32 16 44 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -33.75 364.29 -7.80 -41.55 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.24 Total: 2.91 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.73 Total: -6.45 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.18 Total: -42.96 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.48 Total: -16.65 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.75 -7.80 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.400 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds