Wall clock time and date at job start Tue Mar 31 2020 07:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99974 * 2 1 4 4 C 1.52998 * 109.46985 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47130 * 64.99884 * 4 3 2 6 6 C 1.36058 * 119.61354 * 90.00225 * 5 4 3 7 7 C 1.35873 * 120.58684 * 180.02562 * 6 5 4 8 8 N 1.40308 * 120.08826 * 179.97438 * 7 6 5 9 9 C 1.46497 * 119.99925 * 179.97438 * 8 7 6 10 10 H 1.09007 * 109.47018 * 35.00709 * 9 8 7 11 11 C 1.52996 * 109.47340 * 275.00151 * 9 8 7 12 12 C 1.53006 * 109.47007 * 155.00112 * 9 8 7 13 13 C 1.52997 * 109.47127 * 295.00479 * 12 9 8 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 9 15 15 H 1.08000 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37887 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46672 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46691 * 119.99941 * 18 16 14 21 21 H 1.48497 * 109.47025 * 240.00323 * 18 16 14 22 22 C 1.40613 * 119.82552 * 0.27005 * 7 6 5 23 23 C 1.36381 * 119.25533 * 359.44794 * 22 7 6 24 24 C 1.34634 * 119.62145 * 270.02113 * 5 4 3 25 25 O 1.22118 * 119.91855 * 359.95345 * 24 5 4 26 26 H 1.08998 * 109.47479 * 60.00004 * 1 2 3 27 27 H 1.09007 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47241 * 299.99772 * 1 2 3 29 29 H 1.09000 * 109.46799 * 60.00227 * 3 2 1 30 30 H 1.08995 * 109.46892 * 300.00184 * 3 2 1 31 31 H 1.09001 * 109.47393 * 304.99634 * 4 3 2 32 32 H 1.09003 * 109.46946 * 185.00435 * 4 3 2 33 33 H 1.07997 * 119.70724 * 359.97438 * 6 5 4 34 34 H 0.97001 * 119.99782 * 0.02562 * 8 7 6 35 35 H 1.08997 * 109.47474 * 300.00057 * 11 9 8 36 36 H 1.09002 * 109.46922 * 60.00654 * 11 9 8 37 37 H 1.09006 * 109.46822 * 179.97438 * 11 9 8 38 38 H 1.09001 * 109.47002 * 55.00053 * 12 9 8 39 39 H 1.08993 * 109.46955 * 175.00490 * 12 9 8 40 40 H 1.09001 * 109.47289 * 299.99953 * 13 12 9 41 41 H 1.09004 * 109.47261 * 59.99697 * 13 12 9 42 42 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 43 43 H 1.08006 * 120.37713 * 179.73010 * 22 7 6 44 44 H 1.07997 * 120.29923 * 180.27048 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.2621 1.3485 -2.3270 7 6 4.6714 0.7941 -3.4980 8 7 4.9636 1.6126 -4.5996 9 6 5.4054 1.0128 -5.8610 10 1 4.8983 0.0590 -6.0071 11 6 6.9176 0.7849 -5.8154 12 6 5.0661 1.9533 -7.0193 13 6 3.5466 2.0828 -7.1427 14 6 3.2125 3.0096 -8.2831 15 1 4.0046 3.4608 -8.8621 16 6 1.8954 3.2807 -8.5879 17 7 0.9307 2.7309 -7.8830 18 14 1.4812 4.4290 -10.0019 19 1 2.7366 4.9117 -10.6314 20 1 0.6707 3.7000 -11.0103 21 1 0.7071 5.5875 -9.4882 22 6 4.7955 -0.6024 -3.6050 23 6 4.5122 -1.3816 -2.5221 24 6 4.0915 -0.7749 -1.3271 25 8 3.8308 -1.4639 -0.3531 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6885 1.8463 -0.8899 31 1 3.8514 0.5682 0.8410 32 1 3.9785 2.1765 0.0890 33 1 4.1625 2.4210 -2.2486 34 1 4.8738 2.5756 -4.5256 35 1 7.4246 1.7386 -5.6694 36 1 7.1592 0.1148 -4.9903 37 1 7.2461 0.3382 -6.7539 38 1 5.5001 2.9350 -6.8292 39 1 5.4729 1.5494 -7.9463 40 1 3.1125 1.1012 -7.3327 41 1 3.1398 2.4867 -6.2156 42 1 0.0042 2.9219 -8.0972 43 1 5.1160 -1.0528 -4.5329 44 1 4.6060 -2.4557 -2.5842 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:53 Heat of formation + Delta-G solvation = -73.096173 kcal Electronic energy + Delta-G solvation = -23826.840356 eV Core-core repulsion = 20357.777318 eV Total energy + Delta-G solvation = -3469.063038 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.13357 -39.16055 -38.68349 -37.25798 -35.75904 -34.79510 -32.87025 -31.28600 -30.77039 -28.39089 -27.34154 -26.93351 -25.44046 -24.08485 -23.47014 -22.59824 -21.17089 -18.87681 -18.54033 -18.24993 -17.45553 -17.27941 -17.12131 -16.69690 -16.49846 -16.01410 -15.92438 -15.38151 -14.97672 -14.71789 -14.49101 -14.24691 -14.04991 -13.84998 -13.60616 -13.41930 -13.09999 -12.98549 -12.87810 -12.86210 -12.77975 -12.52735 -12.28852 -12.13293 -11.88085 -11.56990 -11.30618 -11.06350 -10.94230 -10.79995 -10.60231 -10.52222 -10.04130 -8.16901 -7.78050 -6.26920 -0.05284 1.21928 1.39957 1.41696 1.53466 1.80650 2.42486 2.76106 2.79387 2.93481 3.17147 3.81491 3.93446 4.01087 4.02595 4.10811 4.15417 4.30572 4.37467 4.41657 4.43248 4.46994 4.51168 4.53016 4.76858 4.79530 4.82610 4.86483 5.04547 5.07313 5.14021 5.17115 5.20174 5.33032 5.49409 5.58690 5.63835 5.82432 5.93669 6.20966 6.28767 6.30006 6.56749 6.92476 7.03760 7.28077 7.42601 8.94267 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.003829 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.185322 B = 7310.153803 C = 8685.203996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.039 3.961 4 C 0.095 3.905 5 N -0.471 5.471 6 C 0.016 3.984 7 C 0.111 3.889 8 N -0.733 5.733 9 C 0.157 3.843 10 H 0.061 0.939 11 C -0.155 4.155 12 C -0.105 4.105 13 C 0.031 3.969 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.933 5.933 18 Si 0.957 3.043 19 H -0.261 1.261 20 H -0.283 1.283 21 H -0.280 1.280 22 C -0.043 4.043 23 C -0.232 4.232 24 C 0.490 3.510 25 O -0.601 6.601 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.183 0.817 34 H 0.402 0.598 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.065 0.935 40 H -0.020 1.020 41 H 0.001 0.999 42 H 0.260 0.740 43 H 0.147 0.853 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.692 -0.272 13.433 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.038 4.038 4 C -0.026 4.026 5 N -0.183 5.183 6 C -0.115 4.115 7 C 0.007 3.993 8 N -0.368 5.368 9 C 0.051 3.949 10 H 0.079 0.921 11 C -0.214 4.214 12 C -0.143 4.143 13 C -0.006 4.006 14 C -0.577 4.577 15 H 0.078 0.922 16 C -0.196 4.196 17 N -0.574 5.574 18 Si 0.782 3.218 19 H -0.185 1.185 20 H -0.209 1.209 21 H -0.206 1.206 22 C -0.067 4.067 23 C -0.254 4.254 24 C 0.292 3.708 25 O -0.488 6.488 26 H 0.057 0.943 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.163 0.837 33 H 0.200 0.800 34 H 0.237 0.763 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.083 0.917 40 H -0.001 1.001 41 H 0.020 0.980 42 H 0.069 0.931 43 H 0.164 0.836 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 7.517 -0.978 13.923 15.852 hybrid contribution -1.105 0.887 -0.914 1.686 sum 6.411 -0.091 13.008 14.503 Atomic orbital electron populations 1.22835 0.80268 1.03106 1.00620 1.88082 1.20713 1.28393 1.95523 1.23113 0.93273 0.85225 1.02222 1.22198 0.93685 1.01203 0.85482 1.44935 1.53812 1.07058 1.12477 1.21164 1.06208 0.97796 0.86349 1.17048 1.02949 0.90563 0.88779 1.44412 1.76222 1.07459 1.08682 1.20872 0.94614 0.96290 0.83094 0.92135 1.22206 0.94752 1.02230 1.02219 1.21728 0.96736 0.98857 0.96930 1.18941 0.92287 0.94262 0.95152 1.21810 0.92083 1.27754 1.16078 0.92215 1.25903 0.96683 0.97847 0.99191 1.70112 0.99826 1.45603 1.41842 0.85516 0.78467 0.78604 0.79168 1.18452 1.20895 1.20610 1.21464 0.94078 0.92166 0.99039 1.22080 1.08716 1.01783 0.92868 1.17179 0.81617 0.81679 0.90320 1.90901 1.56280 1.61737 1.39907 0.94325 0.89862 0.92081 0.89011 0.92863 0.89108 0.83687 0.80037 0.76257 0.92044 0.92286 0.91194 0.92063 0.91658 1.00144 0.98050 0.93090 0.83564 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -11.82 9.44 -140.65 -1.33 -13.15 16 3 C 0.04 0.80 6.28 71.98 0.45 1.25 16 4 C 0.10 1.91 5.80 86.38 0.50 2.41 16 5 N -0.47 -12.33 2.58 -650.29 -1.68 -14.00 16 6 C 0.02 0.36 10.13 83.49 0.85 1.21 16 7 C 0.11 2.92 6.60 37.81 0.25 3.17 16 8 N -0.73 -19.60 4.72 -319.42 -1.51 -21.10 16 9 C 0.16 4.40 2.28 44.99 0.10 4.50 16 10 H 0.06 1.82 6.50 -2.38 -0.02 1.81 16 11 C -0.16 -3.36 9.47 71.98 0.68 -2.68 16 12 C -0.10 -3.67 4.69 30.60 0.14 -3.53 16 13 C 0.03 1.49 4.86 29.85 0.15 1.64 16 14 C -0.54 -29.12 9.11 25.60 0.23 -28.89 16 15 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 16 C 0.00 0.07 5.46 84.66 0.46 0.53 16 17 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 18 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 C -0.04 -1.16 8.92 22.42 0.20 -0.96 16 23 C -0.23 -6.85 9.98 22.38 0.22 -6.63 16 24 C 0.49 16.23 7.02 84.81 0.60 16.82 16 25 O -0.60 -24.09 15.81 2.63 0.04 -24.05 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 2.11 7.38 -2.39 -0.02 2.09 16 32 H 0.15 1.54 8.02 -2.39 -0.02 1.53 16 33 H 0.18 3.05 8.04 -2.91 -0.02 3.03 16 34 H 0.40 10.30 8.61 -92.71 -0.80 9.51 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.06 1.19 7.83 -2.39 -0.02 1.17 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 41 H 0.00 0.06 7.75 -2.38 -0.02 0.04 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.15 3.49 6.31 -2.91 -0.02 3.47 16 44 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -74.38 364.29 4.11 -70.28 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.18 Total: 21.60 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 6.08 Total: -9.28 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -2.90 Total: -90.44 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.29 Total: -37.20 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -74.38 4.11 -70.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.819 kcal (2) G-P(sol) polarization free energy of solvation -74.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds