Wall clock time and date at job start Tue Mar 31 2020 07:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 114.00037 * 2 1 4 4 C 1.52989 * 109.47417 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47117 * 65.00082 * 4 3 2 6 6 C 1.36023 * 119.61635 * 90.00376 * 5 4 3 7 7 C 1.35209 * 120.82480 * 180.02562 * 6 5 4 8 8 C 1.40263 * 120.03869 * 359.94992 * 7 6 5 9 9 C 1.36770 * 119.24180 * 0.02580 * 8 7 6 10 10 N 1.40046 * 120.40419 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99487 * 359.97438 * 10 9 8 12 12 H 1.09000 * 109.47212 * 34.99993 * 11 10 9 13 13 C 1.53005 * 109.46831 * 274.99825 * 11 10 9 14 14 C 1.53002 * 109.47035 * 155.00228 * 11 10 9 15 15 C 1.53004 * 109.46746 * 294.99923 * 14 11 10 16 16 C 1.50702 * 109.46764 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99956 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99647 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99608 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00339 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46996 * 90.00380 * 20 18 16 22 22 H 1.48500 * 109.47450 * 210.00259 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00827 * 20 18 16 24 24 C 1.34669 * 119.62306 * 270.26537 * 5 4 3 25 25 O 1.22079 * 120.02799 * 359.97438 * 24 5 4 26 26 H 1.09003 * 109.46692 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46896 * 299.99540 * 1 2 3 28 28 H 1.08997 * 109.46940 * 60.00112 * 1 2 3 29 29 H 1.09001 * 109.46974 * 59.99895 * 3 2 1 30 30 H 1.09001 * 109.47359 * 300.00622 * 3 2 1 31 31 H 1.08998 * 109.47305 * 305.00398 * 4 3 2 32 32 H 1.09000 * 109.47526 * 185.00083 * 4 3 2 33 33 H 1.08003 * 119.58995 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.98636 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.37905 * 180.02562 * 8 7 6 36 36 H 0.96995 * 120.00699 * 180.02562 * 10 9 8 37 37 H 1.08992 * 109.47061 * 300.00078 * 13 11 10 38 38 H 1.09001 * 109.46812 * 60.00445 * 13 11 10 39 39 H 1.09002 * 109.46935 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.47000 * 54.99213 * 14 11 10 41 41 H 1.09000 * 109.47089 * 174.99822 * 14 11 10 42 42 H 1.08994 * 109.47010 * 299.99877 * 15 14 11 43 43 H 1.09000 * 109.47409 * 60.00095 * 15 14 11 44 44 H 0.96997 * 119.99875 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.2621 1.3484 -2.3269 7 6 4.6699 0.8019 -3.4944 8 6 4.8034 -0.5896 -3.6095 9 6 4.5164 -1.3798 -2.5307 10 7 4.6408 -2.7720 -2.6188 11 6 5.0801 -3.3902 -3.8723 12 1 5.8092 -2.7435 -4.3604 13 6 3.8747 -3.5865 -4.7940 14 6 5.7208 -4.7473 -3.5745 15 6 6.9969 -4.5402 -2.7562 16 6 7.6283 -5.8769 -2.4633 17 1 7.1654 -6.7835 -2.8244 18 6 8.7963 -5.9425 -1.7336 19 7 9.3470 -7.1091 -1.4777 20 14 9.5965 -4.3746 -1.1086 21 1 9.0646 -4.0510 0.2396 22 1 11.0667 -4.5675 -1.0275 23 1 9.2942 -3.2589 -2.0409 24 6 4.0870 -0.7754 -1.3288 25 8 3.8223 -1.4665 -0.3578 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8515 0.5683 0.8409 32 1 3.9785 2.1766 0.0889 33 1 4.1626 2.4208 -2.2461 34 1 4.8933 1.4371 -4.3388 35 1 5.1291 -1.0320 -4.5394 36 1 4.4354 -3.3269 -1.8503 37 1 3.1457 -4.2332 -4.3059 38 1 3.4184 -2.6197 -5.0062 39 1 4.2015 -4.0469 -5.7264 40 1 5.0218 -5.3625 -3.0079 41 1 5.9671 -5.2464 -4.5117 42 1 7.6959 -3.9250 -3.3226 43 1 6.7506 -4.0412 -1.8189 44 1 10.1689 -7.1553 -0.9646 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:48 Heat of formation + Delta-G solvation = -49.737404 kcal Electronic energy + Delta-G solvation = -24162.451541 eV Core-core repulsion = 20694.401415 eV Total energy + Delta-G solvation = -3468.050126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.17709 -38.18677 -37.34580 -36.62060 -34.47400 -32.90427 -31.48491 -29.83380 -29.69067 -28.02048 -26.59643 -25.29610 -24.36788 -22.73801 -22.22971 -20.96322 -19.87410 -17.93235 -17.40658 -16.71341 -16.50232 -16.31339 -16.22488 -15.77166 -15.18847 -14.73541 -14.53263 -14.23631 -14.13782 -13.35642 -13.04003 -12.99550 -12.83589 -12.65749 -12.41815 -12.25771 -12.18386 -11.86441 -11.63498 -11.55465 -11.41302 -11.36226 -10.94343 -10.81835 -10.32270 -9.99572 -9.93586 -9.74030 -9.65500 -9.50319 -9.12626 -8.74471 -8.47970 -6.69292 -5.99669 -3.97198 1.27540 2.15650 2.66379 3.36994 3.43364 3.48762 3.50236 3.85205 3.94871 4.51091 4.65340 4.69519 4.75337 4.87138 4.99502 5.00471 5.11106 5.13798 5.28392 5.35264 5.36184 5.44631 5.48975 5.53678 5.57995 5.66134 5.94976 6.03665 6.10022 6.24598 6.32079 6.40346 6.48066 6.65672 6.77952 6.91270 6.93512 7.21278 7.35736 7.44761 7.62898 7.84600 8.09984 8.27649 8.58175 9.05297 9.63745 11.13818 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.004033 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.360811 B = 6940.442309 C = 7265.315391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.045 3.955 4 C 0.099 3.901 5 N -0.488 5.488 6 C 0.033 3.967 7 C -0.155 4.155 8 C -0.183 4.183 9 C 0.128 3.872 10 N -0.707 5.707 11 C 0.144 3.856 12 H 0.076 0.924 13 C -0.165 4.165 14 C -0.110 4.110 15 C -0.012 4.012 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.266 1.266 24 C 0.514 3.486 25 O -0.532 6.532 26 H 0.086 0.914 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.408 0.592 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.100 22.406 -2.358 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.033 4.033 4 C -0.023 4.023 5 N -0.204 5.204 6 C -0.091 4.091 7 C -0.179 4.179 8 C -0.214 4.214 9 C 0.018 3.982 10 N -0.334 5.334 11 C 0.040 3.960 12 H 0.094 0.906 13 C -0.223 4.223 14 C -0.148 4.148 15 C -0.050 4.050 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.544 5.544 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.191 1.191 24 C 0.311 3.689 25 O -0.412 6.412 26 H 0.104 0.896 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.947 21.602 -1.775 26.910 hybrid contribution 0.260 0.903 0.567 1.098 sum -15.687 22.506 -1.208 27.460 Atomic orbital electron populations 1.22735 0.81414 1.02920 0.99423 1.88161 1.19164 1.26145 1.95215 1.22915 0.93514 0.86197 1.00653 1.21885 0.93268 0.99660 0.87456 1.44833 1.56502 1.07019 1.12039 1.21331 1.04094 0.96206 0.87455 1.20208 1.05871 0.94766 0.97016 1.20536 1.08938 0.93017 0.98895 1.18589 0.99719 0.86376 0.93528 1.44764 1.71825 1.01679 1.15150 1.21193 0.94899 0.95973 0.83981 0.90648 1.22260 0.98944 1.01511 0.99619 1.21776 0.98547 0.93227 1.01271 1.19560 0.92690 0.97621 0.95080 1.21162 1.08100 0.92554 1.33978 0.91070 1.25015 0.96924 0.95853 0.95613 1.69921 1.20194 1.23880 1.40403 0.86786 0.78276 0.84480 0.79812 1.20326 1.21465 1.19051 1.16661 0.81533 0.81442 0.89246 1.90980 1.51651 1.60573 1.38044 0.89572 0.94265 0.94424 0.91980 0.92996 0.87679 0.87885 0.83483 0.84790 0.85469 0.75569 0.92526 0.92913 0.91840 0.92221 0.91144 0.96797 0.96757 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.37 -4.75 9.42 -44.43 -0.42 -5.17 16 3 C 0.05 0.40 6.28 37.15 0.23 0.64 16 4 C 0.10 0.96 5.80 -4.05 -0.02 0.94 16 5 N -0.49 -6.16 2.58 -119.51 -0.31 -6.47 16 6 C 0.03 0.33 10.28 -16.77 -0.17 0.15 16 7 C -0.15 -1.67 10.00 -39.90 -0.40 -2.07 16 8 C -0.18 -2.53 8.92 -39.35 -0.35 -2.88 16 9 C 0.13 2.11 6.67 -83.50 -0.56 1.55 16 10 N -0.71 -12.41 4.70 -51.98 -0.24 -12.65 16 11 C 0.14 2.36 2.27 -67.92 -0.15 2.20 16 12 H 0.08 1.21 6.52 -51.93 -0.34 0.88 16 13 C -0.16 -2.23 9.45 37.16 0.35 -1.87 16 14 C -0.11 -2.17 4.69 -26.73 -0.13 -2.29 16 15 C -0.01 -0.30 3.93 -27.88 -0.11 -0.41 16 16 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -28.70 13.96 55.43 0.77 -27.92 16 20 Si 0.88 22.90 27.47 -169.99 -4.67 18.23 16 21 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.27 -6.71 6.54 56.52 0.37 -6.34 16 24 C 0.51 8.70 7.04 -15.17 -0.11 8.59 16 25 O -0.53 -10.72 15.14 -4.35 -0.07 -10.79 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 1.24 7.40 -51.93 -0.38 0.86 16 32 H 0.10 0.58 8.01 -51.93 -0.42 0.16 16 33 H 0.15 0.85 8.04 -52.48 -0.42 0.43 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.65 6.17 -52.48 -0.32 1.33 16 36 H 0.41 7.78 8.06 -40.82 -0.33 7.45 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.67 7.75 -51.93 -0.40 0.27 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 43 H 0.01 0.36 7.18 -51.93 -0.37 -0.01 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -36.10 359.46 -7.42 -43.52 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.18 Total: 3.51 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.73 Total: -7.68 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.22 Total: -47.04 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.48 Total: -15.96 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.67 Total: 18.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.10 -7.42 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.214 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds