Wall clock time and date at job start Tue Mar 31 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 114.00037 * 2 1 4 4 C 1.52989 * 109.47417 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47117 * 65.00082 * 4 3 2 6 6 C 1.36023 * 119.61635 * 90.00376 * 5 4 3 7 7 C 1.35209 * 120.82480 * 180.02562 * 6 5 4 8 8 C 1.40263 * 120.03869 * 359.94992 * 7 6 5 9 9 C 1.36770 * 119.24180 * 0.02580 * 8 7 6 10 10 N 1.40046 * 120.40419 * 179.97438 * 9 8 7 11 11 C 1.46506 * 119.99487 * 359.97438 * 10 9 8 12 12 H 1.09000 * 109.47212 * 34.99993 * 11 10 9 13 13 C 1.53005 * 109.46831 * 274.99825 * 11 10 9 14 14 C 1.53002 * 109.47035 * 155.00228 * 11 10 9 15 15 C 1.53004 * 109.46746 * 294.99923 * 14 11 10 16 16 C 1.50702 * 109.46764 * 180.02562 * 15 14 11 17 17 H 1.08002 * 119.99956 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99647 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99608 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00339 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46996 * 90.00380 * 20 18 16 22 22 H 1.48500 * 109.47450 * 210.00259 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00827 * 20 18 16 24 24 C 1.34669 * 119.62306 * 270.26537 * 5 4 3 25 25 O 1.22079 * 120.02799 * 359.97438 * 24 5 4 26 26 H 1.09003 * 109.46692 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46896 * 299.99540 * 1 2 3 28 28 H 1.08997 * 109.46940 * 60.00112 * 1 2 3 29 29 H 1.09001 * 109.46974 * 59.99895 * 3 2 1 30 30 H 1.09001 * 109.47359 * 300.00622 * 3 2 1 31 31 H 1.08998 * 109.47305 * 305.00398 * 4 3 2 32 32 H 1.09000 * 109.47526 * 185.00083 * 4 3 2 33 33 H 1.08003 * 119.58995 * 0.02562 * 6 5 4 34 34 H 1.07997 * 119.98636 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.37905 * 180.02562 * 8 7 6 36 36 H 0.96995 * 120.00699 * 180.02562 * 10 9 8 37 37 H 1.08992 * 109.47061 * 300.00078 * 13 11 10 38 38 H 1.09001 * 109.46812 * 60.00445 * 13 11 10 39 39 H 1.09002 * 109.46935 * 180.02562 * 13 11 10 40 40 H 1.08998 * 109.47000 * 54.99213 * 14 11 10 41 41 H 1.09000 * 109.47089 * 174.99822 * 14 11 10 42 42 H 1.08994 * 109.47010 * 299.99877 * 15 14 11 43 43 H 1.09000 * 109.47409 * 60.00095 * 15 14 11 44 44 H 0.96997 * 119.99875 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.2621 1.3484 -2.3269 7 6 4.6699 0.8019 -3.4944 8 6 4.8034 -0.5896 -3.6095 9 6 4.5164 -1.3798 -2.5307 10 7 4.6408 -2.7720 -2.6188 11 6 5.0801 -3.3902 -3.8723 12 1 5.8092 -2.7435 -4.3604 13 6 3.8747 -3.5865 -4.7940 14 6 5.7208 -4.7473 -3.5745 15 6 6.9969 -4.5402 -2.7562 16 6 7.6283 -5.8769 -2.4633 17 1 7.1654 -6.7835 -2.8244 18 6 8.7963 -5.9425 -1.7336 19 7 9.3470 -7.1091 -1.4777 20 14 9.5965 -4.3746 -1.1086 21 1 9.0646 -4.0510 0.2396 22 1 11.0667 -4.5675 -1.0275 23 1 9.2942 -3.2589 -2.0409 24 6 4.0870 -0.7754 -1.3288 25 8 3.8223 -1.4665 -0.3578 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8515 0.5683 0.8409 32 1 3.9785 2.1766 0.0889 33 1 4.1626 2.4208 -2.2461 34 1 4.8933 1.4371 -4.3388 35 1 5.1291 -1.0320 -4.5394 36 1 4.4354 -3.3269 -1.8503 37 1 3.1457 -4.2332 -4.3059 38 1 3.4184 -2.6197 -5.0062 39 1 4.2015 -4.0469 -5.7264 40 1 5.0218 -5.3625 -3.0079 41 1 5.9671 -5.2464 -4.5117 42 1 7.6959 -3.9250 -3.3226 43 1 6.7506 -4.0412 -1.8189 44 1 10.1689 -7.1553 -0.9646 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491818.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:47 Heat of formation + Delta-G solvation = -74.698444 kcal Electronic energy + Delta-G solvation = -24163.533933 eV Core-core repulsion = 20694.401415 eV Total energy + Delta-G solvation = -3469.132518 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19386 -39.11875 -38.46099 -37.73117 -35.84102 -34.73017 -32.94125 -31.26927 -30.67200 -29.06780 -27.34426 -27.11711 -25.29011 -23.81323 -23.21116 -22.65557 -21.26703 -19.13619 -18.75866 -18.33105 -17.39592 -17.30542 -17.15671 -16.70217 -16.41708 -16.13291 -15.87710 -15.44326 -15.14172 -14.97449 -14.61783 -14.33646 -14.18253 -13.64795 -13.56019 -13.34796 -13.13029 -13.08634 -12.95898 -12.82169 -12.70614 -12.49315 -12.23506 -12.03895 -11.90382 -11.73656 -11.56127 -11.28497 -11.17297 -10.88960 -10.80460 -10.60153 -9.79131 -8.33797 -7.78962 -6.36341 0.27368 1.14783 1.28876 1.30628 1.42531 1.73753 2.30864 2.70307 2.81544 2.97412 3.01919 3.74942 3.94255 4.00608 4.07213 4.15211 4.26101 4.27552 4.35720 4.38612 4.43678 4.49174 4.50279 4.57440 4.66807 4.79622 4.82206 4.83965 4.91123 4.96397 5.10278 5.14911 5.28290 5.36451 5.46070 5.51389 5.54846 5.63594 5.91796 6.19009 6.25103 6.29018 6.52081 6.70997 6.78881 7.19504 7.28137 8.83151 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.004033 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.360811 B = 6940.442309 C = 7265.315391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.414 6.414 3 C 0.042 3.958 4 C 0.091 3.909 5 N -0.483 5.483 6 C 0.057 3.943 7 C -0.174 4.174 8 C -0.155 4.155 9 C 0.074 3.926 10 N -0.728 5.728 11 C 0.156 3.844 12 H 0.081 0.919 13 C -0.154 4.154 14 C -0.103 4.103 15 C -0.004 4.004 16 C -0.531 4.531 17 H 0.036 0.964 18 C 0.007 3.993 19 N -0.949 5.949 20 Si 0.947 3.053 21 H -0.279 1.279 22 H -0.276 1.276 23 H -0.250 1.250 24 C 0.494 3.506 25 O -0.588 6.588 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.204 0.796 34 H 0.173 0.827 35 H 0.135 0.865 36 H 0.392 0.608 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.017 0.983 43 H 0.005 0.995 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.493 27.400 -3.664 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C -0.035 4.035 4 C -0.030 4.030 5 N -0.196 5.196 6 C -0.067 4.067 7 C -0.197 4.197 8 C -0.185 4.185 9 C -0.033 4.033 10 N -0.357 5.357 11 C 0.051 3.949 12 H 0.099 0.901 13 C -0.213 4.213 14 C -0.141 4.141 15 C -0.041 4.041 16 C -0.569 4.569 17 H 0.054 0.946 18 C -0.190 4.190 19 N -0.590 5.590 20 Si 0.771 3.229 21 H -0.204 1.204 22 H -0.202 1.202 23 H -0.174 1.174 24 C 0.293 3.707 25 O -0.474 6.474 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.221 0.779 34 H 0.190 0.810 35 H 0.153 0.847 36 H 0.225 0.775 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.035 0.965 43 H 0.023 0.977 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.356 26.677 -3.115 31.447 hybrid contribution 0.337 -0.528 0.939 1.128 sum -16.019 26.149 -2.177 30.743 Atomic orbital electron populations 1.22818 0.80153 1.02784 1.00938 1.88130 1.20872 1.28803 1.95567 1.23117 0.92559 0.85081 1.02771 1.22259 0.94404 1.01081 0.85213 1.45074 1.54637 1.06124 1.13780 1.22290 1.00094 0.98384 0.85895 1.20690 1.06429 0.93635 0.98904 1.20968 1.05117 0.94513 0.97929 1.18783 1.03621 0.86143 0.94733 1.44679 1.73958 1.02323 1.14698 1.21027 0.95907 0.93600 0.84333 0.90092 1.22163 0.97549 1.02153 0.99419 1.21646 0.96337 0.95700 1.00417 1.19438 0.94570 0.94664 0.95445 1.21549 1.08210 0.93596 1.33517 0.94598 1.25939 0.97733 0.99355 0.95955 1.70059 1.21020 1.26300 1.41626 0.85707 0.77612 0.80443 0.79126 1.20443 1.20171 1.17407 1.16912 0.81963 0.82847 0.88939 1.90931 1.54789 1.62055 1.39645 0.90737 0.92408 0.93082 0.89380 0.91081 0.90757 0.82792 0.77912 0.80953 0.84747 0.77452 0.93331 0.91711 0.90180 0.93419 0.90559 0.96458 0.97703 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -10.54 9.42 -140.19 -1.32 -11.86 16 3 C 0.04 0.63 6.28 71.98 0.45 1.08 16 4 C 0.09 1.53 5.80 86.38 0.50 2.03 16 5 N -0.48 -10.99 2.58 -650.13 -1.68 -12.67 16 6 C 0.06 0.84 10.28 83.34 0.86 1.69 16 7 C -0.17 -2.91 10.00 22.06 0.22 -2.68 16 8 C -0.16 -3.87 8.92 22.42 0.20 -3.67 16 9 C 0.07 2.42 6.67 38.22 0.25 2.68 16 10 N -0.73 -26.35 4.70 -318.38 -1.50 -27.84 16 11 C 0.16 5.07 2.27 44.99 0.10 5.17 16 12 H 0.08 2.50 6.52 -2.39 -0.02 2.48 16 13 C -0.15 -4.01 9.45 71.98 0.68 -3.33 16 14 C -0.10 -4.15 4.69 30.60 0.14 -4.01 16 15 C 0.00 -0.19 3.93 29.85 0.12 -0.07 16 16 C -0.53 -32.24 9.66 25.60 0.25 -32.00 16 17 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 18 C 0.01 0.43 5.47 84.65 0.46 0.90 16 19 N -0.95 -61.99 13.96 21.45 0.30 -61.69 16 20 Si 0.95 47.89 27.47 68.60 1.88 49.77 16 21 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.25 -11.92 6.54 99.48 0.65 -11.27 16 24 C 0.49 16.83 7.04 84.99 0.60 17.43 16 25 O -0.59 -25.17 15.14 3.22 0.05 -25.13 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.75 7.40 -2.39 -0.02 1.74 16 32 H 0.15 0.92 8.01 -2.39 -0.02 0.90 16 33 H 0.20 0.72 8.04 -2.91 -0.02 0.70 16 34 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.13 3.09 6.17 -2.91 -0.02 3.07 16 36 H 0.39 16.11 8.06 -92.71 -0.75 15.37 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.06 1.52 7.75 -2.39 -0.02 1.51 16 39 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 43 H 0.00 0.24 7.18 -2.39 -0.02 0.22 16 44 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -85.11 359.46 4.00 -81.11 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.18 Total: 21.31 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 6.09 Total: -13.01 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -2.87 Total: -102.20 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.27 Total: -36.99 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.88 Total: 49.77 kcal Total: -85.11 4.00 -81.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491818.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.413 kcal (2) G-P(sol) polarization free energy of solvation -85.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds