Wall clock time and date at job start Tue Mar 31 2020 07:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46869 * 2 1 4 4 C 1.52995 * 109.47240 * 240.00076 * 2 1 3 5 5 C 1.53007 * 109.47093 * 174.99783 * 4 2 1 6 6 C 1.50699 * 109.46651 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00270 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00014 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99666 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00532 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46651 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47280 * 119.99795 * 10 8 6 13 13 H 1.48496 * 109.47148 * 240.00119 * 10 8 6 14 14 N 1.46905 * 109.47191 * 119.99949 * 2 1 3 15 15 C 1.46902 * 110.99800 * 274.99934 * 14 2 1 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 2 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 C 1.53006 * 109.47000 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.47373 * 180.02562 * 18 17 16 20 20 C 1.34517 * 125.20447 * 269.69639 * 19 18 17 21 21 O 1.21398 * 125.79408 * 359.97438 * 20 19 18 22 22 C 1.47967 * 108.40946 * 179.85231 * 20 19 18 23 23 C 1.34318 * 106.79467 * 0.40572 * 22 20 19 24 24 C 1.34522 * 125.20582 * 89.99778 * 19 18 17 25 25 O 1.21403 * 125.79123 * 359.97438 * 24 19 18 26 26 H 1.09002 * 109.46808 * 299.99830 * 1 2 3 27 27 H 1.09001 * 109.47129 * 59.99933 * 1 2 3 28 28 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47077 * 294.99883 * 4 2 1 30 30 H 1.09003 * 109.46883 * 55.00222 * 4 2 1 31 31 H 1.08993 * 109.47402 * 299.99690 * 5 4 2 32 32 H 1.08993 * 109.46938 * 60.00418 * 5 4 2 33 33 H 0.97007 * 120.00253 * 179.97438 * 9 8 6 34 34 H 1.00898 * 110.99743 * 151.04984 * 14 2 1 35 35 H 1.09000 * 109.47263 * 60.00269 * 15 14 2 36 36 H 1.09001 * 109.47582 * 299.99548 * 15 14 2 37 37 H 1.08993 * 109.46955 * 300.00347 * 16 15 14 38 38 H 1.09000 * 109.47050 * 60.00176 * 16 15 14 39 39 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 40 40 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 41 41 H 1.09004 * 109.47107 * 300.00294 * 18 17 16 42 42 H 1.09000 * 109.46866 * 60.00185 * 18 17 16 43 43 H 1.08003 * 126.60243 * 180.13746 * 22 20 19 44 44 H 1.08000 * 126.60465 * 179.79405 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.0671 -1.3230 -2.5445 7 1 3.3686 -1.8028 -3.2140 8 6 5.4184 -1.3600 -2.8159 9 7 6.2690 -0.7762 -2.0003 10 14 6.0411 -2.2405 -4.3411 11 1 4.8910 -2.8110 -5.0874 12 1 6.7644 -1.2764 -5.2087 13 1 6.9628 -3.3335 -3.9400 14 7 2.0197 -0.6925 1.1995 15 6 2.0825 0.2226 2.3469 16 6 2.5951 -0.5332 3.5745 17 6 2.6611 0.4201 4.7694 18 6 3.1743 -0.3355 5.9969 19 7 3.2370 0.5770 7.1412 20 6 4.3044 1.3212 7.4821 21 8 5.3678 1.3473 6.8970 22 6 3.9615 2.1047 8.6895 23 6 2.6999 1.7804 9.0173 24 6 2.2378 0.7947 8.0152 25 8 1.1426 0.2716 7.9862 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -1.7715 -1.2055 30 1 1.6054 -0.2616 -2.1369 31 1 3.8533 0.4370 -1.3574 32 1 3.9995 -1.0727 -0.4260 33 1 7.2198 -0.8024 -2.1910 34 1 2.9174 -1.1204 1.0287 35 1 1.0871 0.6163 2.5526 36 1 2.7589 1.0462 2.1183 37 1 1.9184 -1.3565 3.8029 38 1 3.5904 -0.9273 3.3691 39 1 3.3380 1.2431 4.5407 40 1 1.6660 0.8145 4.9749 41 1 2.4977 -1.1589 6.2258 42 1 4.1695 -0.7296 5.7911 43 1 4.6036 2.8000 9.2099 44 1 2.1320 2.1653 9.8514 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172494284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:15 Heat of formation + Delta-G solvation = -49.564263 kcal Electronic energy + Delta-G solvation = -22704.285075 eV Core-core repulsion = 19236.242457 eV Total energy + Delta-G solvation = -3468.042618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.56775 -38.98028 -37.53536 -36.55594 -35.66250 -33.61252 -32.68745 -30.73677 -29.19028 -27.19030 -25.72661 -25.10141 -23.32862 -22.00876 -21.38957 -21.18339 -20.23273 -19.41843 -17.81752 -16.87299 -16.61801 -16.41122 -15.74102 -15.53427 -15.10112 -14.71983 -14.54464 -14.49245 -14.35315 -14.34281 -13.53593 -13.22940 -12.95768 -12.55883 -12.40062 -12.05592 -11.88164 -11.55015 -11.36507 -11.31486 -11.12104 -11.02076 -10.90215 -10.71334 -10.69267 -10.59973 -10.45513 -10.25152 -9.97842 -9.74470 -9.26504 -9.01138 -8.35968 -7.96138 -6.00419 -4.02480 -0.38056 1.98449 2.12752 2.40287 3.31157 3.35510 3.38694 3.43108 3.72064 4.40479 4.46220 4.57449 4.76750 4.78983 4.81428 5.01295 5.11614 5.14789 5.17278 5.35317 5.45609 5.47865 5.55323 5.64702 5.74533 5.83966 5.91596 5.96197 6.17158 6.19504 6.29806 6.31278 6.38676 6.53036 6.57330 6.76753 6.92779 7.09602 7.22030 7.53311 7.62922 7.80658 7.92662 8.00156 8.42836 9.04534 9.61794 11.10814 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002522 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.939289 B =11100.497150 C =12261.358581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.082 3.918 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.688 5.688 15 C 0.061 3.939 16 C -0.114 4.114 17 C -0.133 4.133 18 C 0.113 3.887 19 N -0.588 5.588 20 C 0.536 3.464 21 O -0.450 6.450 22 C -0.140 4.140 23 C -0.144 4.144 24 C 0.539 3.461 25 O -0.455 6.455 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.352 0.648 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.183 0.817 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.756 6.100 23.815 25.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.054 0.946 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.323 5.323 15 C -0.069 4.069 16 C -0.152 4.152 17 C -0.172 4.172 18 C -0.006 4.006 19 N -0.331 5.331 20 C 0.325 3.675 21 O -0.320 6.320 22 C -0.162 4.162 23 C -0.165 4.165 24 C 0.328 3.672 25 O -0.326 6.326 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.173 0.827 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.200 0.800 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.202 5.535 23.573 25.566 hybrid contribution 1.288 0.190 -1.027 1.658 sum -6.914 5.725 22.546 24.267 Atomic orbital electron populations 1.21788 0.95820 1.01673 1.00100 1.21594 0.94464 0.96061 0.90628 0.94561 1.21833 0.99658 0.99451 0.94325 1.19130 0.88801 0.96836 0.96932 1.21279 0.91950 1.34166 1.08250 0.92610 1.25034 0.97106 0.95644 0.96735 1.69972 1.02309 1.44231 1.36999 0.86543 0.78851 0.79470 0.83192 1.19731 1.21069 1.21002 1.60605 1.34666 1.32556 1.04466 1.21901 0.99899 0.94196 0.90873 1.21459 1.02317 0.98282 0.93176 1.21894 1.01905 0.99400 0.93975 1.21842 1.04339 0.91378 0.83066 1.46806 1.15577 1.42280 1.28447 1.19465 0.83276 0.79601 0.85172 1.90848 1.23473 1.61776 1.55906 1.24680 0.97315 0.98859 0.95338 1.24656 0.96516 0.96073 0.99279 1.19445 0.83853 0.81993 0.81955 1.90820 1.19984 1.49297 1.72513 0.93877 0.93068 0.92386 0.92454 0.92764 0.97014 0.96647 0.93086 0.82659 0.91699 0.95464 0.90753 0.91330 0.91276 0.91323 0.88515 0.88419 0.80016 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.42 37.16 0.35 -1.70 16 2 C 0.08 1.46 2.65 -67.71 -0.18 1.28 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 4 C -0.11 -2.40 4.74 -26.73 -0.13 -2.53 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.38 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 7 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 N -0.69 -11.68 6.31 -106.72 -0.67 -12.35 16 15 C 0.06 0.88 5.48 -3.82 -0.02 0.85 16 16 C -0.11 -1.37 5.48 -26.73 -0.15 -1.51 16 17 C -0.13 -1.40 5.54 -26.73 -0.15 -1.55 16 18 C 0.11 1.08 5.82 -4.04 -0.02 1.06 16 19 N -0.59 -5.42 2.64 -117.52 -0.31 -5.73 16 20 C 0.54 4.87 8.04 -12.39 -0.10 4.77 16 21 O -0.45 -5.69 17.74 5.46 0.10 -5.59 16 22 C -0.14 -0.65 11.15 -36.98 -0.41 -1.06 16 23 C -0.14 -0.63 11.15 -36.98 -0.41 -1.04 16 24 C 0.54 4.65 8.04 -12.39 -0.10 4.55 16 25 O -0.46 -5.31 17.74 5.45 0.10 -5.22 16 26 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.41 6.43 -51.93 -0.33 0.08 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.35 6.60 6.47 -39.29 -0.25 6.35 16 35 H 0.06 0.88 7.44 -51.93 -0.39 0.50 16 36 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.86 8.01 -51.93 -0.42 0.45 16 42 H 0.10 0.93 8.01 -51.93 -0.42 0.52 16 43 H 0.18 0.27 8.06 -52.48 -0.42 -0.15 16 44 H 0.18 0.21 8.06 -52.49 -0.42 -0.21 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -33.51 370.57 -8.56 -42.07 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.21 Total: 0.75 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.86 Total: -10.07 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.25 Total: -44.36 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.19 Total: -10.81 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.51 -8.56 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172494284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.495 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds